Wall clock time and date at job start Mon Mar 30 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48503 * 109.47161 * 269.99603 * 3 2 1 5 5 H 1.48493 * 109.47357 * 29.99774 * 3 2 1 6 6 H 1.48501 * 109.47159 * 149.99970 * 3 2 1 7 7 C 1.37873 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00579 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99877 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47362 * 300.00357 * 9 7 2 11 11 F 1.39895 * 109.47083 * 60.00558 * 9 7 2 12 12 S 1.81399 * 109.46953 * 180.02562 * 9 7 2 13 13 O 1.42101 * 110.54284 * 68.38093 * 12 9 7 14 14 O 1.42096 * 110.54930 * 291.62463 * 12 9 7 15 15 C 1.76199 * 104.44862 * 179.97438 * 12 9 7 16 16 C 1.38247 * 119.98503 * 90.00411 * 15 12 9 17 17 C 1.38216 * 120.01497 * 179.97438 * 16 15 12 18 18 C 1.38357 * 119.98603 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38219 * 119.98927 * 359.42057 * 20 18 17 22 22 H 0.97002 * 120.00065 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.99321 * 359.97438 * 16 15 12 24 24 H 1.08003 * 120.00776 * 179.97438 * 17 16 15 25 25 H 1.08000 * 120.00645 * 179.69150 * 20 18 17 26 26 H 1.07997 * 119.99421 * 180.29781 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 9 0.4464 -2.5730 -1.1425 12 16 2.4298 -3.8779 -0.0005 13 8 3.1265 -3.9383 1.2365 14 8 3.1266 -3.9383 -1.2374 15 6 1.4186 -5.3209 0.0002 16 6 1.0218 -5.8871 -1.1969 17 6 0.2291 -7.0193 -1.1970 18 6 -0.1678 -7.5857 0.0013 19 17 -1.1629 -9.0082 0.0019 20 6 0.2244 -7.0149 1.1989 21 6 1.0222 -5.8862 1.1978 22 1 -0.4850 0.8401 -0.0004 23 1 1.3313 -5.4446 -2.1323 24 1 -0.0812 -7.4613 -2.1323 25 1 -0.0892 -7.4537 2.1347 26 1 1.3324 -5.4434 2.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260600068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:29 Heat of formation + Delta-G solvation = -120.703258 kcal Electronic energy + Delta-G solvation = -17151.983286 eV Core-core repulsion = 13876.605724 eV Total energy + Delta-G solvation = -3275.377562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 277.997 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.23549 -40.34068 -38.14064 -37.65014 -37.00029 -35.21647 -32.28435 -32.13687 -30.52045 -25.62941 -24.25658 -24.08288 -20.27002 -19.55036 -18.77829 -18.16447 -17.48714 -17.36393 -16.64176 -16.55492 -15.77816 -15.72143 -15.42911 -14.77116 -14.69037 -14.38416 -13.87968 -13.77011 -13.23198 -13.17457 -13.09771 -12.88436 -12.85022 -12.79158 -12.32562 -11.98156 -11.94841 -11.53648 -11.10788 -10.78319 -10.24758 -10.18842 -8.51692 -6.85741 -1.01606 -0.45595 0.10146 0.85914 1.38784 1.40283 1.53015 1.87492 2.17641 2.27778 2.77070 2.82475 3.14391 3.61147 3.74471 4.08781 4.12538 4.17890 4.40570 4.67580 4.74276 4.78277 4.90831 5.00476 5.02363 5.37571 5.52856 6.23391 6.97430 8.56911 Molecular weight = 278.00amu Principal moments of inertia in cm(-1) A = 0.035276 B = 0.005063 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.555676 B = 5528.694517 C = 5790.921853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.041 3.959 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.255 1.255 7 C -0.612 4.612 8 H 0.084 0.916 9 C -0.205 4.205 10 H 0.098 0.902 11 F -0.203 7.203 12 S 2.478 3.522 13 O -0.957 6.957 14 O -0.966 6.966 15 C -0.662 4.662 16 C -0.019 4.019 17 C -0.130 4.130 18 C 0.010 3.990 19 Cl -0.044 7.044 20 C -0.129 4.129 21 C -0.022 4.022 22 H 0.280 0.720 23 H 0.151 0.849 24 H 0.169 0.831 25 H 0.173 0.827 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -13.126 1.413 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.166 4.166 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.650 4.650 8 H 0.102 0.898 9 C -0.333 4.333 10 H 0.116 0.884 11 F -0.185 7.185 12 S 2.661 3.339 13 O -0.954 6.954 14 O -0.963 6.963 15 C -0.751 4.751 16 C -0.039 4.039 17 C -0.149 4.149 18 C -0.017 4.017 19 Cl -0.015 7.015 20 C -0.148 4.148 21 C -0.041 4.041 22 H 0.090 0.910 23 H 0.169 0.831 24 H 0.187 0.813 25 H 0.191 0.809 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.941 -13.176 1.390 13.391 hybrid contribution -0.739 0.602 -0.151 0.966 sum -2.681 -12.574 1.239 12.916 Atomic orbital electron populations 1.70057 1.07801 1.29707 1.44420 1.25962 0.95955 1.03630 0.91094 0.85314 0.79105 0.76638 0.79471 1.18958 1.18925 1.17864 1.21305 0.94154 0.90035 1.59547 0.89839 1.28714 1.02333 1.12377 0.89859 0.88417 1.92763 1.76058 1.97195 1.52456 1.06476 0.77444 0.76085 0.73888 1.93460 1.70606 1.86471 1.44843 1.93432 1.71144 1.86463 1.45257 1.30536 1.21525 1.22162 1.00912 1.21142 0.91885 0.93722 0.97101 1.21444 0.98700 0.96106 0.98698 1.21418 0.94646 0.90202 0.95475 1.98391 1.67326 1.36849 1.98941 1.21478 0.98574 0.96129 0.98594 1.21229 0.91901 0.93956 0.97010 0.91050 0.83106 0.81324 0.80921 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.16 12.95 21.45 0.28 -48.88 15 2 C 0.04 2.20 5.42 84.65 0.46 2.66 15 3 Si 0.97 40.83 29.54 68.60 2.03 42.85 15 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.61 -33.13 8.88 25.60 0.23 -32.90 15 8 H 0.08 4.35 7.71 -2.91 -0.02 4.33 15 9 C -0.21 -10.06 3.76 71.24 0.27 -9.79 15 10 H 0.10 4.64 8.14 -2.39 -0.02 4.62 15 11 F -0.20 -10.50 16.66 44.97 0.75 -9.75 15 12 S 2.48 104.54 4.87 -56.49 -0.28 104.26 15 13 O -0.96 -42.07 17.12 -127.65 -2.19 -44.26 15 14 O -0.97 -44.80 17.13 -127.65 -2.19 -46.99 15 15 C -0.66 -22.57 5.65 22.27 0.13 -22.45 15 16 C -0.02 -0.59 9.47 22.27 0.21 -0.38 15 17 C -0.13 -3.18 9.83 22.29 0.22 -2.96 15 18 C 0.01 0.22 6.32 22.32 0.14 0.36 15 19 Cl -0.04 -0.83 28.96 -2.72 -0.08 -0.91 15 20 C -0.13 -2.96 9.83 22.29 0.22 -2.75 15 21 C -0.02 -0.63 9.47 22.27 0.21 -0.42 15 22 H 0.28 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.15 4.53 7.57 -2.91 -0.02 4.51 15 24 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.17 2.81 8.06 -2.91 -0.02 2.78 15 26 H 0.16 4.15 7.57 -2.91 -0.02 4.13 15 Total: -1.00 -66.38 272.61 1.63 -64.75 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.22 Total: 7.54 kcal Atomic # 6 Polarization: -70.71 SS G_CDS: 2.08 Total: -68.63 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.28 Total: -48.88 kcal Atomic # 8 Polarization: -86.87 SS G_CDS: -4.37 Total: -91.24 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 0.75 Total: -9.75 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 104.54 SS G_CDS: -0.28 Total: 104.26 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -66.38 1.63 -64.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.951 kcal (2) G-P(sol) polarization free energy of solvation -66.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds