Wall clock time and date at job start Mon Mar 30 2020 07:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30503 * 1 3 3 Si 1.86806 * 119.99978 * 2 1 4 4 H 1.48497 * 109.46964 * 240.00082 * 3 2 1 5 5 H 1.48497 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46933 * 120.00092 * 3 2 1 7 7 C 1.40437 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.40641 * 119.99922 * 359.97438 * 7 2 1 10 10 N 1.34140 * 121.35984 * 0.24395 * 9 7 2 11 11 C 1.31650 * 121.19203 * 180.25561 * 10 9 7 12 12 N 1.31455 * 123.91451 * 359.47717 * 11 10 9 13 13 C 1.33686 * 121.29193 * 0.25802 * 12 11 10 14 14 C 1.40492 * 122.21473 * 180.02562 * 13 12 11 15 15 Br 1.89101 * 120.26644 * 0.02562 * 14 13 12 16 16 C 1.36463 * 119.47233 * 179.97438 * 14 13 12 17 17 C 1.39142 * 121.05411 * 0.02562 * 16 14 13 18 18 C 1.36788 * 120.91188 * 359.97438 * 17 16 14 19 19 C 1.39222 * 119.49203 * 359.97438 * 18 17 16 20 20 H 0.96998 * 120.00491 * 359.97438 * 1 2 3 21 21 H 1.08002 * 118.04693 * 179.76497 * 11 10 9 22 22 H 1.08005 * 119.47661 * 180.02562 * 16 14 13 23 23 H 1.08007 * 119.54433 * 179.97438 * 17 16 14 24 24 H 1.08001 * 120.25665 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0928 1.6964 -1.2125 5 1 1.2740 2.7465 0.0006 6 1 3.0928 1.6964 1.2125 7 6 2.0073 -1.2162 -0.0005 8 1 3.0873 -1.2162 -0.0001 9 6 1.3041 -2.4342 -0.0005 10 7 -0.0369 -2.4661 -0.0049 11 6 -0.6918 -3.6081 0.0001 12 7 -0.1104 -4.7871 -0.0003 13 6 1.2213 -4.9045 -0.0010 14 6 1.8630 -6.1543 -0.0020 15 35 0.8453 -7.7481 -0.0033 16 6 3.2265 -6.2090 -0.0032 17 6 3.9915 -5.0467 -0.0028 18 6 3.3975 -3.8145 -0.0018 19 6 2.0082 -3.7234 -0.0017 20 1 -0.4851 0.8400 0.0004 21 1 -1.7713 -3.5745 0.0001 22 1 3.7199 -7.1698 -0.0044 23 1 5.0692 -5.1184 -0.0033 24 1 4.0015 -2.9192 -0.0019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261178293.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:11 Heat of formation + Delta-G solvation = 34.414601 kcal Electronic energy + Delta-G solvation = -13407.935671 eV Core-core repulsion = 10945.165943 eV Total energy + Delta-G solvation = -2462.769728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.16510 -38.01489 -36.25482 -34.02105 -32.33415 -31.66727 -29.63007 -28.58810 -24.73960 -24.45401 -22.30189 -20.06436 -18.97264 -17.76171 -17.19381 -16.40711 -15.42695 -15.27766 -15.16520 -14.69670 -14.30638 -13.35634 -13.28998 -13.06769 -12.88353 -12.86130 -12.28926 -11.97374 -11.89013 -11.47244 -11.01421 -10.74854 -10.71184 -9.82779 -9.39186 -9.02663 -8.54358 -6.95723 -0.17569 0.38295 0.95478 1.19685 1.40219 1.56264 1.65349 2.11864 2.41965 2.81850 3.73453 3.84486 3.95649 4.15338 4.27045 4.40275 4.50003 4.80246 4.93888 5.02234 5.22439 5.40040 5.62874 5.67877 5.88432 6.04243 6.32206 6.58835 7.07661 8.05530 8.24949 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.041130 B = 0.005861 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.603485 B = 4776.171846 C = 5446.932590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.012 3.988 3 Si 1.003 2.997 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.371 4.371 8 H 0.121 0.879 9 C 0.232 3.768 10 N -0.589 5.589 11 C 0.310 3.690 12 N -0.650 5.650 13 C 0.180 3.820 14 C -0.142 4.142 15 Br -0.053 7.053 16 C -0.048 4.048 17 C -0.178 4.178 18 C -0.043 4.043 19 C -0.235 4.235 20 H 0.296 0.704 21 H 0.170 0.830 22 H 0.154 0.846 23 H 0.163 0.837 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -4.287 0.006 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.216 4.216 3 Si 0.820 3.180 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.402 4.402 8 H 0.139 0.861 9 C 0.104 3.896 10 N -0.314 5.314 11 C 0.019 3.981 12 N -0.377 5.377 13 C 0.052 3.948 14 C -0.224 4.224 15 Br 0.032 6.968 16 C -0.070 4.070 17 C -0.199 4.199 18 C -0.063 4.063 19 C -0.244 4.244 20 H 0.107 0.893 21 H 0.187 0.813 22 H 0.172 0.828 23 H 0.181 0.819 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.688 -4.782 -0.001 7.431 hybrid contribution 0.598 0.801 0.003 1.000 sum 6.287 -3.981 0.003 7.441 Atomic orbital electron populations 1.70071 1.09738 1.31332 1.21594 1.27469 0.95912 1.05501 0.92738 0.84922 0.78602 0.73483 0.80947 1.17318 1.19023 1.17322 1.20440 0.96476 0.89247 1.34028 0.86084 1.20509 0.89036 0.91477 0.88611 1.69377 1.08391 1.27046 1.26556 1.24639 1.00686 0.84270 0.88510 1.68494 1.09530 1.28032 1.31682 1.18713 0.90771 0.92084 0.93199 1.21343 0.94770 0.89648 1.16665 1.96421 1.74664 1.27752 1.97999 1.21067 0.90561 1.00582 0.94767 1.21015 1.01114 0.90647 1.07096 1.21073 0.92294 0.99277 0.93632 1.20720 0.96270 0.95147 1.12220 0.89294 0.81315 0.82804 0.81943 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -34.01 11.56 21.91 0.25 -33.75 14 2 C 0.01 0.53 5.50 85.43 0.47 1.00 14 3 Si 1.00 31.29 29.56 68.60 2.03 33.32 14 4 H -0.25 -7.41 7.11 99.48 0.71 -6.70 14 5 H -0.27 -8.02 7.11 99.48 0.71 -7.31 14 6 H -0.25 -7.41 7.11 99.48 0.71 -6.70 14 7 C -0.37 -17.35 8.91 23.39 0.21 -17.15 14 8 H 0.12 4.86 6.36 -2.91 -0.02 4.85 14 9 C 0.23 12.21 6.76 41.65 0.28 12.49 14 10 N -0.59 -32.46 8.09 -189.29 -1.53 -33.99 14 11 C 0.31 16.14 12.16 181.03 2.20 18.34 14 12 N -0.65 -33.63 9.83 -194.02 -1.91 -35.54 14 13 C 0.18 8.91 6.62 40.32 0.27 9.18 14 14 C -0.14 -5.93 6.24 22.40 0.14 -5.79 14 15 Br -0.05 -1.97 33.27 -20.37 -0.68 -2.64 14 16 C -0.05 -1.64 9.68 22.07 0.21 -1.42 14 17 C -0.18 -5.69 9.97 22.15 0.22 -5.47 14 18 C -0.04 -1.66 9.48 22.17 0.21 -1.45 14 19 C -0.24 -11.39 5.91 -19.86 -0.12 -11.51 14 20 H 0.30 12.52 8.29 -92.71 -0.77 11.75 14 21 H 0.17 7.83 8.06 -2.91 -0.02 7.81 14 22 H 0.15 4.04 8.06 -2.91 -0.02 4.02 14 23 H 0.16 3.67 8.06 -2.91 -0.02 3.65 14 24 H 0.14 4.72 6.58 -2.91 -0.02 4.70 14 Total: -1.00 -61.83 240.26 3.51 -58.32 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.24 Total: 16.07 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.10 Total: -1.78 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.18 Total: -103.29 kcal Atomic # 14 Polarization: 31.29 SS G_CDS: 2.03 Total: 33.32 kcal Atomic # 35 Polarization: -1.97 SS G_CDS: -0.68 Total: -2.64 kcal Total: -61.83 3.51 -58.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261178293.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.737 kcal (2) G-P(sol) polarization free energy of solvation -61.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds