Wall clock time and date at job start Mon Mar 30 2020 07:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35954 * 116.99821 * 2 1 4 4 C 1.38798 * 119.96276 * 0.02562 * 3 2 1 5 5 C 1.38009 * 120.06854 * 179.97438 * 4 3 2 6 6 C 1.39103 * 119.99274 * 359.97438 * 5 4 3 7 7 S 1.76197 * 120.03174 * 179.97438 * 6 5 4 8 8 C 1.76196 * 100.00266 * 6.98153 * 7 6 5 9 9 H 1.08001 * 120.00236 * 5.67843 * 8 7 6 10 10 C 1.38673 * 119.99946 * 185.68716 * 8 7 6 11 11 N 1.31665 * 120.00274 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99914 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47712 * 89.99222 * 12 10 8 14 14 H 1.48499 * 109.46870 * 209.99569 * 12 10 8 15 15 H 1.48501 * 109.47244 * 329.99133 * 12 10 8 16 16 C 1.39193 * 119.93016 * 0.02562 * 6 5 4 17 17 Cl 1.73599 * 120.03618 * 179.97438 * 16 6 5 18 18 C 1.38187 * 119.92833 * 359.74257 * 16 6 5 19 19 Cl 1.73597 * 119.99934 * 180.25228 * 18 16 6 20 20 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47011 * 59.99895 * 1 2 3 22 22 H 1.08995 * 109.46869 * 299.99992 * 1 2 3 23 23 H 1.07993 * 119.96988 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.99926 * 180.02562 * 5 4 3 25 25 H 0.97002 * 120.00073 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2895 2.3749 0.0005 5 6 1.9138 3.6058 0.0011 6 6 3.3028 3.6810 0.0016 7 16 4.1008 5.2519 0.0016 8 6 2.7038 6.3049 0.2118 9 1 1.7274 5.8780 0.3876 10 6 2.8579 7.6817 0.1512 11 7 4.0483 8.2021 -0.0629 12 14 1.3770 8.7980 0.3747 13 1 1.2186 9.1282 1.8138 14 1 1.5781 10.0483 -0.4009 15 1 0.1568 8.1050 -0.1113 16 6 4.0615 2.5140 0.0011 17 17 5.7951 2.6047 0.0011 18 6 3.4332 1.2832 0.0054 19 17 4.3777 -0.1733 0.0113 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 0.2111 2.3171 0.0005 24 1 1.3238 4.5104 0.0019 25 1 4.1561 9.1652 -0.1049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258980535.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:01 Heat of formation + Delta-G solvation = -30.638642 kcal Electronic energy + Delta-G solvation = -14603.883826 eV Core-core repulsion = 11760.748133 eV Total energy + Delta-G solvation = -2843.135692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72566 -37.26667 -36.03654 -35.73538 -32.86322 -30.46707 -29.65835 -27.26919 -25.87595 -22.39503 -22.06558 -18.56125 -17.72993 -16.38875 -16.07965 -15.62394 -15.28773 -14.62277 -14.12125 -13.80179 -13.45426 -13.29288 -12.48459 -12.12585 -11.64028 -11.37669 -11.31847 -11.24873 -11.17789 -10.79640 -10.65991 -10.57971 -10.23507 -10.06989 -9.47896 -8.77158 -8.47314 -8.28209 -6.61953 -6.59212 -4.31917 1.44020 1.61264 2.27132 2.68806 2.97846 3.05138 3.12314 3.21513 3.59673 3.88224 3.91720 4.82157 4.94602 5.06935 5.20563 5.21596 5.42548 5.49781 5.70836 5.88453 6.05349 6.50843 6.71728 6.76812 7.34320 7.52431 8.01602 8.87023 10.45963 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.006288 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.949385 B = 4451.922466 C = 5665.481208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.310 6.310 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.096 4.096 6 C -0.105 4.105 7 S 0.098 5.902 8 C -0.564 4.564 9 H 0.094 0.906 10 C 0.081 3.919 11 N -0.859 5.859 12 Si 0.925 3.075 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.268 1.268 16 C -0.018 4.018 17 Cl -0.047 7.047 18 C -0.036 4.036 19 Cl -0.059 7.059 20 H 0.096 0.904 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.131 0.869 24 H 0.152 0.848 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 -11.334 0.025 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.224 6.224 3 C 0.041 3.959 4 C -0.189 4.189 5 C -0.122 4.122 6 C -0.222 4.222 7 S 0.357 5.643 8 C -0.711 4.711 9 H 0.111 0.889 10 C -0.130 4.130 11 N -0.492 5.492 12 Si 0.750 3.250 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.192 1.192 16 C -0.057 4.057 17 Cl -0.018 7.018 18 C -0.065 4.065 19 Cl -0.030 7.030 20 H 0.114 0.886 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.170 0.830 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.219 -10.835 -0.108 11.304 hybrid contribution -2.235 0.385 0.221 2.278 sum -5.454 -10.450 0.112 11.789 Atomic orbital electron populations 1.22991 0.78882 1.03425 1.01249 1.86076 1.20750 1.26054 1.89536 1.18158 0.89578 0.84907 1.03288 1.21122 0.99590 0.91555 1.06620 1.21355 0.93272 0.98066 0.99487 1.22585 0.96613 1.00176 1.02854 1.83808 1.11284 0.88163 1.81082 1.23423 0.96364 0.93397 1.57931 0.88881 1.25094 0.97372 0.97369 0.93181 1.69997 1.22106 1.13428 1.43673 0.86051 0.80967 0.79228 0.78765 1.19798 1.20396 1.19207 1.19781 0.85048 0.91169 1.09690 1.98338 1.08459 1.98313 1.96692 1.19592 0.88714 0.86685 1.11556 1.98325 1.72014 1.35566 1.97100 0.88591 0.92840 0.92839 0.85079 0.83041 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 15 2 O -0.31 -4.62 9.95 -19.60 -0.19 -4.82 15 3 C 0.09 1.56 6.68 -39.13 -0.26 1.30 15 4 C -0.17 -2.75 9.03 -39.46 -0.36 -3.11 15 5 C -0.10 -1.86 9.22 -39.34 -0.36 -2.22 15 6 C -0.10 -2.24 6.10 -38.91 -0.24 -2.48 15 7 S 0.10 2.41 20.55 -107.50 -2.21 0.20 15 8 C -0.56 -14.44 8.98 30.89 0.28 -14.16 15 9 H 0.09 2.23 4.97 -52.49 -0.26 1.97 15 10 C 0.08 2.08 5.49 -17.46 -0.10 1.99 15 11 N -0.86 -23.33 13.22 55.48 0.73 -22.60 15 12 Si 0.92 19.52 29.55 -169.99 -5.02 14.50 15 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 16 C -0.02 -0.37 6.34 -39.25 -0.25 -0.62 15 17 Cl -0.05 -0.89 26.83 -51.86 -1.39 -2.28 15 18 C -0.04 -0.66 6.33 -39.36 -0.25 -0.91 15 19 Cl -0.06 -0.97 27.49 -51.86 -1.43 -2.40 15 20 H 0.10 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 22 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 23 H 0.13 1.71 6.28 -52.49 -0.33 1.38 15 24 H 0.15 2.98 5.02 -52.49 -0.26 2.71 15 25 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 264.96 15.07 3.99 3.99 Total: -1.00 -27.62 264.96 -7.27 -34.89 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -1.21 Total: -2.57 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.54 Total: -18.92 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.73 Total: -22.60 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.21 Total: 0.20 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -2.82 Total: -4.68 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.62 -7.27 -34.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258980535.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.251 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds