Wall clock time and date at job start Mon Mar 30 2020 07:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99464 * 2 1 4 4 H 1.48500 * 109.47514 * 269.99738 * 3 2 1 5 5 H 1.48504 * 109.47095 * 30.00205 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00006 * 3 2 1 7 7 C 1.37869 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00387 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.47766 * 180.02562 * 9 7 2 11 11 O 1.42105 * 109.46783 * 289.05702 * 10 9 7 12 12 C 1.76193 * 103.00259 * 179.97438 * 10 9 7 13 13 C 1.38245 * 119.99500 * 94.99837 * 12 10 9 14 14 C 1.38194 * 120.02789 * 179.97438 * 13 12 10 15 15 C 1.38377 * 120.01416 * 0.02562 * 14 13 12 16 16 Cl 1.73602 * 120.00940 * 179.97438 * 15 14 13 17 17 C 1.38308 * 119.98740 * 359.97438 * 15 14 13 18 18 C 1.38337 * 119.99438 * 274.72417 * 12 10 9 19 19 Cl 1.73603 * 120.00727 * 0.02562 * 18 12 10 20 20 H 0.96996 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46984 * 59.99900 * 9 7 2 22 22 H 1.09001 * 109.46992 * 300.00470 * 9 7 2 23 23 H 1.08000 * 119.98304 * 0.02562 * 13 12 10 24 24 H 1.08004 * 119.99622 * 180.02562 * 14 13 12 25 25 H 1.08000 * 120.01250 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0017 10 16 2.4301 -3.8779 -0.0014 11 8 3.0713 -3.9530 -1.2673 12 6 1.3828 -5.2948 -0.0021 13 6 1.0565 -5.9124 -1.1951 14 6 0.2356 -7.0241 -1.1963 15 6 -0.2607 -7.5195 -0.0034 16 17 -1.2925 -8.9156 -0.0052 17 6 0.0654 -6.9020 1.1905 18 6 0.8919 -5.7925 1.1917 19 17 1.3070 -5.0207 2.6903 20 1 -0.4850 0.8400 -0.0004 21 1 0.6250 -2.5563 -0.8920 22 1 0.6242 -2.5575 0.8880 23 1 1.4439 -5.5264 -2.1263 24 1 -0.0187 -7.5064 -2.1286 25 1 -0.3220 -7.2881 2.1218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306479739.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:25 Heat of formation + Delta-G solvation = -34.329491 kcal Electronic energy + Delta-G solvation = -14536.682942 eV Core-core repulsion = 11693.387202 eV Total energy + Delta-G solvation = -2843.295740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25586 -36.82804 -36.31356 -34.87031 -33.17679 -31.02616 -30.68544 -28.65174 -23.46373 -22.95601 -22.71740 -18.21169 -16.89642 -16.53404 -15.92330 -15.48255 -14.85321 -14.53457 -14.10063 -13.91560 -13.39997 -12.79938 -12.56342 -12.34944 -12.12994 -11.95681 -11.30452 -11.17582 -11.08796 -11.02526 -10.97389 -10.73365 -10.40332 -9.65913 -9.30692 -9.05010 -8.82858 -8.60286 -7.44533 -6.21503 -4.29692 0.73803 1.07888 1.72344 2.15048 2.55264 3.24153 3.27977 3.30564 3.33928 3.77463 4.30867 4.52531 4.73178 4.89927 5.15094 5.24205 5.36812 5.65998 5.72707 5.99794 6.13863 6.53203 6.97987 7.08817 7.61410 7.94367 8.73493 9.35562 10.90047 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.004985 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.297458 B = 5615.018871 C = 5770.021014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.065 0.935 9 C -0.249 4.249 10 S 1.277 4.723 11 O -0.865 6.865 12 C -0.433 4.433 13 C -0.034 4.034 14 C -0.123 4.123 15 C -0.006 4.006 16 Cl -0.065 7.065 17 C -0.120 4.120 18 C 0.041 3.959 19 Cl -0.041 7.041 20 H 0.265 0.735 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.146 0.854 24 H 0.138 0.862 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -14.277 5.160 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.083 0.917 9 C -0.390 4.390 10 S 1.477 4.523 11 O -0.861 6.861 12 C -0.527 4.527 13 C -0.053 4.053 14 C -0.142 4.142 15 C -0.033 4.033 16 Cl -0.036 7.036 17 C -0.140 4.140 18 C 0.013 3.987 19 Cl -0.012 7.012 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.163 0.837 24 H 0.156 0.844 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.461 -14.279 5.282 15.232 hybrid contribution -1.367 0.685 -1.671 2.265 sum -0.905 -13.594 3.610 14.095 Atomic orbital electron populations 1.69969 1.06223 1.27252 1.48580 1.24961 0.94927 0.99363 0.94167 0.86457 0.79948 0.82450 0.78491 1.20383 1.20830 1.19200 1.20392 0.92705 0.88858 1.53881 0.91712 1.24922 1.05895 1.04700 1.03462 1.69435 0.89590 0.83792 1.09526 1.92979 1.64351 1.83703 1.45086 1.28477 1.12065 1.17543 0.94582 1.21113 0.93144 0.92989 0.98081 1.21220 0.98608 0.97357 0.97062 1.20823 0.96480 0.91182 0.94790 1.98371 1.66094 1.40256 1.98923 1.20918 0.99387 0.95779 0.97905 1.20275 0.97188 0.93955 0.87297 1.98408 1.91980 1.79988 1.30823 0.92513 0.93817 0.90628 0.83665 0.84448 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.29 55.43 0.74 -24.68 15 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 15 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.52 -14.04 9.13 -34.44 -0.31 -14.36 15 8 H 0.06 1.68 7.71 -52.49 -0.40 1.28 15 9 C -0.25 -6.10 5.64 36.01 0.20 -5.89 15 10 S 1.28 25.24 12.36 -107.50 -1.33 23.91 15 11 O -0.87 -21.02 16.78 -35.23 -0.59 -21.61 15 12 C -0.43 -7.48 5.63 -39.54 -0.22 -7.70 15 13 C -0.03 -0.57 9.45 -39.59 -0.37 -0.94 15 14 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 15 15 C -0.01 -0.07 6.32 -39.50 -0.25 -0.32 15 16 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.23 15 17 C -0.12 -1.57 9.62 -39.51 -0.38 -1.95 15 18 C 0.04 0.61 6.32 -39.50 -0.25 0.36 15 19 Cl -0.04 -0.56 27.80 -51.86 -1.44 -2.00 15 20 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.04 1.18 8.14 -51.92 -0.42 0.76 15 22 H 0.08 1.81 8.14 -51.92 -0.42 1.39 15 23 H 0.15 2.55 7.34 -52.49 -0.39 2.17 15 24 H 0.14 1.57 8.06 -52.48 -0.42 1.15 15 25 H 0.15 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 273.20 15.07 4.12 4.12 Total: -1.00 -31.93 273.20 -8.72 -40.65 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -1.62 Total: -2.93 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -2.07 Total: -31.05 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.74 Total: -24.68 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.59 Total: -21.61 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 25.24 SS G_CDS: -1.33 Total: 23.91 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.94 Total: -4.23 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.93 -8.72 -40.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306479739.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.324 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds