Wall clock time and date at job start Mon Mar 30 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48503 * 109.47266 * 240.00419 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46734 * 120.00558 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 11 11 F 1.39905 * 109.47069 * 59.99782 * 9 7 2 12 12 S 1.81399 * 109.47410 * 180.02562 * 9 7 2 13 13 O 1.42096 * 110.54122 * 291.62284 * 12 9 7 14 14 O 1.42097 * 110.54031 * 68.37453 * 12 9 7 15 15 C 1.76202 * 104.44776 * 179.97438 * 12 9 7 16 16 C 1.38238 * 120.00269 * 114.72281 * 15 12 9 17 17 C 1.38218 * 120.00885 * 179.76541 * 16 15 12 18 18 C 1.38259 * 120.02964 * 0.51445 * 17 16 15 19 19 C 1.38189 * 120.01237 * 359.74020 * 18 17 16 20 20 C 1.38333 * 120.01014 * 295.00025 * 15 12 9 21 21 Cl 1.73596 * 120.01068 * 359.95764 * 20 15 12 22 22 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99735 * 0.02562 * 16 15 12 24 24 H 1.08008 * 119.98456 * 180.27792 * 17 16 15 25 25 H 1.08004 * 119.99804 * 179.76731 * 18 17 16 26 26 H 1.08000 * 120.00852 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8897 11 9 0.4462 -2.5730 -1.1425 12 16 2.4298 -3.8780 -0.0005 13 8 3.1264 -3.9383 -1.2375 14 8 3.1265 -3.9383 1.2364 15 6 1.4185 -5.3209 0.0002 16 6 1.4314 -6.1746 -1.0869 17 6 0.6418 -7.3091 -1.0844 18 6 -0.1693 -7.5852 0.0007 19 6 -0.1870 -6.7297 1.0858 20 6 0.6072 -5.5966 1.0862 21 17 0.5859 -4.5217 2.4492 22 1 -0.4850 0.8401 0.0004 23 1 2.0616 -5.9574 -1.9366 24 1 0.6556 -7.9782 -1.9322 25 1 -0.7889 -8.4698 0.0005 26 1 -0.8209 -6.9452 1.9332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260373530.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:25 Heat of formation + Delta-G solvation = -115.717904 kcal Electronic energy + Delta-G solvation = -17618.758390 eV Core-core repulsion = 14343.597009 eV Total energy + Delta-G solvation = -3275.161381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.28230 -40.31613 -38.26059 -37.65080 -37.03749 -35.23747 -32.46855 -31.89112 -30.55415 -25.71808 -24.34809 -23.88036 -20.36323 -19.60357 -18.80496 -18.16066 -17.62131 -17.23404 -16.62015 -16.53898 -15.87372 -15.74616 -15.43186 -14.99819 -14.80442 -14.42164 -13.80537 -13.49371 -13.28477 -13.17378 -13.14563 -12.87384 -12.74985 -12.64433 -12.46608 -12.33994 -11.77997 -11.46838 -11.12988 -10.83367 -10.45354 -9.96065 -8.52744 -6.87569 -1.04859 -0.39146 0.04893 0.78406 1.36141 1.40709 1.49294 1.81222 2.22331 2.30612 2.64552 2.80114 3.15918 3.63917 3.90823 4.07573 4.16924 4.19108 4.32704 4.64060 4.70074 4.85964 4.99620 5.06621 5.19450 5.34488 5.66886 6.20686 6.94913 8.56188 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.007217 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.792795 B = 3879.001323 C = 4096.259963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.043 3.957 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.613 4.613 8 H 0.082 0.918 9 C -0.203 4.203 10 H 0.100 0.900 11 F -0.204 7.204 12 S 2.457 3.543 13 O -0.966 6.966 14 O -0.949 6.949 15 C -0.668 4.668 16 C -0.030 4.030 17 C -0.126 4.126 18 C -0.042 4.042 19 C -0.129 4.129 20 C 0.022 3.978 21 Cl -0.061 7.061 22 H 0.281 0.719 23 H 0.151 0.849 24 H 0.182 0.818 25 H 0.192 0.808 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -14.102 0.812 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.165 4.165 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.652 4.652 8 H 0.100 0.900 9 C -0.331 4.331 10 H 0.117 0.883 11 F -0.186 7.186 12 S 2.641 3.359 13 O -0.963 6.963 14 O -0.946 6.946 15 C -0.757 4.757 16 C -0.049 4.049 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.148 4.148 20 C -0.006 4.006 21 Cl -0.032 7.032 22 H 0.090 0.910 23 H 0.168 0.832 24 H 0.199 0.801 25 H 0.209 0.791 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.450 -13.921 0.918 14.165 hybrid contribution -0.478 1.066 0.170 1.181 sum -2.928 -12.855 1.088 13.229 Atomic orbital electron populations 1.70063 1.07832 1.29821 1.44136 1.25979 0.95989 1.03579 0.90951 0.85371 0.78763 0.76164 0.80280 1.18401 1.18821 1.17898 1.21239 0.94032 0.89959 1.59923 0.90028 1.28757 1.02279 1.12176 0.89891 0.88263 1.92755 1.76069 1.97193 1.52555 1.07019 0.77994 0.76673 0.74242 1.93407 1.71281 1.86521 1.45100 1.93497 1.70615 1.86217 1.44276 1.30252 1.19547 1.22756 1.03182 1.21313 0.96216 0.92821 0.94584 1.21910 0.95308 0.96439 1.00804 1.22051 0.95079 0.98502 0.90346 1.21644 0.98833 0.92231 1.02059 1.20852 0.97383 0.94411 0.87925 1.98443 1.97425 1.63647 1.43635 0.90952 0.83154 0.80118 0.79053 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.78 12.95 21.45 0.28 -50.50 15 2 C 0.04 2.37 5.42 84.65 0.46 2.83 15 3 Si 0.97 42.17 29.54 68.60 2.03 44.19 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.25 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.61 -35.07 8.88 25.60 0.23 -34.85 15 8 H 0.08 4.50 7.71 -2.91 -0.02 4.48 15 9 C -0.20 -10.79 3.57 71.24 0.25 -10.54 15 10 H 0.10 5.23 6.31 -2.39 -0.02 5.21 15 11 F -0.20 -11.33 16.66 44.97 0.75 -10.58 15 12 S 2.46 115.53 4.31 -56.49 -0.24 115.28 15 13 O -0.97 -47.98 16.74 -127.65 -2.14 -50.11 15 14 O -0.95 -46.53 16.46 -127.65 -2.10 -48.63 15 15 C -0.67 -25.19 5.58 22.29 0.12 -25.07 15 16 C -0.03 -0.92 9.50 22.27 0.21 -0.71 15 17 C -0.13 -2.51 10.05 22.27 0.22 -2.29 15 18 C -0.04 -0.71 10.05 22.26 0.22 -0.49 15 19 C -0.13 -2.97 9.83 22.29 0.22 -2.75 15 20 C 0.02 0.74 6.29 22.32 0.14 0.88 15 21 Cl -0.06 -2.23 24.84 -2.72 -0.07 -2.30 15 22 H 0.28 14.78 8.31 -92.71 -0.77 14.01 15 23 H 0.15 4.50 7.21 -2.91 -0.02 4.48 15 24 H 0.18 2.00 8.06 -2.91 -0.02 1.97 15 25 H 0.19 1.23 8.06 -2.91 -0.02 1.21 15 26 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -73.28 265.69 1.81 -71.47 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.22 Total: 4.15 kcal Atomic # 6 Polarization: -75.06 SS G_CDS: 2.08 Total: -72.98 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.28 Total: -50.50 kcal Atomic # 8 Polarization: -94.51 SS G_CDS: -4.24 Total: -98.74 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 0.75 Total: -10.58 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 115.53 SS G_CDS: -0.24 Total: 115.28 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.07 Total: -2.30 kcal Total: -73.28 1.81 -71.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373530.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.247 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds