Wall clock time and date at job start Mon Mar 30 2020 07:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30498 * 1 3 3 Si 1.86803 * 120.00163 * 2 1 4 4 H 1.48492 * 109.47431 * 89.99594 * 3 2 1 5 5 H 1.48506 * 109.46842 * 210.00124 * 3 2 1 6 6 H 1.48497 * 109.46676 * 329.99318 * 3 2 1 7 7 C 1.40445 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00045 * 15.09771 * 7 2 1 9 9 C 1.40669 * 120.00098 * 195.10090 * 7 2 1 10 10 N 1.34148 * 121.35497 * 8.60727 * 9 7 2 11 11 C 1.31665 * 121.19789 * 179.71129 * 10 9 7 12 12 N 1.31441 * 123.91153 * 0.60002 * 11 10 9 13 13 C 1.33732 * 121.28658 * 359.69843 * 12 11 10 14 14 C 1.40340 * 122.19552 * 179.97438 * 13 12 11 15 15 C 1.36446 * 119.49783 * 180.02562 * 14 13 12 16 16 Br 1.89103 * 119.48344 * 179.97438 * 15 14 13 17 17 C 1.39304 * 121.04069 * 0.02562 * 15 14 13 18 18 C 1.36734 * 120.87725 * 0.02562 * 17 15 14 19 19 C 1.39261 * 119.48692 * 359.97438 * 18 17 15 20 20 H 0.96998 * 119.99955 * 174.80888 * 1 2 3 21 21 H 1.08005 * 118.04309 * 180.27918 * 11 10 9 22 22 H 1.07999 * 120.24915 * 0.02562 * 14 13 12 23 23 H 1.07998 * 119.55712 * 180.02562 * 17 15 14 24 24 H 1.08008 * 120.25357 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.4865 2.0465 1.4000 5 1 3.5366 1.4401 -0.7001 6 1 1.4365 2.6525 -0.7002 7 6 2.0072 -1.2163 0.0005 8 1 1.4952 -2.1356 -0.2427 9 6 3.3775 -1.2372 0.3179 10 7 4.0018 -0.1469 0.7880 11 6 5.2833 -0.1715 1.0894 12 7 6.0490 -1.2309 0.9509 13 6 5.5594 -2.3858 0.4872 14 6 6.3596 -3.5282 0.3313 15 6 5.8027 -4.6782 -0.1474 16 35 6.8814 -6.2171 -0.3580 17 6 4.4523 -4.7363 -0.4844 18 6 3.6465 -3.6405 -0.3450 19 6 4.1844 -2.4514 0.1410 20 1 -0.4850 -0.8366 -0.0760 21 1 5.7333 0.7342 1.4683 22 1 7.4081 -3.4972 0.5883 23 1 4.0364 -5.6592 -0.8607 24 1 2.6009 -3.6967 -0.6098 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261203123.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:08 Heat of formation + Delta-G solvation = 19.974236 kcal Electronic energy + Delta-G solvation = -13388.457032 eV Core-core repulsion = 10925.061122 eV Total energy + Delta-G solvation = -2463.395909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.48034 -38.36951 -36.51687 -34.33341 -33.21640 -31.28307 -30.51183 -28.38469 -24.94364 -24.31725 -22.56733 -20.85568 -19.03448 -18.48919 -17.31309 -16.20040 -15.72886 -15.54580 -15.31959 -14.99891 -14.46334 -14.11882 -13.74360 -13.44733 -13.02503 -12.65293 -12.20844 -12.03285 -11.77021 -11.49035 -11.32121 -11.18332 -10.87592 -9.87382 -9.82206 -9.36584 -9.30051 -7.22532 -0.34980 0.00077 0.52215 0.99743 1.56997 1.71460 1.95593 2.12863 2.38007 2.62319 3.53938 3.59375 3.81244 3.86991 3.91011 4.15863 4.45065 4.47227 4.87955 5.03333 5.05664 5.16308 5.35702 5.40400 5.58769 5.77297 6.00867 6.26797 6.71567 7.59006 7.83506 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.043521 B = 0.005407 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.210432 B = 5177.125690 C = 5761.390021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.027 3.973 3 Si 1.168 2.832 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.313 1.313 7 C -0.416 4.416 8 H 0.101 0.899 9 C 0.246 3.754 10 N -0.655 5.655 11 C 0.338 3.662 12 N -0.643 5.643 13 C 0.171 3.829 14 C -0.120 4.120 15 C -0.048 4.048 16 Br -0.035 7.035 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.217 4.217 20 H 0.298 0.702 21 H 0.195 0.805 22 H 0.140 0.860 23 H 0.153 0.847 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -9.256 -1.807 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.199 4.199 3 Si 0.997 3.003 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.244 1.244 7 C -0.449 4.449 8 H 0.118 0.882 9 C 0.118 3.882 10 N -0.386 5.386 11 C 0.048 3.952 12 N -0.370 5.370 13 C 0.047 3.953 14 C -0.142 4.142 15 C -0.129 4.129 16 Br 0.050 6.950 17 C -0.174 4.174 18 C -0.068 4.068 19 C -0.224 4.224 20 H 0.110 0.890 21 H 0.212 0.788 22 H 0.158 0.842 23 H 0.171 0.829 24 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.360 -7.583 -1.480 10.670 hybrid contribution -0.692 -2.118 -0.186 2.236 sum 6.668 -9.701 -1.666 11.889 Atomic orbital electron populations 1.70520 1.08411 1.34436 1.25085 1.28598 0.95340 1.07612 0.88351 0.81785 0.71892 0.68178 0.78433 1.20449 1.21180 1.24400 1.21155 0.92684 0.97890 1.33217 0.88153 1.20172 0.93165 0.86915 0.87910 1.67707 1.12683 1.29248 1.28945 1.24551 0.86239 0.96141 0.88230 1.68498 1.38800 1.00318 1.29367 1.18916 0.90254 0.93150 0.92975 1.20533 1.00113 0.90274 1.03265 1.21506 0.95061 0.92737 1.03638 1.96622 1.67630 1.34099 1.96652 1.20843 0.91569 0.99889 1.05069 1.20838 1.00096 0.90839 0.95029 1.20645 0.95905 0.97337 1.08523 0.88951 0.78839 0.84197 0.82897 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.52 13.63 21.91 0.30 -35.22 14 2 C 0.03 1.28 5.52 85.43 0.47 1.75 14 3 Si 1.17 50.37 26.03 68.60 1.79 52.15 14 4 H -0.28 -11.93 7.11 99.48 0.71 -11.23 14 5 H -0.28 -12.77 6.49 99.48 0.65 -12.12 14 6 H -0.31 -12.91 7.11 99.48 0.71 -12.21 14 7 C -0.42 -19.76 9.26 23.40 0.22 -19.55 14 8 H 0.10 4.53 6.62 -2.91 -0.02 4.51 14 9 C 0.25 11.97 6.47 41.64 0.27 12.24 14 10 N -0.66 -31.55 5.23 -189.30 -0.99 -32.54 14 11 C 0.34 14.99 12.16 181.03 2.20 17.20 14 12 N -0.64 -29.29 10.39 -194.09 -2.02 -31.31 14 13 C 0.17 7.65 6.63 40.28 0.27 7.92 14 14 C -0.12 -4.53 9.73 22.36 0.22 -4.32 14 15 C -0.05 -1.60 6.18 22.11 0.14 -1.46 14 16 Br -0.04 -0.92 33.65 -20.37 -0.69 -1.60 14 17 C -0.15 -4.99 9.70 22.17 0.22 -4.78 14 18 C -0.05 -1.82 9.48 22.16 0.21 -1.61 14 19 C -0.22 -9.83 5.91 -19.86 -0.12 -9.95 14 20 H 0.30 12.98 8.72 -92.71 -0.81 12.17 14 21 H 0.20 7.00 8.06 -2.91 -0.02 6.98 14 22 H 0.14 4.91 8.06 -2.91 -0.02 4.89 14 23 H 0.15 3.99 8.06 -2.91 -0.02 3.96 14 24 H 0.14 4.82 6.61 -2.91 -0.02 4.80 14 Total: -1.00 -52.96 236.81 3.62 -49.33 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.14 Total: 1.74 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.09 Total: -2.56 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -2.71 Total: -99.07 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.79 Total: 52.15 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.60 kcal Total: -52.96 3.62 -49.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203123.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.307 kcal (2) G-P(sol) polarization free energy of solvation -52.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds