Wall clock time and date at job start Mon Mar 30 2020 07:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30658 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47447 * 239.99577 * 3 2 1 5 5 H 1.48503 * 109.47183 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47201 * 119.99759 * 3 2 1 7 7 C 1.40135 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.41312 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.33931 * 118.43191 * 359.97420 * 9 7 2 11 11 C 1.31310 * 122.16963 * 179.74400 * 10 9 7 12 12 C 1.41075 * 118.28709 * 0.52182 * 11 10 9 13 13 C 1.39795 * 122.77667 * 179.78410 * 12 11 10 14 14 C 1.36524 * 119.36162 * 179.72057 * 13 12 11 15 15 C 1.39240 * 121.65684 * 0.02562 * 14 13 12 16 16 Br 1.89096 * 119.15191 * 179.97438 * 15 14 13 17 17 C 1.36349 * 121.69395 * 359.97245 * 15 14 13 18 18 C 1.40509 * 119.31401 * 0.04478 * 17 15 14 19 19 N 1.33023 * 118.42719 * 179.97438 * 9 7 2 20 20 H 0.97008 * 119.99300 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.85788 * 180.27858 * 11 10 9 22 22 H 1.08002 * 120.31467 * 359.69497 * 13 12 11 23 23 H 1.07997 * 119.17155 * 179.97438 * 14 13 12 24 24 H 1.07998 * 120.33919 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2757 2.7464 -0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0071 -1.2137 0.0005 8 1 3.0872 -1.2137 0.0010 9 6 1.3005 -2.4374 0.0005 10 7 -0.0383 -2.4006 0.0005 11 6 -0.7677 -3.4925 -0.0044 12 6 -0.1061 -4.7385 0.0014 13 6 -0.7893 -5.9581 0.0013 14 6 -0.0783 -7.1236 0.0014 15 6 1.3141 -7.1303 0.0020 16 35 2.2273 -8.7861 0.0028 17 6 2.0360 -5.9736 0.0021 18 6 1.3608 -4.7413 0.0025 19 7 1.9969 -3.5708 0.0005 20 1 -0.4849 0.8402 -0.0004 21 1 -1.8463 -3.4381 -0.0088 22 1 -1.8691 -5.9781 0.0016 23 1 -0.6092 -8.0641 0.0017 24 1 3.1155 -6.0042 0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175179.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:09 Heat of formation + Delta-G solvation = 60.318663 kcal Electronic energy + Delta-G solvation = -13175.309632 eV Core-core repulsion = 10713.663188 eV Total energy + Delta-G solvation = -2461.646444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49637 -36.66986 -33.86150 -32.77595 -31.39072 -29.66117 -28.77167 -26.53635 -23.16322 -22.37603 -21.14501 -18.58010 -16.82960 -16.29803 -15.69860 -14.87781 -13.84398 -13.78121 -13.55715 -13.22561 -12.62714 -12.02333 -11.81984 -11.49545 -11.38643 -10.99700 -10.94451 -10.50766 -10.22942 -9.93209 -9.90841 -9.47593 -9.33578 -8.02061 -7.60258 -7.56325 -6.86932 -4.95354 1.29378 1.80613 2.06175 2.86695 2.89877 2.92951 3.15700 3.66455 3.80962 4.49992 5.27636 5.53315 5.58040 5.67262 5.73177 5.84402 6.06573 6.27432 6.54231 6.73374 6.77792 6.91876 7.00582 7.23508 7.49802 7.86197 8.15053 8.24322 8.81238 9.78914 9.96705 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.048792 B = 0.004547 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.722385 B = 6156.717537 C = 6720.597911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.058 3.942 3 Si 0.927 3.073 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.364 4.364 8 H 0.101 0.899 9 C 0.381 3.619 10 N -0.474 5.474 11 C 0.182 3.818 12 C -0.266 4.266 13 C -0.024 4.024 14 C -0.199 4.199 15 C -0.031 4.031 16 Br -0.083 7.083 17 C -0.124 4.124 18 C 0.220 3.780 19 N -0.607 5.607 20 H 0.283 0.717 21 H 0.146 0.854 22 H 0.120 0.880 23 H 0.114 0.886 24 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -8.691 -0.006 8.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.171 4.171 3 Si 0.749 3.251 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.396 4.396 8 H 0.119 0.881 9 C 0.148 3.852 10 N -0.186 5.186 11 C -0.006 4.006 12 C -0.275 4.275 13 C -0.046 4.046 14 C -0.221 4.221 15 C -0.113 4.113 16 Br 0.002 6.998 17 C -0.147 4.147 18 C 0.078 3.922 19 N -0.330 5.330 20 H 0.094 0.906 21 H 0.163 0.837 22 H 0.138 0.862 23 H 0.132 0.868 24 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.084 -8.071 -0.004 8.071 hybrid contribution -0.484 0.126 0.001 0.500 sum -0.401 -7.945 -0.002 7.955 Atomic orbital electron populations 1.70096 1.07582 1.29235 1.24515 1.26318 0.95238 1.02083 0.93468 0.86046 0.79934 0.78565 0.80529 1.18355 1.19743 1.18349 1.19683 0.95407 0.87692 1.36838 0.88145 1.19894 0.85174 0.91441 0.88644 1.68961 1.08020 1.29047 1.12561 1.23425 0.99356 0.87293 0.90553 1.20309 0.95541 0.95492 1.16153 1.20573 0.98416 0.91168 0.94427 1.20134 0.91447 0.98249 1.12222 1.21141 0.94508 0.89665 1.05998 1.96559 1.77669 1.27726 1.97860 1.20350 0.99313 0.89276 1.05717 1.19742 0.88837 0.92652 0.90938 1.69195 1.37820 0.96806 1.29181 0.90584 0.83724 0.86237 0.86775 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.77 11.35 55.56 0.63 -16.14 14 2 C 0.06 1.37 5.50 -17.34 -0.10 1.27 14 3 Si 0.93 17.09 29.56 -169.99 -5.02 12.06 14 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 14 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 14 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.36 -9.40 9.34 -37.70 -0.35 -9.75 14 8 H 0.10 2.49 7.85 -52.48 -0.41 2.08 14 9 C 0.38 10.36 7.34 -158.37 -1.16 9.20 14 10 N -0.47 -12.29 7.66 -12.31 -0.09 -12.38 14 11 C 0.18 4.05 11.21 -16.70 -0.19 3.87 14 12 C -0.27 -5.83 5.89 -104.83 -0.62 -6.44 14 13 C -0.02 -0.43 9.84 -39.62 -0.39 -0.82 14 14 C -0.20 -3.45 9.62 -39.83 -0.38 -3.84 14 15 C -0.03 -0.57 6.17 -39.89 -0.25 -0.82 14 16 Br -0.08 -1.27 33.62 -68.01 -2.29 -3.55 14 17 C -0.12 -2.61 9.73 -39.41 -0.38 -2.99 14 18 C 0.22 5.29 6.77 -83.00 -0.56 4.72 14 19 N -0.61 -16.21 10.37 -9.53 -0.10 -16.30 14 20 H 0.28 6.06 8.29 -40.82 -0.34 5.73 14 21 H 0.15 2.63 8.06 -52.49 -0.42 2.20 14 22 H 0.12 1.71 8.06 -52.49 -0.42 1.29 14 23 H 0.11 1.69 8.06 -52.49 -0.42 1.27 14 24 H 0.13 2.58 8.06 -52.49 -0.42 2.16 14 LS Contribution 243.66 15.07 3.67 3.67 Total: -1.00 -27.82 243.66 -8.82 -36.64 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.24 Total: 1.62 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.38 Total: -5.60 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.44 Total: -44.83 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.02 Total: 12.06 kcal Atomic # 35 Polarization: -1.27 SS G_CDS: -2.29 Total: -3.55 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.82 -8.82 -36.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175179.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.954 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds