Wall clock time and date at job start Mon Mar 30 2020 07:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35954 * 116.99821 * 2 1 4 4 C 1.38798 * 119.96276 * 0.02562 * 3 2 1 5 5 C 1.38009 * 120.06854 * 179.97438 * 4 3 2 6 6 C 1.39103 * 119.99274 * 359.97438 * 5 4 3 7 7 S 1.76197 * 120.03174 * 179.97438 * 6 5 4 8 8 C 1.76196 * 100.00266 * 6.98153 * 7 6 5 9 9 H 1.08001 * 120.00236 * 5.67843 * 8 7 6 10 10 C 1.38673 * 119.99946 * 185.68716 * 8 7 6 11 11 N 1.31665 * 120.00274 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99914 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47712 * 89.99222 * 12 10 8 14 14 H 1.48499 * 109.46870 * 209.99569 * 12 10 8 15 15 H 1.48501 * 109.47244 * 329.99133 * 12 10 8 16 16 C 1.39193 * 119.93016 * 0.02562 * 6 5 4 17 17 Cl 1.73599 * 120.03618 * 179.97438 * 16 6 5 18 18 C 1.38187 * 119.92833 * 359.74257 * 16 6 5 19 19 Cl 1.73597 * 119.99934 * 180.25228 * 18 16 6 20 20 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47011 * 59.99895 * 1 2 3 22 22 H 1.08995 * 109.46869 * 299.99992 * 1 2 3 23 23 H 1.07993 * 119.96988 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.99926 * 180.02562 * 5 4 3 25 25 H 0.97002 * 120.00073 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2895 2.3749 0.0005 5 6 1.9138 3.6058 0.0011 6 6 3.3028 3.6810 0.0016 7 16 4.1008 5.2519 0.0016 8 6 2.7038 6.3049 0.2118 9 1 1.7274 5.8780 0.3876 10 6 2.8579 7.6817 0.1512 11 7 4.0483 8.2021 -0.0629 12 14 1.3770 8.7980 0.3747 13 1 1.2186 9.1282 1.8138 14 1 1.5781 10.0483 -0.4009 15 1 0.1568 8.1050 -0.1113 16 6 4.0615 2.5140 0.0011 17 17 5.7951 2.6047 0.0011 18 6 3.4332 1.2832 0.0054 19 17 4.3777 -0.1733 0.0113 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 0.2111 2.3171 0.0005 24 1 1.3238 4.5104 0.0019 25 1 4.1561 9.1652 -0.1049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258980535.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:01 Heat of formation + Delta-G solvation = -45.910049 kcal Electronic energy + Delta-G solvation = -14604.546043 eV Core-core repulsion = 11760.748133 eV Total energy + Delta-G solvation = -2843.797910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05830 -38.62749 -37.42873 -37.21909 -34.75135 -31.91143 -31.07826 -28.39230 -27.63133 -23.87127 -23.46289 -20.23539 -19.15764 -17.90772 -17.46178 -17.06304 -16.72887 -16.10520 -15.60151 -15.23783 -14.82872 -14.75135 -14.10149 -13.36200 -13.06270 -12.94539 -12.88412 -12.62181 -12.57430 -12.24314 -12.10807 -11.99602 -11.72898 -11.66335 -11.24752 -10.57153 -9.99998 -9.74590 -8.48085 -8.37596 -6.25033 -0.03771 0.14327 0.79202 1.22351 1.30908 1.41733 1.49261 1.58362 2.17435 2.41228 2.42018 2.93126 3.15498 3.84095 3.90908 4.22900 4.38804 4.44297 4.47547 4.61838 4.80303 5.01544 5.23570 5.30480 5.50451 6.12461 6.30812 6.96069 8.60317 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.006288 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.949385 B = 4451.922466 C = 5665.481208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.317 6.317 3 C 0.114 3.886 4 C -0.157 4.157 5 C -0.098 4.098 6 C -0.121 4.121 7 S 0.021 5.979 8 C -0.572 4.572 9 H 0.103 0.897 10 C 0.027 3.973 11 N -0.903 5.903 12 Si 0.994 3.006 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.254 1.254 16 C -0.021 4.021 17 Cl -0.046 7.046 18 C -0.054 4.054 19 Cl -0.043 7.043 20 H 0.124 0.876 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.173 0.827 24 H 0.148 0.852 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -13.105 0.160 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.231 6.231 3 C 0.063 3.937 4 C -0.178 4.178 5 C -0.123 4.123 6 C -0.237 4.237 7 S 0.275 5.725 8 C -0.719 4.719 9 H 0.121 0.879 10 C -0.179 4.179 11 N -0.537 5.537 12 Si 0.816 3.184 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.178 1.178 16 C -0.058 4.058 17 Cl -0.017 7.017 18 C -0.084 4.084 19 Cl -0.014 7.014 20 H 0.143 0.857 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.191 0.809 24 H 0.165 0.835 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.969 -12.701 0.026 14.034 hybrid contribution -1.476 0.564 0.178 1.590 sum -7.445 -12.138 0.205 14.240 Atomic orbital electron populations 1.23442 0.75930 1.05946 1.02561 1.86106 1.23693 1.24631 1.88687 1.18308 0.89257 0.86057 1.00064 1.21442 1.01584 0.89914 1.04825 1.21437 0.92458 0.99267 0.99186 1.22427 0.97541 0.98569 1.05178 1.83858 1.13173 0.91101 1.84388 1.23729 0.96625 0.93819 1.57706 0.87900 1.26075 1.00168 0.98840 0.92837 1.70130 1.24341 1.13651 1.45624 0.85000 0.77650 0.77062 0.78714 1.19353 1.20249 1.17755 1.19929 0.85319 0.91487 1.09092 1.98334 1.08309 1.98342 1.96678 1.19749 0.89803 0.86806 1.12044 1.98327 1.71793 1.34250 1.97025 0.85742 0.91445 0.91453 0.80939 0.83468 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 15 2 O -0.32 -8.16 9.95 -93.03 -0.93 -9.09 15 3 C 0.11 3.53 6.68 22.56 0.15 3.68 15 4 C -0.16 -4.63 9.03 22.35 0.20 -4.43 15 5 C -0.10 -3.68 9.22 22.42 0.21 -3.47 15 6 C -0.12 -5.19 6.10 22.71 0.14 -5.05 15 7 S 0.02 1.06 20.55 -56.49 -1.16 -0.10 15 8 C -0.57 -29.82 8.98 67.92 0.61 -29.21 15 9 H 0.10 4.94 4.97 -2.91 -0.01 4.93 15 10 C 0.03 1.41 5.49 84.82 0.47 1.88 15 11 N -0.90 -50.64 13.22 21.63 0.29 -50.36 15 12 Si 0.99 40.04 29.55 68.60 2.03 42.07 15 13 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 14 H -0.28 -10.97 7.11 99.48 0.71 -10.26 15 15 H -0.25 -9.52 7.11 99.48 0.71 -8.81 15 16 C -0.02 -0.83 6.34 22.49 0.14 -0.69 15 17 Cl -0.05 -1.74 26.83 -2.72 -0.07 -1.82 15 18 C -0.05 -1.90 6.33 22.41 0.14 -1.76 15 19 Cl -0.04 -1.33 27.49 -2.72 -0.07 -1.41 15 20 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.07 0.90 7.66 -2.39 -0.02 0.88 15 22 H 0.07 0.90 7.66 -2.39 -0.02 0.88 15 23 H 0.17 3.61 6.28 -2.91 -0.02 3.59 15 24 H 0.15 5.63 5.02 -2.91 -0.01 5.62 15 25 H 0.28 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -60.99 264.96 4.50 -56.50 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.25 Total: 1.91 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 3.17 Total: -37.71 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.29 Total: -50.36 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.93 Total: -9.09 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.16 Total: -0.10 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.15 Total: -3.23 kcal Total: -60.99 4.50 -56.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258980535.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.589 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds