Wall clock time and date at job start Mon Mar 30 2020 07:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48488 * 109.47097 * 240.00220 * 3 2 1 5 5 H 1.48505 * 109.46637 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46968 * 119.99749 * 3 2 1 7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00160 * 359.97438 * 7 2 1 10 10 S 1.81408 * 109.47166 * 180.02562 * 9 7 2 11 11 O 1.42094 * 110.54229 * 68.37278 * 10 9 7 12 12 O 1.42099 * 110.53959 * 291.62305 * 10 9 7 13 13 C 1.76198 * 104.44966 * 180.02562 * 10 9 7 14 14 C 1.38207 * 120.00873 * 114.99715 * 13 10 9 15 15 C 1.38334 * 120.01267 * 179.97438 * 14 13 10 16 16 Cl 1.73597 * 119.98633 * 180.02562 * 15 14 13 17 17 C 1.38376 * 120.02559 * 359.97438 * 15 14 13 18 18 C 1.38161 * 120.00890 * 0.28182 * 17 15 14 19 19 C 1.38435 * 120.00568 * 294.97470 * 13 10 9 20 20 F 1.35102 * 120.01081 * 0.02585 * 19 13 10 21 21 H 0.97004 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47732 * 60.00253 * 9 7 2 23 23 H 1.09000 * 109.47548 * 299.99886 * 9 7 2 24 24 H 1.07995 * 119.99560 * 359.97438 * 14 13 10 25 25 H 1.08002 * 119.99124 * 179.97438 * 17 15 14 26 26 H 1.08004 * 120.00183 * 179.74692 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1265 -3.9383 1.2364 12 8 3.1265 -3.9383 -1.2376 13 6 1.4186 -5.3209 -0.0013 14 6 1.4364 -6.1769 -1.0862 15 6 0.6430 -7.3100 -1.0867 16 17 0.6664 -8.3851 -2.4495 17 6 -0.1686 -7.5875 -0.0008 18 6 -0.1912 -6.7297 1.0820 19 6 0.6064 -5.5977 1.0851 20 9 0.5885 -4.7612 2.1459 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5568 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.0699 -5.9611 -1.9338 25 1 -0.7882 -8.4721 -0.0019 26 1 -0.8277 -6.9442 1.9278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259150623.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:17 Heat of formation + Delta-G solvation = -121.944253 kcal Electronic energy + Delta-G solvation = -17139.636294 eV Core-core repulsion = 13864.204918 eV Total energy + Delta-G solvation = -3275.431376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.38587 -40.28199 -38.04078 -37.57345 -36.95107 -35.44972 -32.76765 -31.53890 -31.08079 -25.80528 -24.73666 -24.06894 -20.39288 -19.36108 -18.86426 -18.15975 -18.05915 -17.41697 -16.93224 -16.53956 -16.44334 -16.09511 -15.42435 -14.86378 -14.51710 -14.48875 -14.10886 -13.92619 -13.48252 -13.18658 -13.10870 -13.01744 -12.71839 -12.62323 -12.52583 -12.36121 -11.90048 -11.75457 -11.20183 -10.78970 -10.69383 -9.89562 -8.42973 -6.62506 -0.86747 -0.58293 -0.25561 0.87495 1.39567 1.43001 1.51118 1.93882 2.04469 2.32123 2.75908 2.86856 2.91543 3.22069 3.50286 3.72874 3.93675 4.09369 4.46174 4.52371 4.67652 4.68884 4.72063 4.80123 5.29591 5.35526 5.66384 6.45958 7.09492 8.69481 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.005424 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.643413 B = 5161.240036 C = 5409.225559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.572 4.572 8 H 0.069 0.931 9 C -0.402 4.402 10 S 2.485 3.515 11 O -0.976 6.976 12 O -0.971 6.971 13 C -0.695 4.695 14 C -0.003 4.003 15 C -0.071 4.071 16 Cl -0.041 7.041 17 C -0.017 4.017 18 C -0.146 4.146 19 C 0.171 3.829 20 F -0.128 7.128 21 H 0.276 0.724 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.161 0.839 25 H 0.197 0.803 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -15.788 -0.861 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.610 4.610 8 H 0.087 0.913 9 C -0.537 4.537 10 S 2.671 3.329 11 O -0.974 6.974 12 O -0.969 6.969 13 C -0.782 4.782 14 C -0.022 4.022 15 C -0.098 4.098 16 Cl -0.012 7.012 17 C -0.035 4.035 18 C -0.165 4.165 19 C 0.151 3.849 20 F -0.107 7.107 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.178 0.822 25 H 0.214 0.786 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.408 -15.809 -0.942 16.200 hybrid contribution -0.386 0.904 0.073 0.986 sum -3.793 -14.905 -0.869 15.405 Atomic orbital electron populations 1.70016 1.07530 1.29162 1.47538 1.25829 0.95991 1.03051 0.92625 0.85487 0.78727 0.77150 0.79920 1.18488 1.19269 1.18714 1.20726 0.93257 0.90224 1.56807 0.91280 1.27466 1.10014 1.09342 1.06854 1.05713 0.77529 0.76150 0.73535 1.93455 1.71621 1.86875 1.45419 1.93418 1.71571 1.86872 1.45010 1.30620 1.20739 1.24126 1.02736 1.20864 0.94973 0.90631 0.95761 1.21106 1.01780 0.94223 0.92723 1.98390 1.97780 1.62629 1.42390 1.21677 0.93971 0.99162 0.88660 1.21646 1.00333 0.92243 1.02246 1.17607 0.95044 0.89946 0.82327 1.91618 1.94814 1.70214 1.54007 0.91504 0.89344 0.89693 0.82189 0.78638 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.19 13.29 21.45 0.28 -50.91 15 2 C 0.03 1.59 5.46 84.65 0.46 2.05 15 3 Si 0.97 42.31 29.54 68.60 2.03 44.34 15 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.57 -32.05 9.13 25.60 0.23 -31.82 15 8 H 0.07 3.79 7.71 -2.91 -0.02 3.77 15 9 C -0.40 -20.10 5.73 71.24 0.41 -19.69 15 10 S 2.49 110.61 4.72 -56.49 -0.27 110.34 15 11 O -0.98 -48.20 17.35 -127.65 -2.22 -50.41 15 12 O -0.97 -45.48 16.74 -127.65 -2.14 -47.62 15 13 C -0.69 -24.44 5.58 22.31 0.12 -24.31 15 14 C 0.00 -0.09 9.28 22.29 0.21 0.12 15 15 C -0.07 -1.60 6.32 22.33 0.14 -1.46 15 16 Cl -0.04 -0.79 28.95 -2.72 -0.08 -0.87 15 17 C -0.02 -0.28 9.83 22.28 0.22 -0.07 15 18 C -0.15 -2.99 10.03 22.31 0.22 -2.76 15 19 C 0.17 5.37 7.19 22.37 0.16 5.53 15 20 F -0.13 -4.60 15.74 44.97 0.71 -3.89 15 21 H 0.28 14.43 8.31 -92.71 -0.77 13.66 15 22 H 0.09 4.34 8.14 -2.39 -0.02 4.32 15 23 H 0.08 4.27 7.59 -2.39 -0.02 4.26 15 24 H 0.16 4.76 7.21 -2.91 -0.02 4.74 15 25 H 0.20 1.55 8.06 -2.91 -0.02 1.53 15 26 H 0.19 2.41 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -69.67 271.28 1.72 -67.95 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.22 Total: 3.48 kcal Atomic # 6 Polarization: -74.59 SS G_CDS: 2.18 Total: -72.41 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.28 Total: -50.91 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: -4.35 Total: -98.03 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.71 Total: -3.89 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 110.61 SS G_CDS: -0.27 Total: 110.34 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -69.67 1.72 -67.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150623.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.998 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds