Wall clock time and date at job start Mon Mar 30 2020 07:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48499 * 109.46916 * 240.00004 * 3 2 1 5 5 H 1.48502 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47218 * 119.99901 * 3 2 1 7 7 C 1.37876 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46894 * 60.00215 * 9 7 2 11 11 F 1.39893 * 109.47386 * 300.00274 * 9 7 2 12 12 S 1.81396 * 109.47114 * 180.02562 * 9 7 2 13 13 O 1.42100 * 110.54245 * 68.38012 * 12 9 7 14 14 O 1.42100 * 110.54309 * 291.62569 * 12 9 7 15 15 C 1.76203 * 104.44914 * 180.02562 * 12 9 7 16 16 C 1.38244 * 119.98741 * 89.99949 * 15 12 9 17 17 C 1.38217 * 120.01084 * 180.02562 * 16 15 12 18 18 C 1.38351 * 119.98541 * 0.25893 * 17 16 15 19 19 Cl 1.73604 * 120.00786 * 179.69323 * 18 17 16 20 20 C 1.38349 * 119.97465 * 359.42086 * 18 17 16 21 21 C 1.38212 * 119.98525 * 0.59771 * 20 18 17 22 22 H 0.97000 * 120.00439 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.99331 * 0.02562 * 16 15 12 24 24 H 1.08002 * 120.00169 * 179.97438 * 17 16 15 25 25 H 1.08008 * 120.00633 * 180.29755 * 20 18 17 26 26 H 1.08000 * 119.99226 * 179.67843 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6242 -2.5575 -0.8881 11 9 0.4473 -2.5725 1.1442 12 16 2.4300 -3.8778 0.0029 13 8 3.1267 -3.9371 1.2400 14 8 3.1268 -3.9392 -1.2340 15 6 1.4189 -5.3208 0.0035 16 6 1.0228 -5.8874 -1.1937 17 6 0.2292 -7.0191 -1.1939 18 6 -0.1732 -7.5816 0.0044 19 17 -1.1765 -8.9983 0.0048 20 6 0.2291 -7.0180 1.2021 21 6 1.0223 -5.8862 1.2010 22 1 -0.4851 0.8400 -0.0004 23 1 1.3335 -5.4457 -2.1290 24 1 -0.0805 -7.4614 -2.1292 25 1 -0.0808 -7.4596 2.1378 26 1 1.3320 -5.4431 2.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600064.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:27 Heat of formation + Delta-G solvation = -100.459609 kcal Electronic energy + Delta-G solvation = -17151.397212 eV Core-core repulsion = 13876.897480 eV Total energy + Delta-G solvation = -3274.499732 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.33264 -39.20780 -36.65446 -36.37532 -35.22905 -33.26569 -31.16127 -30.95159 -28.60336 -23.78955 -22.95883 -22.93366 -18.76326 -17.82115 -17.19068 -16.48247 -15.95084 -15.90576 -15.10569 -14.73274 -14.59186 -14.02595 -13.68955 -13.60184 -13.58604 -12.62062 -12.53441 -11.90173 -11.78309 -11.77244 -11.39313 -11.31600 -11.27250 -11.10130 -10.96479 -10.62936 -10.46697 -9.66359 -9.32801 -9.13222 -9.05385 -8.79103 -6.56333 -4.81805 0.55204 0.86224 1.21497 1.88296 3.13201 3.15803 3.19823 3.31601 3.52966 4.05409 4.47212 4.52896 4.74565 4.77160 4.92915 5.26090 5.39578 5.47976 5.84693 5.86930 5.95570 6.03856 6.13191 6.54097 6.65767 6.93816 7.34405 8.20255 8.95655 10.50555 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.035195 B = 0.005067 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.387078 B = 5524.704384 C = 5788.828148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.092 3.908 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.177 4.177 10 H 0.099 0.901 11 F -0.192 7.192 12 S 2.439 3.561 13 O -0.942 6.942 14 O -0.944 6.944 15 C -0.648 4.648 16 C -0.013 4.013 17 C -0.136 4.136 18 C 0.008 3.992 19 Cl -0.069 7.069 20 C -0.135 4.135 21 C -0.003 4.003 22 H 0.276 0.724 23 H 0.151 0.849 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -11.554 -1.025 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.120 4.120 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.617 4.617 8 H 0.102 0.898 9 C -0.307 4.307 10 H 0.117 0.883 11 F -0.173 7.173 12 S 2.619 3.381 13 O -0.939 6.939 14 O -0.941 6.941 15 C -0.731 4.731 16 C -0.032 4.032 17 C -0.155 4.155 18 C -0.019 4.019 19 Cl -0.040 7.040 20 C -0.154 4.154 21 C -0.022 4.022 22 H 0.086 0.914 23 H 0.169 0.831 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.602 -11.671 -0.996 11.823 hybrid contribution -0.752 0.380 0.047 0.844 sum -2.354 -11.291 -0.949 11.573 Atomic orbital electron populations 1.69971 1.06459 1.28753 1.43169 1.25025 0.95081 1.00128 0.91775 0.86263 0.79652 0.80309 0.79846 1.18972 1.20377 1.18959 1.20861 0.93720 0.88280 1.58863 0.89793 1.28524 1.01365 1.10537 0.90264 0.88330 1.92815 1.75712 1.96898 1.51856 1.08397 0.78412 0.76390 0.74870 1.93470 1.70404 1.85917 1.44132 1.93483 1.70218 1.86069 1.44350 1.31209 1.19604 1.23365 0.98951 1.20986 0.91615 0.93072 0.97484 1.21145 1.00025 0.97298 0.97059 1.21213 0.95212 0.89893 0.95579 1.98374 1.67745 1.38934 1.98983 1.21170 0.99918 0.97238 0.97097 1.20995 0.91033 0.92546 0.97655 0.91399 0.83129 0.84186 0.84161 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.08 12.95 55.43 0.72 -22.36 15 2 C 0.09 2.40 5.42 -17.82 -0.10 2.30 15 3 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 7 C -0.58 -15.20 8.88 -34.44 -0.31 -15.51 15 8 H 0.08 2.11 7.71 -52.49 -0.40 1.71 15 9 C -0.18 -4.20 3.76 36.00 0.14 -4.07 15 10 H 0.10 2.24 8.14 -51.92 -0.42 1.81 15 11 F -0.19 -4.78 16.66 2.25 0.04 -4.74 15 12 S 2.44 50.74 4.87 -107.50 -0.52 50.22 15 13 O -0.94 -21.52 17.13 -57.54 -0.99 -22.50 15 14 O -0.94 -20.66 17.12 -57.54 -0.99 -21.64 15 15 C -0.65 -11.25 5.65 -39.58 -0.22 -11.48 15 16 C -0.01 -0.19 9.47 -39.59 -0.37 -0.57 15 17 C -0.14 -1.78 9.83 -39.55 -0.39 -2.17 15 18 C 0.01 0.10 6.32 -39.50 -0.25 -0.15 15 19 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 15 20 C -0.13 -1.82 9.83 -39.55 -0.39 -2.21 15 21 C 0.00 -0.06 9.47 -39.59 -0.37 -0.43 15 22 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.15 2.04 7.57 -52.49 -0.40 1.65 15 24 H 0.14 1.44 8.06 -52.49 -0.42 1.01 15 25 H 0.14 1.51 8.06 -52.48 -0.42 1.09 15 26 H 0.15 2.29 7.57 -52.49 -0.40 1.89 15 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -30.78 272.60 -8.02 -38.81 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -1.60 Total: -0.13 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: -2.27 Total: -34.27 kcal Atomic # 7 Polarization: -23.08 SS G_CDS: 0.72 Total: -22.36 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.97 Total: -44.15 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.04 Total: -4.74 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 50.74 SS G_CDS: -0.52 Total: 50.22 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.78 -8.02 -38.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600064.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.652 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds