Wall clock time and date at job start Mon Mar 30 2020 07:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48499 * 109.46916 * 240.00004 * 3 2 1 5 5 H 1.48502 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47218 * 119.99901 * 3 2 1 7 7 C 1.37876 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46894 * 60.00215 * 9 7 2 11 11 F 1.39893 * 109.47386 * 300.00274 * 9 7 2 12 12 S 1.81396 * 109.47114 * 180.02562 * 9 7 2 13 13 O 1.42100 * 110.54245 * 68.38012 * 12 9 7 14 14 O 1.42100 * 110.54309 * 291.62569 * 12 9 7 15 15 C 1.76203 * 104.44914 * 180.02562 * 12 9 7 16 16 C 1.38244 * 119.98741 * 89.99949 * 15 12 9 17 17 C 1.38217 * 120.01084 * 180.02562 * 16 15 12 18 18 C 1.38351 * 119.98541 * 0.25893 * 17 16 15 19 19 Cl 1.73604 * 120.00786 * 179.69323 * 18 17 16 20 20 C 1.38349 * 119.97465 * 359.42086 * 18 17 16 21 21 C 1.38212 * 119.98525 * 0.59771 * 20 18 17 22 22 H 0.97000 * 120.00439 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.99331 * 0.02562 * 16 15 12 24 24 H 1.08002 * 120.00169 * 179.97438 * 17 16 15 25 25 H 1.08008 * 120.00633 * 180.29755 * 20 18 17 26 26 H 1.08000 * 119.99226 * 179.67843 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6242 -2.5575 -0.8881 11 9 0.4473 -2.5725 1.1442 12 16 2.4300 -3.8778 0.0029 13 8 3.1267 -3.9371 1.2400 14 8 3.1268 -3.9392 -1.2340 15 6 1.4189 -5.3208 0.0035 16 6 1.0228 -5.8874 -1.1937 17 6 0.2292 -7.0191 -1.1939 18 6 -0.1732 -7.5816 0.0044 19 17 -1.1765 -8.9983 0.0048 20 6 0.2291 -7.0180 1.2021 21 6 1.0223 -5.8862 1.2010 22 1 -0.4851 0.8400 -0.0004 23 1 1.3335 -5.4457 -2.1290 24 1 -0.0805 -7.4614 -2.1292 25 1 -0.0808 -7.4596 2.1378 26 1 1.3320 -5.4431 2.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600064.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:27 Heat of formation + Delta-G solvation = -120.652306 kcal Electronic energy + Delta-G solvation = -17152.272833 eV Core-core repulsion = 13876.897480 eV Total energy + Delta-G solvation = -3275.375353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.23639 -40.34165 -38.14081 -37.64999 -37.00040 -35.21563 -32.28497 -32.13711 -30.52000 -25.62796 -24.25639 -24.08308 -20.27014 -19.54992 -18.77742 -18.16428 -17.48734 -17.36272 -16.64299 -16.55478 -15.77837 -15.72133 -15.42818 -14.77187 -14.69074 -14.38367 -13.88007 -13.76333 -13.24127 -13.17709 -13.09804 -12.86933 -12.83622 -12.79167 -12.33916 -11.98178 -11.95004 -11.55681 -11.09826 -10.77829 -10.24792 -10.18847 -8.51486 -6.85760 -1.01570 -0.45649 0.10126 0.85884 1.38813 1.42433 1.51142 1.87456 2.17665 2.27873 2.77220 2.82437 3.14398 3.61138 3.74441 4.08771 4.12514 4.17896 4.40551 4.67593 4.74265 4.78264 4.90811 5.00470 5.02386 5.37364 5.52836 6.23192 6.97432 8.56894 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.035195 B = 0.005067 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.387078 B = 5524.704384 C = 5788.828148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.042 3.958 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.613 4.613 8 H 0.084 0.916 9 C -0.205 4.205 10 H 0.098 0.902 11 F -0.203 7.203 12 S 2.478 3.522 13 O -0.966 6.966 14 O -0.956 6.956 15 C -0.662 4.662 16 C -0.022 4.022 17 C -0.129 4.129 18 C 0.010 3.990 19 Cl -0.044 7.044 20 C -0.130 4.130 21 C -0.019 4.019 22 H 0.280 0.720 23 H 0.162 0.838 24 H 0.173 0.827 25 H 0.169 0.831 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -13.124 -1.417 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.652 4.652 8 H 0.102 0.898 9 C -0.333 4.333 10 H 0.116 0.884 11 F -0.185 7.185 12 S 2.661 3.339 13 O -0.963 6.963 14 O -0.954 6.954 15 C -0.751 4.751 16 C -0.041 4.041 17 C -0.148 4.148 18 C -0.017 4.017 19 Cl -0.015 7.015 20 C -0.150 4.150 21 C -0.038 4.038 22 H 0.090 0.910 23 H 0.180 0.820 24 H 0.191 0.809 25 H 0.187 0.813 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.937 -13.172 -1.391 13.386 hybrid contribution -0.734 0.601 0.147 0.960 sum -2.671 -12.571 -1.244 12.912 Atomic orbital electron populations 1.70050 1.07809 1.29780 1.44355 1.25963 0.95950 1.03630 0.91073 0.85375 0.78700 0.76305 0.80224 1.17805 1.19189 1.18627 1.21277 0.94164 0.90055 1.59657 0.89828 1.28709 1.02346 1.12374 0.89836 0.88419 1.92763 1.76104 1.97200 1.52420 1.06475 0.77444 0.76083 0.73889 1.93433 1.71152 1.86469 1.45245 1.93460 1.70600 1.86464 1.44843 1.30534 1.21500 1.22185 1.00913 1.21231 0.91936 0.93913 0.97016 1.21479 0.98565 0.96149 0.98583 1.21418 0.94568 0.90275 0.95475 1.98392 1.66828 1.37348 1.98942 1.21441 0.98663 0.96138 0.98709 1.21139 0.91900 0.93713 0.97094 0.91041 0.82020 0.80917 0.81322 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.21 12.95 21.45 0.28 -48.94 15 2 C 0.04 2.22 5.42 84.65 0.46 2.68 15 3 Si 0.97 40.79 29.54 68.60 2.03 42.81 15 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 15 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 15 7 C -0.61 -33.20 8.88 25.60 0.23 -32.98 15 8 H 0.08 4.35 7.71 -2.91 -0.02 4.32 15 9 C -0.20 -10.06 3.76 71.23 0.27 -9.79 15 10 H 0.10 4.64 8.14 -2.39 -0.02 4.62 15 11 F -0.20 -10.51 16.66 44.97 0.75 -9.76 15 12 S 2.48 104.55 4.87 -56.49 -0.28 104.28 15 13 O -0.97 -44.83 17.13 -127.65 -2.19 -47.02 15 14 O -0.96 -42.04 17.12 -127.65 -2.19 -44.22 15 15 C -0.66 -22.57 5.65 22.27 0.13 -22.45 15 16 C -0.02 -0.63 9.47 22.27 0.21 -0.42 15 17 C -0.13 -2.96 9.83 22.29 0.22 -2.75 15 18 C 0.01 0.22 6.32 22.32 0.14 0.36 15 19 Cl -0.04 -0.83 28.96 -2.72 -0.08 -0.91 15 20 C -0.13 -3.18 9.83 22.29 0.22 -2.96 15 21 C -0.02 -0.59 9.47 22.26 0.21 -0.38 15 22 H 0.28 14.35 8.31 -92.71 -0.77 13.58 15 23 H 0.16 4.15 7.57 -2.91 -0.02 4.13 15 24 H 0.17 2.80 8.06 -2.91 -0.02 2.78 15 25 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.15 4.53 7.57 -2.91 -0.02 4.51 15 Total: -1.00 -66.38 272.60 1.63 -64.76 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.22 Total: 7.69 kcal Atomic # 6 Polarization: -70.76 SS G_CDS: 2.08 Total: -68.68 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.28 Total: -48.94 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -4.37 Total: -91.24 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 0.75 Total: -9.76 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 104.55 SS G_CDS: -0.28 Total: 104.28 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -66.38 1.63 -64.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600064.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.895 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds