Wall clock time and date at job start Mon Mar 30 2020 07:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48507 * 109.46864 * 89.99908 * 3 2 1 5 5 H 1.48496 * 109.47230 * 210.00044 * 3 2 1 6 6 H 1.48502 * 109.47116 * 330.00321 * 3 2 1 7 7 C 1.39922 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00660 * 17.83959 * 7 2 1 9 9 C 1.41356 * 119.99798 * 197.84342 * 7 2 1 10 10 C 1.40730 * 120.21343 * 28.58564 * 9 7 2 11 11 C 1.37761 * 119.75733 * 180.02562 * 10 9 7 12 12 F 1.35104 * 119.90149 * 179.97438 * 11 10 9 13 13 C 1.39024 * 120.19169 * 0.02562 * 11 10 9 14 14 Cl 1.73601 * 119.77683 * 180.02562 * 13 11 10 15 15 C 1.38815 * 120.43726 * 359.97438 * 13 11 10 16 16 Br 1.89098 * 119.88053 * 180.02562 * 15 13 11 17 17 C 1.37686 * 120.23659 * 359.75651 * 15 13 11 18 18 H 0.97005 * 120.00397 * 175.44657 * 1 2 3 19 19 H 1.08005 * 120.12364 * 359.97438 * 10 9 7 20 20 H 1.08000 * 120.10121 * 180.27483 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 1.4002 5 1 3.5399 1.4402 -0.7000 6 1 1.4398 2.6527 -0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 1.5070 -2.1245 -0.2875 9 6 3.3705 -1.2414 0.3746 10 6 3.8765 -0.2906 1.2804 11 6 5.2061 -0.3278 1.6391 12 9 5.6950 0.5838 2.5081 13 6 6.0464 -1.3001 1.1086 14 17 7.7199 -1.3374 1.5685 15 6 5.5558 -2.2418 0.2145 16 35 6.7126 -3.5577 -0.4969 17 6 4.2287 -2.2245 -0.1521 18 1 -0.4851 -0.8374 -0.0667 19 1 3.2250 0.4660 1.6923 20 1 3.8484 -2.9609 -0.8445 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258487833.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:37 Heat of formation + Delta-G solvation = -59.517368 kcal Electronic energy + Delta-G solvation = -11924.409379 eV Core-core repulsion = 9299.380549 eV Total energy + Delta-G solvation = -2625.028830 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.91276 -39.78863 -37.39032 -35.82084 -33.24989 -31.81593 -30.18486 -27.09054 -23.71170 -22.74724 -20.40365 -18.35361 -17.60019 -17.33308 -16.71915 -15.88846 -15.53698 -14.98081 -14.46721 -14.35928 -14.11067 -13.05868 -12.91301 -12.73404 -12.33291 -12.07422 -11.91989 -11.63358 -11.55291 -11.11065 -10.93417 -9.78945 -9.63976 -9.42611 -6.83669 0.14115 0.24306 0.51217 1.31629 1.33544 1.46949 1.70668 2.06093 2.23088 3.04725 3.33120 4.03305 4.21909 4.41256 4.77549 4.93432 5.09676 5.29537 5.41761 5.55579 6.07589 6.15896 6.47723 7.80431 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.008513 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.715161 B = 3288.324246 C = 4153.461290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.021 3.979 3 Si 1.086 2.914 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.075 0.925 9 C 0.106 3.894 10 C -0.279 4.279 11 C 0.155 3.845 12 F -0.138 7.138 13 C -0.185 4.185 14 Cl -0.062 7.062 15 C -0.016 4.016 16 Br -0.031 7.031 17 C -0.182 4.182 18 H 0.290 0.710 19 H 0.131 0.869 20 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -3.145 -0.840 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.199 4.199 3 Si 0.907 3.093 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.299 4.299 11 C 0.134 3.866 12 F -0.117 7.117 13 C -0.215 4.215 14 Cl -0.033 7.033 15 C -0.097 4.097 16 Br 0.055 6.945 17 C -0.203 4.203 18 H 0.101 0.899 19 H 0.149 0.851 20 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.639 -2.037 -0.996 9.902 hybrid contribution -0.308 -1.483 0.362 1.557 sum 9.331 -3.520 -0.635 9.993 Atomic orbital electron populations 1.70577 1.08466 1.33606 1.30472 1.28178 0.95723 1.06436 0.89521 0.83421 0.75293 0.71328 0.79263 1.18518 1.18346 1.19675 1.20779 0.95008 0.97207 1.40267 0.90642 1.17588 0.93188 0.90267 0.88845 1.21236 0.93812 1.07803 1.07090 1.17056 0.91493 0.87677 0.90375 1.91438 1.88384 1.64769 1.67081 1.20052 0.86624 1.04219 1.10621 1.98274 1.14730 1.98376 1.91930 1.21290 0.94533 0.95257 0.98596 1.96563 1.63277 1.50544 1.84155 1.21199 0.90443 1.03959 1.04719 0.89881 0.85150 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.56 13.66 21.82 0.30 -39.26 14 2 C 0.02 0.98 5.41 85.25 0.46 1.44 14 3 Si 1.09 43.98 24.90 68.60 1.71 45.69 14 4 H -0.26 -9.97 6.43 99.48 0.64 -9.33 14 5 H -0.26 -10.45 7.03 99.48 0.70 -9.75 14 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 14 7 C -0.51 -24.29 9.43 23.45 0.22 -24.07 14 8 H 0.08 3.73 8.06 -2.91 -0.02 3.70 14 9 C 0.11 4.82 5.14 -21.30 -0.11 4.71 14 10 C -0.28 -12.39 7.25 22.77 0.17 -12.22 14 11 C 0.15 6.55 7.26 22.35 0.16 6.71 14 12 F -0.14 -5.56 16.82 44.97 0.76 -4.81 14 13 C -0.18 -7.42 6.35 22.60 0.14 -7.28 14 14 Cl -0.06 -2.16 27.36 -2.72 -0.07 -2.23 14 15 C -0.02 -0.64 6.22 22.28 0.14 -0.50 14 16 Br -0.03 -0.99 32.49 -20.37 -0.66 -1.65 14 17 C -0.18 -7.55 9.52 22.75 0.22 -7.34 14 18 H 0.29 13.77 8.73 -92.70 -0.81 12.96 14 19 H 0.13 5.70 4.38 -2.91 -0.01 5.69 14 20 H 0.13 5.19 8.06 -2.91 -0.02 5.16 14 Total: -1.00 -46.71 221.60 4.60 -42.10 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: 1.18 Total: -1.29 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 1.40 Total: -38.55 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.30 Total: -39.26 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.76 Total: -4.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.71 Total: 45.69 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -0.66 Total: -1.65 kcal Total: -46.71 4.60 -42.10 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258487833.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.414 kcal (2) G-P(sol) polarization free energy of solvation -46.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds