Wall clock time and date at job start Mon Mar 30 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47132 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47256 * 120.00152 * 3 2 1 6 6 H 1.48500 * 109.46931 * 240.00122 * 3 2 1 7 7 C 1.39916 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99574 * 154.65614 * 7 2 1 9 9 C 1.41312 * 120.00084 * 334.65168 * 7 2 1 10 10 C 1.40769 * 120.20535 * 154.73535 * 9 7 2 11 11 C 1.37598 * 119.78375 * 179.97438 * 10 9 7 12 12 Cl 1.73608 * 119.89638 * 179.97438 * 11 10 9 13 13 C 1.39049 * 120.20738 * 0.02562 * 11 10 9 14 14 F 1.35102 * 119.79641 * 179.97438 * 13 11 10 15 15 C 1.38980 * 120.41964 * 359.95310 * 13 11 10 16 16 Br 1.89097 * 119.89704 * 180.02562 * 15 13 11 17 17 C 1.37632 * 120.20661 * 359.78724 * 15 13 11 18 18 H 0.97001 * 120.00699 * 174.20356 * 1 2 3 19 19 H 1.08009 * 120.10870 * 359.95774 * 10 9 7 20 20 H 1.08002 * 120.10287 * 180.23292 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7464 -0.0006 5 1 3.0963 1.6964 1.2124 6 1 3.0963 1.6963 -1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0101 -1.2569 -0.3998 9 6 1.4035 -2.3764 0.5250 10 6 1.8149 -3.6481 0.0834 11 6 1.2206 -4.7764 0.6003 12 17 1.7253 -6.3462 0.0573 13 6 0.2165 -4.6631 1.5554 14 9 -0.3617 -5.7764 2.0570 15 6 -0.1960 -3.4119 1.9978 16 35 -1.5624 -3.2750 3.2978 17 6 0.3903 -2.2721 1.4963 18 1 -0.4851 -0.8357 -0.0848 19 1 2.5942 -3.7379 -0.6590 20 1 0.0711 -1.3008 1.8441 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258474981.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:58 Heat of formation + Delta-G solvation = -60.029881 kcal Electronic energy + Delta-G solvation = -11860.819110 eV Core-core repulsion = 9235.768056 eV Total energy + Delta-G solvation = -2625.051054 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.56042 -39.80611 -37.57529 -35.82088 -33.22832 -31.11853 -30.18182 -27.12968 -23.54533 -23.06618 -20.05788 -18.37829 -17.51546 -16.89976 -16.51926 -15.71737 -15.05299 -14.86479 -14.50572 -14.03471 -13.84061 -13.41745 -12.92380 -12.76856 -12.22061 -12.06319 -11.92812 -11.68444 -11.53812 -11.25492 -10.92186 -9.75067 -9.62249 -9.33009 -6.66666 0.22364 0.31868 0.48579 1.16239 1.55133 1.59354 1.84236 2.29173 2.35731 3.12460 3.44089 4.15352 4.42389 4.48953 4.74560 5.11079 5.30657 5.38793 5.49126 5.79005 5.86331 6.35939 6.62067 7.86661 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.009379 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.854114 B = 2984.761326 C = 4472.935825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.007 3.993 3 Si 1.116 2.884 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.253 1.253 7 C -0.509 4.509 8 H 0.096 0.904 9 C 0.075 3.925 10 C -0.193 4.193 11 C -0.009 4.009 12 Cl -0.064 7.064 13 C -0.045 4.045 14 F -0.145 7.145 15 C -0.065 4.065 16 Br -0.044 7.044 17 C -0.183 4.183 18 H 0.289 0.711 19 H 0.134 0.866 20 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -1.653 2.479 3.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.213 4.213 3 Si 0.932 3.068 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.177 1.177 7 C -0.535 4.535 8 H 0.114 0.886 9 C 0.070 3.930 10 C -0.214 4.214 11 C -0.037 4.037 12 Cl -0.035 7.035 13 C -0.068 4.068 14 F -0.124 7.124 15 C -0.145 4.145 16 Br 0.041 6.959 17 C -0.204 4.204 18 H 0.102 0.898 19 H 0.152 0.848 20 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.228 -0.172 2.986 3.000 hybrid contribution 0.138 -2.322 -0.282 2.343 sum -0.089 -2.494 2.704 3.680 Atomic orbital electron populations 1.70603 1.09048 1.33833 1.27870 1.28567 0.95492 1.07623 0.89606 0.82999 0.74836 0.69443 0.79529 1.19805 1.18508 1.17697 1.20947 1.03620 0.93928 1.35029 0.88578 1.17821 0.91268 0.93244 0.90666 1.21015 1.05904 0.89804 1.04643 1.20623 0.97803 0.87199 0.98073 1.98298 1.90222 1.26025 1.88998 1.16539 1.03039 0.81542 1.05647 1.91374 1.83847 1.50357 1.86818 1.21519 0.98953 0.94234 0.99813 1.96512 1.47968 1.98739 1.52688 1.21071 1.02693 0.95942 1.00695 0.89831 0.84829 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.02 12.31 21.82 0.27 -37.75 14 2 C 0.01 0.29 4.94 85.25 0.42 0.71 14 3 Si 1.12 37.16 30.00 68.60 2.06 39.21 14 4 H -0.27 -9.20 7.11 99.48 0.71 -8.49 14 5 H -0.26 -8.23 7.11 99.48 0.71 -7.53 14 6 H -0.25 -7.63 7.11 99.48 0.71 -6.92 14 7 C -0.51 -23.46 8.98 23.43 0.21 -23.25 14 8 H 0.10 4.17 7.96 -2.91 -0.02 4.15 14 9 C 0.07 3.53 5.30 -21.29 -0.11 3.41 14 10 C -0.19 -8.47 9.56 22.74 0.22 -8.25 14 11 C -0.01 -0.37 6.32 22.31 0.14 -0.23 14 12 Cl -0.06 -2.33 28.60 -2.72 -0.08 -2.41 14 13 C -0.04 -2.00 7.27 22.64 0.16 -1.83 14 14 F -0.14 -6.24 16.27 44.97 0.73 -5.51 14 15 C -0.06 -2.88 6.22 22.30 0.14 -2.74 14 16 Br -0.04 -1.68 33.26 -20.37 -0.68 -2.35 14 17 C -0.18 -8.57 7.67 22.74 0.17 -8.40 14 18 H 0.29 14.48 6.68 -92.71 -0.62 13.87 14 19 H 0.13 5.38 8.06 -2.91 -0.02 5.35 14 20 H 0.12 5.81 6.49 -2.91 -0.02 5.79 14 Total: -1.00 -48.27 227.20 5.09 -43.17 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.44 Total: 6.21 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 1.35 Total: -40.58 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.27 Total: -37.75 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.73 Total: -5.51 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.06 Total: 39.21 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Atomic # 35 Polarization: -1.68 SS G_CDS: -0.68 Total: -2.35 kcal Total: -48.27 5.09 -43.17 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258474981.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.856 kcal (2) G-P(sol) polarization free energy of solvation -48.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds