Wall clock time and date at job start Mon Mar 30 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48493 * 109.47097 * 269.99644 * 3 2 1 5 5 H 1.48499 * 109.47037 * 29.99864 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99464 * 3 2 1 7 7 C 1.37876 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99592 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00276 * 180.02562 * 7 2 1 10 10 S 1.81404 * 109.47081 * 180.02562 * 9 7 2 11 11 O 1.42094 * 109.47141 * 289.05206 * 10 9 7 12 12 C 1.76199 * 102.99907 * 179.97438 * 10 9 7 13 13 C 1.38227 * 119.98602 * 269.72537 * 12 10 9 14 14 C 1.38360 * 120.00893 * 179.72356 * 13 12 10 15 15 Cl 1.73606 * 120.00642 * 180.27040 * 14 13 12 16 16 C 1.38335 * 119.98942 * 0.53034 * 14 13 12 17 17 C 1.38330 * 119.97005 * 359.74677 * 16 14 13 18 18 Cl 1.73606 * 120.00328 * 180.02562 * 17 16 14 19 19 C 1.38219 * 119.98950 * 89.99853 * 12 10 9 20 20 H 0.97004 * 119.99998 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47480 * 60.00152 * 9 7 2 22 22 H 1.09005 * 109.47237 * 299.99925 * 9 7 2 23 23 H 1.07993 * 119.99040 * 0.02562 * 13 12 10 24 24 H 1.08002 * 120.01132 * 179.72091 * 16 14 13 25 25 H 1.08005 * 119.99425 * 0.02562 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8612 -3.4970 1.2670 12 6 5.8669 -2.7058 0.0009 13 6 6.5539 -2.6336 -1.1963 14 6 7.9281 -2.4719 -1.1970 15 17 8.7901 -2.3741 -2.7007 16 6 8.6156 -2.3936 0.0009 17 6 7.9281 -2.4717 1.1987 18 17 8.7900 -2.3728 2.7024 19 6 6.5534 -2.6280 1.1980 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8889 23 1 6.0174 -2.6984 -2.1313 24 1 9.6887 -2.2719 0.0008 25 1 6.0166 -2.6894 2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307394272.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:27 Heat of formation + Delta-G solvation = -32.242764 kcal Electronic energy + Delta-G solvation = -14432.721645 eV Core-core repulsion = 11589.516393 eV Total energy + Delta-G solvation = -2843.205252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.38188 -36.89810 -36.39475 -35.07459 -33.10785 -31.23062 -30.74130 -29.46288 -23.46490 -22.91545 -22.52375 -18.39217 -17.06761 -16.67964 -16.00708 -15.67626 -14.78369 -14.57847 -14.49018 -14.07294 -13.58853 -13.12509 -12.52611 -12.49679 -12.33594 -11.96401 -11.60306 -11.40868 -11.28841 -11.12820 -11.02269 -10.72246 -10.18807 -9.72255 -9.51146 -9.23181 -8.85542 -8.76104 -7.69962 -6.25364 -4.30429 0.69105 0.87713 1.64380 2.09698 2.34349 3.12373 3.17800 3.27333 3.29796 3.59342 4.28081 4.46541 4.67705 4.82650 4.99036 5.08081 5.17803 5.30584 5.80012 5.87178 6.04196 6.35215 6.53458 6.55917 7.38733 8.12350 8.70185 9.33000 10.85921 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.005630 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.563813 B = 4972.318068 C = 5453.895268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.084 3.916 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.082 0.918 9 C -0.306 4.306 10 S 1.317 4.683 11 O -0.854 6.854 12 C -0.428 4.428 13 C -0.034 4.034 14 C -0.042 4.042 15 Cl -0.061 7.061 16 C -0.083 4.083 17 C -0.040 4.040 18 Cl -0.064 7.064 19 C -0.043 4.043 20 H 0.269 0.731 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.154 0.846 24 H 0.142 0.858 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.410 -4.633 -5.165 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.121 4.121 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.100 0.900 9 C -0.446 4.446 10 S 1.515 4.485 11 O -0.850 6.850 12 C -0.520 4.520 13 C -0.054 4.054 14 C -0.070 4.070 15 Cl -0.032 7.032 16 C -0.103 4.103 17 C -0.068 4.068 18 Cl -0.035 7.035 19 C -0.063 4.063 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.172 0.828 24 H 0.160 0.840 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.948 -5.376 -5.136 18.507 hybrid contribution 1.460 2.286 1.847 3.281 sum 18.408 -3.090 -3.289 18.954 Atomic orbital electron populations 1.69872 1.06258 1.27503 1.48879 1.24915 0.94645 0.99073 0.93516 0.86758 0.80365 0.83344 0.78881 1.19598 1.21026 1.19209 1.20195 0.86137 0.95434 1.53998 0.90038 1.25476 1.04880 1.11779 1.02431 1.69366 0.77716 0.91841 1.09609 1.93034 1.78241 1.68903 1.44838 1.28780 1.22532 1.05844 0.94884 1.20915 0.91466 0.94516 0.98499 1.20864 0.92894 1.06217 0.86981 1.98378 1.76874 1.96744 1.31235 1.20935 1.00687 0.99220 0.89439 1.20903 0.92724 1.06029 0.87105 1.98375 1.76798 1.96705 1.31628 1.21257 0.91907 0.93524 0.99617 0.92146 0.93721 0.91284 0.82825 0.83978 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.29 15 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 15 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.52 -13.83 9.68 -34.44 -0.33 -14.17 15 8 H 0.08 2.30 7.96 -52.48 -0.42 1.88 15 9 C -0.31 -6.62 4.71 36.00 0.17 -6.45 15 10 S 1.32 22.86 13.46 -107.50 -1.45 21.41 15 11 O -0.85 -19.59 16.90 -35.23 -0.60 -20.18 15 12 C -0.43 -6.46 5.61 -39.59 -0.22 -6.69 15 13 C -0.03 -0.42 9.54 -39.54 -0.38 -0.80 15 14 C -0.04 -0.50 6.32 -39.50 -0.25 -0.74 15 15 Cl -0.06 -0.62 28.96 -51.86 -1.50 -2.13 15 16 C -0.08 -1.01 9.62 -39.51 -0.38 -1.39 15 17 C -0.04 -0.55 6.32 -39.50 -0.25 -0.80 15 18 Cl -0.06 -0.82 28.96 -51.86 -1.50 -2.32 15 19 C -0.04 -0.70 9.23 -39.55 -0.36 -1.06 15 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.04 1.04 7.20 -51.93 -0.37 0.66 15 22 H 0.07 1.32 7.57 -51.92 -0.39 0.93 15 23 H 0.15 1.36 8.06 -52.49 -0.42 0.93 15 24 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 25 H 0.14 2.53 7.45 -52.48 -0.39 2.14 15 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -32.95 271.55 -8.54 -41.49 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -1.59 Total: -3.27 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -2.10 Total: -29.87 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.29 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.60 Total: -20.18 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 22.86 SS G_CDS: -1.45 Total: 21.41 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -3.00 Total: -4.45 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.95 -8.54 -41.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307394272.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.248 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds