Wall clock time and date at job start Mon Mar 30 2020 07:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35977 * 117.00447 * 2 1 4 4 C 1.38608 * 120.09072 * 270.23977 * 3 2 1 5 5 Cl 1.73604 * 119.98718 * 0.03893 * 4 3 2 6 6 C 1.38359 * 120.02460 * 180.27032 * 4 3 2 7 7 C 1.38470 * 120.20911 * 359.74439 * 6 4 3 8 8 Cl 1.73592 * 119.91527 * 180.02562 * 7 6 4 9 9 C 1.38182 * 120.16996 * 359.97438 * 7 6 4 10 10 C 1.39022 * 119.97199 * 0.02562 * 9 7 6 11 11 S 1.76203 * 120.09651 * 179.97438 * 10 9 7 12 12 C 1.76200 * 100.00441 * 353.11713 * 11 10 9 13 13 H 1.08001 * 119.99816 * 354.33804 * 12 11 10 14 14 C 1.38677 * 120.00043 * 174.33425 * 12 11 10 15 15 N 1.31655 * 119.99836 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00221 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47037 * 90.00125 * 16 14 12 18 18 H 1.48507 * 109.47216 * 209.99752 * 16 14 12 19 19 H 1.48499 * 109.47113 * 329.99712 * 16 14 12 20 20 H 1.09002 * 109.46800 * 299.99530 * 1 2 3 21 21 H 1.08993 * 109.47400 * 59.99193 * 1 2 3 22 22 H 1.09000 * 109.47272 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.89813 * 179.76793 * 6 4 3 24 24 H 1.07999 * 120.01411 * 180.02562 * 9 7 6 25 25 H 0.97003 * 120.00121 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 2.3575 1.8330 -1.1993 5 17 1.9578 1.0647 -2.7039 6 6 2.9908 3.0631 -1.1977 7 6 3.3112 3.6802 -0.0003 8 17 4.1052 5.2239 -0.0072 9 6 2.9998 3.0709 1.2002 10 6 2.3635 1.8348 1.2071 11 16 1.9654 1.0545 2.7360 12 6 2.7669 2.1520 3.8576 13 1 3.3778 2.9587 3.4800 14 6 2.6132 1.9800 5.2250 15 7 3.2125 2.7997 6.0630 16 14 1.5571 0.5844 5.8780 17 1 2.3982 -0.6241 6.0716 18 1 0.9575 0.9833 7.1768 19 1 0.4761 0.2846 4.9050 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0276 0.0005 23 1 3.2356 3.5438 -2.1334 24 1 3.2505 3.5546 2.1326 25 1 3.1053 2.6792 7.0195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259137192.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:02 Heat of formation + Delta-G solvation = -42.607501 kcal Electronic energy + Delta-G solvation = -14760.518965 eV Core-core repulsion = 11916.864264 eV Total energy + Delta-G solvation = -2843.654701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93409 -38.62210 -37.66285 -37.12160 -34.84521 -32.18156 -31.04542 -28.08353 -27.76120 -24.33571 -23.54573 -20.40774 -18.83613 -18.14444 -17.57532 -17.21544 -16.66334 -16.16745 -15.71609 -15.14592 -14.73398 -14.63773 -14.16739 -13.77829 -13.30614 -13.22472 -13.10399 -12.85920 -12.72216 -12.27203 -12.20718 -12.00643 -11.71854 -11.31776 -10.98380 -10.91548 -10.61531 -9.64815 -8.81780 -8.60676 -6.38234 -0.20741 -0.08604 0.63155 0.99630 1.20010 1.28542 1.38170 1.53680 2.11306 2.13950 2.45214 2.72905 2.80250 3.94369 3.99086 4.09254 4.24897 4.46010 4.51233 4.62876 4.80112 4.97794 5.02859 5.24450 5.62866 6.11716 6.34391 6.78673 8.49793 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.007441 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.590000 B = 3761.949431 C = 5271.217962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.330 6.330 3 C 0.095 3.905 4 C -0.025 4.025 5 Cl -0.034 7.034 6 C -0.112 4.112 7 C -0.008 4.008 8 Cl -0.053 7.053 9 C -0.127 4.127 10 C -0.089 4.089 11 S 0.006 5.994 12 C -0.565 4.565 13 H 0.084 0.916 14 C 0.054 3.946 15 N -0.902 5.902 16 Si 0.906 3.094 17 H -0.259 1.259 18 H -0.256 1.256 19 H -0.222 1.222 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.121 0.879 23 H 0.172 0.828 24 H 0.136 0.864 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -2.038 -14.342 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.247 6.247 3 C 0.042 3.958 4 C -0.054 4.054 5 Cl -0.005 7.005 6 C -0.136 4.136 7 C -0.037 4.037 8 Cl -0.024 7.024 9 C -0.153 4.153 10 C -0.205 4.205 11 S 0.260 5.740 12 C -0.711 4.711 13 H 0.101 0.899 14 C -0.153 4.153 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.183 1.183 18 H -0.180 1.180 19 H -0.145 1.145 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.139 0.861 23 H 0.189 0.811 24 H 0.154 0.846 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.296 -3.175 -13.766 15.087 hybrid contribution 0.638 1.295 0.541 1.541 sum -4.658 -1.880 -13.225 14.147 Atomic orbital electron populations 1.23235 0.77347 1.05095 1.01065 1.86041 1.21532 1.23114 1.94037 1.17925 1.00843 0.87784 0.89247 1.20879 1.03340 0.94359 0.86809 1.98349 1.92376 1.80829 1.28973 1.20843 1.00913 0.93702 0.98122 1.20619 1.00139 0.89187 0.93755 1.98356 1.78272 1.26893 1.98887 1.21317 1.00544 0.94883 0.98552 1.22453 1.02627 0.97178 0.98227 1.82721 1.63886 1.33643 0.93767 1.22996 1.35604 1.18524 0.94011 0.89872 1.25624 0.95724 0.98132 0.95854 1.70015 1.42130 1.37554 1.04052 0.86038 0.81015 0.79494 0.80867 1.18297 1.18042 1.14549 0.93924 0.92271 0.86126 0.81102 0.84631 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.95 15 2 O -0.33 -11.01 9.25 -93.29 -0.86 -11.87 15 3 C 0.10 3.38 5.72 22.66 0.13 3.51 15 4 C -0.02 -0.74 6.33 22.39 0.14 -0.60 15 5 Cl -0.03 -0.84 28.50 -2.72 -0.08 -0.92 15 6 C -0.11 -3.17 9.60 22.35 0.21 -2.96 15 7 C -0.01 -0.26 6.32 22.31 0.14 -0.12 15 8 Cl -0.05 -1.57 28.95 -2.72 -0.08 -1.65 15 9 C -0.13 -5.13 9.00 22.44 0.20 -4.93 15 10 C -0.09 -3.66 6.11 22.76 0.14 -3.52 15 11 S 0.01 0.27 19.11 -56.49 -1.08 -0.81 15 12 C -0.56 -30.69 9.53 67.92 0.65 -30.04 15 13 H 0.08 4.85 5.20 -2.91 -0.02 4.83 15 14 C 0.05 2.95 5.50 84.82 0.47 3.42 15 15 N -0.90 -51.79 13.97 21.63 0.30 -51.48 15 16 Si 0.91 39.81 27.73 68.60 1.90 41.71 15 17 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 15 19 H -0.22 -9.18 6.74 99.48 0.67 -8.51 15 20 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.12 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.17 3.74 8.06 -2.91 -0.02 3.71 15 24 H 0.14 6.26 5.03 -2.91 -0.01 6.25 15 25 H 0.28 14.87 8.31 -92.71 -0.77 14.10 15 Total: -1.00 -58.20 268.73 4.65 -53.54 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.20 Total: 4.77 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 3.34 Total: -33.30 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.30 Total: -51.48 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.86 Total: -11.87 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.90 Total: 41.71 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.08 Total: -0.81 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.16 Total: -2.57 kcal Total: -58.20 4.65 -53.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259137192.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.936 kcal (2) G-P(sol) polarization free energy of solvation -58.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds