Wall clock time and date at job start Mon Mar 30 2020 07:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30509 * 1 3 3 Si 1.86807 * 119.99669 * 2 1 4 4 H 1.48496 * 109.47118 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46828 * 119.99808 * 3 2 1 6 6 H 1.48494 * 109.47144 * 239.99701 * 3 2 1 7 7 C 1.40447 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99963 * 3.34416 * 7 2 1 9 9 C 1.40621 * 119.99688 * 183.33743 * 7 2 1 10 10 N 1.34147 * 121.36091 * 6.91562 * 9 7 2 11 11 C 1.31654 * 121.18787 * 180.02562 * 10 9 7 12 12 N 1.31435 * 123.91794 * 359.97438 * 11 10 9 13 13 C 1.33732 * 121.31483 * 0.02562 * 12 11 10 14 14 C 1.40387 * 122.12592 * 180.02562 * 13 12 11 15 15 C 1.36302 * 119.65146 * 179.19662 * 14 13 12 16 16 C 1.39321 * 121.05579 * 0.77390 * 15 14 13 17 17 Br 1.89096 * 119.63747 * 179.47937 * 16 15 14 18 18 C 1.37866 * 120.71990 * 359.44990 * 16 15 14 19 19 C 1.39215 * 119.35899 * 0.03015 * 18 16 15 20 20 H 0.97000 * 119.99570 * 174.86851 * 1 2 3 21 21 H 1.08001 * 118.03893 * 179.97438 * 11 10 9 22 22 H 1.08000 * 120.17016 * 359.95110 * 14 13 12 23 23 H 1.08004 * 119.47281 * 180.25091 * 15 14 13 24 24 H 1.07999 * 120.32007 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 1.2740 2.7465 -0.0006 5 1 3.0927 1.6965 1.2125 6 1 3.0928 1.6965 -1.2124 7 6 2.0073 -1.2163 0.0005 8 1 1.4688 -2.1507 -0.0536 9 6 3.4118 -1.2172 0.0714 10 7 4.1011 -0.0849 0.2769 11 6 5.4161 -0.0896 0.3422 12 7 6.1528 -1.1708 0.2165 13 6 5.5979 -2.3695 0.0078 14 6 6.3683 -3.5352 -0.1284 15 6 5.7491 -4.7337 -0.3236 16 6 4.3610 -4.8205 -0.4064 17 35 3.5447 -6.5019 -0.6927 18 6 3.5762 -3.6939 -0.2815 19 6 4.1835 -2.4590 -0.0709 20 1 -0.4849 -0.8367 -0.0751 21 1 5.9194 0.8513 0.5090 22 1 7.4453 -3.4844 -0.0667 23 1 6.3444 -5.6293 -0.4239 24 1 2.5008 -3.7687 -0.3464 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214791.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:05 Heat of formation + Delta-G solvation = 18.545234 kcal Electronic energy + Delta-G solvation = -13432.627152 eV Core-core repulsion = 10969.169276 eV Total energy + Delta-G solvation = -2463.457876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.48717 -38.33215 -36.55992 -34.39919 -32.81286 -31.89460 -30.18682 -28.34186 -24.78377 -24.55116 -22.57995 -20.83124 -19.23274 -18.32725 -17.37398 -16.17839 -15.69967 -15.57130 -15.40390 -14.95612 -14.46245 -14.17523 -13.72880 -13.40493 -13.05254 -12.67968 -12.16173 -12.02239 -11.78004 -11.57548 -11.23869 -11.12125 -10.84980 -10.01702 -9.87332 -9.28514 -9.24882 -7.28391 -0.37849 0.03511 0.68995 0.97200 1.60296 1.69214 1.98984 2.13136 2.42194 2.64357 3.51123 3.59083 3.71591 3.79347 3.88348 4.16482 4.41876 4.56256 4.89467 5.01558 5.04050 5.12678 5.28358 5.34172 5.55971 5.76365 5.99615 6.22498 6.67019 7.56281 7.78998 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.006890 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.846154 B = 4062.735377 C = 5126.451289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.022 3.978 3 Si 1.178 2.822 4 H -0.320 1.320 5 H -0.270 1.270 6 H -0.294 1.294 7 C -0.413 4.413 8 H 0.095 0.905 9 C 0.249 3.751 10 N -0.658 5.658 11 C 0.344 3.656 12 N -0.640 5.640 13 C 0.182 3.818 14 C -0.140 4.140 15 C -0.047 4.047 16 C -0.154 4.154 17 Br -0.048 7.048 18 C -0.025 4.025 19 C -0.227 4.227 20 H 0.297 0.703 21 H 0.198 0.802 22 H 0.152 0.848 23 H 0.161 0.839 24 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 -9.493 -1.248 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.203 4.203 3 Si 1.009 2.991 4 H -0.252 1.252 5 H -0.197 1.197 6 H -0.222 1.222 7 C -0.446 4.446 8 H 0.113 0.887 9 C 0.122 3.878 10 N -0.389 5.389 11 C 0.054 3.946 12 N -0.366 5.366 13 C 0.058 3.942 14 C -0.161 4.161 15 C -0.068 4.068 16 C -0.234 4.234 17 Br 0.036 6.964 18 C -0.047 4.047 19 C -0.234 4.234 20 H 0.109 0.891 21 H 0.214 0.786 22 H 0.169 0.831 23 H 0.179 0.821 24 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.848 -7.847 -1.139 9.294 hybrid contribution -0.524 -2.161 -0.128 2.227 sum 4.324 -10.008 -1.267 10.975 Atomic orbital electron populations 1.70554 1.08364 1.34231 1.25371 1.28758 0.95406 1.07808 0.88368 0.81536 0.70289 0.67531 0.79766 1.25230 1.19727 1.22167 1.21205 0.90754 0.97313 1.35367 0.88723 1.20177 0.93700 0.87053 0.86886 1.67537 1.10082 1.28135 1.33192 1.24608 0.86674 0.97216 0.86104 1.68578 1.39233 0.98429 1.30398 1.19258 0.89701 0.93736 0.91542 1.20741 1.00485 0.89647 1.05204 1.20944 0.91908 0.98648 0.95335 1.21622 0.95454 0.91204 1.15141 1.96563 1.81736 1.22134 1.95924 1.20887 0.99485 0.90280 0.93998 1.20418 0.95688 0.95342 1.11977 0.89100 0.78592 0.83058 0.82131 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.42 13.63 21.91 0.30 -36.12 14 2 C 0.02 1.05 5.52 85.43 0.47 1.52 14 3 Si 1.18 51.59 25.65 68.60 1.76 53.35 14 4 H -0.32 -13.58 7.11 99.48 0.71 -12.87 14 5 H -0.27 -11.84 6.66 99.48 0.66 -11.18 14 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 14 7 C -0.41 -20.18 9.33 23.39 0.22 -19.97 14 8 H 0.09 4.49 6.59 -2.92 -0.02 4.47 14 9 C 0.25 12.25 6.57 41.64 0.27 12.52 14 10 N -0.66 -31.54 4.85 -189.32 -0.92 -32.46 14 11 C 0.34 14.91 12.16 181.03 2.20 17.12 14 12 N -0.64 -28.20 10.39 -194.07 -2.02 -30.21 14 13 C 0.18 7.89 6.63 40.30 0.27 8.16 14 14 C -0.14 -4.89 10.02 22.34 0.22 -4.67 14 15 C -0.05 -1.45 9.68 22.08 0.21 -1.24 14 16 C -0.15 -5.22 6.23 22.44 0.14 -5.08 14 17 Br -0.05 -1.34 33.67 -20.37 -0.69 -2.03 14 18 C -0.03 -1.01 9.24 22.42 0.21 -0.80 14 19 C -0.23 -10.34 5.91 -19.86 -0.12 -10.46 14 20 H 0.30 13.31 8.72 -92.71 -0.81 12.50 14 21 H 0.20 6.88 8.06 -2.91 -0.02 6.86 14 22 H 0.15 4.54 8.06 -2.91 -0.02 4.51 14 23 H 0.16 3.73 8.06 -2.91 -0.02 3.71 14 24 H 0.13 4.95 6.60 -2.91 -0.02 4.93 14 Total: -1.00 -53.52 236.46 3.70 -49.82 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.16 Total: 0.53 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.10 Total: -2.89 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -2.63 Total: -98.79 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.76 Total: 53.35 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -0.69 Total: -2.03 kcal Total: -53.52 3.70 -49.82 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214791.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.367 kcal (2) G-P(sol) polarization free energy of solvation -53.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds