Wall clock time and date at job start Mon Mar 30 2020 07:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48502 * 109.47351 * 240.00126 * 3 2 1 5 5 H 1.48494 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46942 * 120.00556 * 3 2 1 7 7 C 1.39929 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99451 * 195.81978 * 7 2 1 9 9 C 1.41298 * 120.00566 * 16.10548 * 7 2 1 10 10 C 1.40770 * 120.22622 * 26.16596 * 9 7 2 11 11 C 1.36536 * 119.93760 * 179.97438 * 10 9 7 12 12 C 1.38791 * 120.42070 * 0.02562 * 11 10 9 13 13 Cl 1.73599 * 119.77234 * 180.02562 * 12 11 10 14 14 C 1.38946 * 120.45867 * 0.02562 * 12 11 10 15 15 F 1.35096 * 119.97323 * 180.02562 * 14 12 11 16 16 C 1.37956 * 120.04412 * 359.73558 * 14 12 11 17 17 Br 1.89110 * 120.20280 * 180.25503 * 16 14 12 18 18 H 0.96999 * 119.99891 * 4.97845 * 1 2 3 19 19 H 1.07999 * 120.02666 * 0.02562 * 10 9 7 20 20 H 1.08004 * 119.78684 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0573 -1.2297 0.2544 9 6 1.3431 -2.4114 -0.3405 10 6 0.2117 -2.3818 -1.1775 11 6 -0.4259 -3.5445 -1.5027 12 6 0.0338 -4.7589 -1.0126 13 17 -0.7894 -6.2271 -1.4373 14 6 1.1483 -4.8077 -0.1843 15 9 1.5877 -5.9952 0.2868 16 6 1.8101 -3.6450 0.1524 17 35 3.3317 -3.7070 1.2735 18 1 -0.4850 0.8369 -0.0729 19 1 -0.1511 -1.4403 -1.5627 20 1 -1.2936 -3.5190 -2.1454 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258368849.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:32 Heat of formation + Delta-G solvation = -55.107213 kcal Electronic energy + Delta-G solvation = -11903.040390 eV Core-core repulsion = 9278.202799 eV Total energy + Delta-G solvation = -2624.837591 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.78134 -39.50542 -37.24156 -35.58164 -32.91831 -31.28215 -29.88978 -27.30053 -23.21778 -22.94949 -19.71654 -17.87467 -17.30141 -16.82716 -16.67503 -16.55833 -14.99782 -14.46547 -14.27428 -13.88418 -13.48135 -13.14778 -12.90047 -12.80896 -12.49048 -12.09159 -11.83725 -11.54628 -11.34392 -11.05629 -10.75064 -9.45029 -9.38286 -8.85857 -6.60862 0.51537 0.52606 1.01769 1.41871 1.49088 1.54172 1.59018 2.16893 2.44697 3.31455 3.44334 4.30373 4.54002 4.74172 5.06057 5.07690 5.32779 5.54695 5.71736 5.93338 6.32760 6.57357 6.62662 8.09454 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.009740 C = 0.006755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.592718 B = 2873.977990 C = 4144.114665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.044 3.956 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.096 0.904 9 C 0.124 3.876 10 C -0.164 4.164 11 C -0.058 4.058 12 C -0.196 4.196 13 Cl -0.083 7.083 14 C 0.155 3.845 15 F -0.141 7.141 16 C -0.255 4.255 17 Br -0.060 7.060 18 H 0.301 0.699 19 H 0.133 0.867 20 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -0.374 -0.599 2.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.114 0.886 9 C 0.119 3.881 10 C -0.184 4.184 11 C -0.077 4.077 12 C -0.225 4.225 13 Cl -0.054 7.054 14 C 0.133 3.867 15 F -0.119 7.119 16 C -0.336 4.336 17 Br 0.024 6.976 18 H 0.113 0.887 19 H 0.151 0.849 20 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.297 -0.417 -0.115 2.338 hybrid contribution -0.156 0.109 -0.108 0.219 sum 2.141 -0.307 -0.223 2.174 Atomic orbital electron populations 1.69787 1.08944 1.32414 1.30327 1.26810 0.95525 1.04578 0.90732 0.85217 0.79010 0.75165 0.80478 1.17942 1.18672 1.18406 1.20119 0.98422 0.91195 1.37559 0.88625 1.17610 0.91252 0.90828 0.88447 1.21119 0.98698 0.97551 1.01018 1.20485 0.99189 0.89698 0.98341 1.20194 1.00873 0.88489 1.12964 1.98243 1.78411 1.35940 1.92855 1.17001 0.93903 0.79737 0.96097 1.91413 1.88966 1.44686 1.86882 1.21621 1.03287 0.94948 1.13747 1.96288 1.37022 1.98926 1.65314 0.88721 0.84949 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.23 10.96 21.82 0.24 -34.99 14 2 C 0.04 1.89 5.16 85.25 0.44 2.33 14 3 Si 0.98 32.97 29.59 68.60 2.03 35.00 14 4 H -0.26 -8.41 7.11 99.48 0.71 -7.70 14 5 H -0.26 -8.27 7.11 99.48 0.71 -7.56 14 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 7 C -0.45 -21.02 8.44 23.43 0.20 -20.82 14 8 H 0.10 4.41 6.91 -2.91 -0.02 4.39 14 9 C 0.12 6.00 5.56 -21.28 -0.12 5.88 14 10 C -0.16 -7.50 8.63 22.49 0.19 -7.31 14 11 C -0.06 -2.42 9.75 22.00 0.21 -2.21 14 12 C -0.20 -8.43 6.35 22.57 0.14 -8.29 14 13 Cl -0.08 -3.07 28.60 -2.72 -0.08 -3.14 14 14 C 0.15 7.09 7.24 22.37 0.16 7.26 14 15 F -0.14 -6.25 16.29 44.97 0.73 -5.51 14 16 C -0.25 -12.05 6.29 22.83 0.14 -11.90 14 17 Br -0.06 -2.50 31.70 -20.37 -0.65 -3.15 14 18 H 0.30 11.92 8.30 -92.71 -0.77 11.15 14 19 H 0.13 6.05 6.21 -2.91 -0.02 6.03 14 20 H 0.14 4.96 8.06 -2.91 -0.02 4.94 14 Total: -1.00 -48.58 225.35 4.94 -43.63 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.29 Total: 3.21 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 1.38 Total: -35.06 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.24 Total: -34.99 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.73 Total: -5.51 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.08 Total: -3.14 kcal Atomic # 35 Polarization: -2.50 SS G_CDS: -0.65 Total: -3.15 kcal Total: -48.58 4.94 -43.63 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258368849.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.474 kcal (2) G-P(sol) polarization free energy of solvation -48.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds