Wall clock time and date at job start Mon Mar 30 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48493 * 109.47097 * 269.99644 * 3 2 1 5 5 H 1.48499 * 109.47037 * 29.99864 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99464 * 3 2 1 7 7 C 1.37876 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99592 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00276 * 180.02562 * 7 2 1 10 10 S 1.81404 * 109.47081 * 180.02562 * 9 7 2 11 11 O 1.42094 * 109.47141 * 289.05206 * 10 9 7 12 12 C 1.76199 * 102.99907 * 179.97438 * 10 9 7 13 13 C 1.38227 * 119.98602 * 269.72537 * 12 10 9 14 14 C 1.38360 * 120.00893 * 179.72356 * 13 12 10 15 15 Cl 1.73606 * 120.00642 * 180.27040 * 14 13 12 16 16 C 1.38335 * 119.98942 * 0.53034 * 14 13 12 17 17 C 1.38330 * 119.97005 * 359.74677 * 16 14 13 18 18 Cl 1.73606 * 120.00328 * 180.02562 * 17 16 14 19 19 C 1.38219 * 119.98950 * 89.99853 * 12 10 9 20 20 H 0.97004 * 119.99998 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47480 * 60.00152 * 9 7 2 22 22 H 1.09005 * 109.47237 * 299.99925 * 9 7 2 23 23 H 1.07993 * 119.99040 * 0.02562 * 13 12 10 24 24 H 1.08002 * 120.01132 * 179.72091 * 16 14 13 25 25 H 1.08005 * 119.99425 * 0.02562 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8612 -3.4970 1.2670 12 6 5.8669 -2.7058 0.0009 13 6 6.5539 -2.6336 -1.1963 14 6 7.9281 -2.4719 -1.1970 15 17 8.7901 -2.3741 -2.7007 16 6 8.6156 -2.3936 0.0009 17 6 7.9281 -2.4717 1.1987 18 17 8.7900 -2.3728 2.7024 19 6 6.5534 -2.6280 1.1980 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8889 23 1 6.0174 -2.6984 -2.1313 24 1 9.6887 -2.2719 0.0008 25 1 6.0166 -2.6894 2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307394272.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:27 Heat of formation + Delta-G solvation = -54.140991 kcal Electronic energy + Delta-G solvation = -14433.671224 eV Core-core repulsion = 11589.516393 eV Total energy + Delta-G solvation = -2844.154831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43192 -37.85558 -37.36175 -36.75525 -35.14627 -32.31514 -31.79593 -31.37967 -24.94071 -24.11568 -23.96922 -19.65622 -18.99159 -17.98945 -17.08917 -16.84186 -16.60946 -15.91292 -15.56918 -15.40132 -14.98999 -14.78802 -14.45633 -13.52183 -13.43328 -13.26122 -13.06350 -12.91523 -12.53201 -12.34686 -12.24147 -12.03508 -12.01768 -11.72071 -11.09244 -10.83036 -10.33865 -9.87790 -9.25831 -8.34969 -6.44273 -0.42012 -0.17459 0.64055 0.95618 1.14288 1.33269 1.37261 1.46437 1.89850 2.29418 2.32245 2.92579 3.08336 3.71161 3.79908 3.97206 4.11935 4.19843 4.71490 4.77100 4.84172 4.85774 4.95775 5.29631 5.45650 6.00578 6.61922 7.22399 8.79789 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.005630 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.563813 B = 4972.318068 C = 5453.895268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.244 1.244 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.049 0.951 9 C -0.324 4.324 10 S 1.389 4.611 11 O -0.916 6.916 12 C -0.441 4.441 13 C -0.022 4.022 14 C -0.041 4.041 15 Cl -0.037 7.037 16 C -0.070 4.070 17 C -0.047 4.047 18 Cl -0.058 7.058 19 C -0.066 4.066 20 H 0.271 0.729 21 H 0.027 0.973 22 H 0.103 0.897 23 H 0.192 0.808 24 H 0.168 0.832 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.459 -3.957 -7.095 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.178 4.178 3 Si 0.766 3.234 4 H -0.168 1.168 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.067 0.933 9 C -0.462 4.462 10 S 1.589 4.411 11 O -0.912 6.912 12 C -0.537 4.537 13 C -0.041 4.041 14 C -0.069 4.069 15 Cl -0.008 7.008 16 C -0.089 4.089 17 C -0.076 4.076 18 Cl -0.029 7.029 19 C -0.086 4.086 20 H 0.080 0.920 21 H 0.045 0.955 22 H 0.121 0.879 23 H 0.209 0.791 24 H 0.186 0.814 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.970 -4.699 -7.074 21.701 hybrid contribution 0.687 1.964 2.407 3.181 sum 20.657 -2.735 -4.667 21.354 Atomic orbital electron populations 1.70018 1.08151 1.28562 1.51034 1.25877 0.95446 1.03153 0.93363 0.85752 0.78892 0.78463 0.80263 1.16763 1.21438 1.18568 1.20530 0.89012 0.94231 1.52711 0.93323 1.25614 1.01782 1.15864 1.02918 1.68585 0.78177 0.87548 1.06823 1.92917 1.81033 1.69830 1.47448 1.28191 1.20518 1.08939 0.96068 1.21297 0.91980 0.92169 0.98646 1.20940 0.92919 1.05147 0.87896 1.98399 1.76272 1.96536 1.29574 1.21251 1.01928 0.96992 0.88705 1.20903 0.92041 1.06426 0.88185 1.98376 1.76370 1.96692 1.31492 1.21162 0.93149 0.95308 0.98981 0.92031 0.95485 0.87928 0.79077 0.81430 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 15 2 C 0.02 1.22 5.47 84.65 0.46 1.68 15 3 Si 0.94 42.37 27.47 68.60 1.88 44.25 15 4 H -0.24 -9.86 7.11 99.48 0.71 -9.15 15 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.26 -11.37 6.54 99.48 0.65 -10.72 15 7 C -0.53 -28.66 9.68 25.60 0.25 -28.42 15 8 H 0.05 2.88 7.96 -2.91 -0.02 2.86 15 9 C -0.32 -13.84 4.71 71.23 0.34 -13.50 15 10 S 1.39 47.80 13.46 -56.49 -0.76 47.04 15 11 O -0.92 -43.26 16.90 -148.98 -2.52 -45.77 15 12 C -0.44 -12.57 5.61 22.26 0.12 -12.44 15 13 C -0.02 -0.44 9.54 22.30 0.21 -0.23 15 14 C -0.04 -0.80 6.32 22.32 0.14 -0.66 15 15 Cl -0.04 -0.59 28.96 -2.72 -0.08 -0.67 15 16 C -0.07 -1.44 9.62 22.31 0.21 -1.22 15 17 C -0.05 -1.23 6.32 22.32 0.14 -1.09 15 18 Cl -0.06 -1.41 28.96 -2.72 -0.08 -1.49 15 19 C -0.07 -2.08 9.23 22.29 0.21 -1.87 15 20 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 21 H 0.03 1.24 7.20 -2.39 -0.02 1.22 15 22 H 0.10 3.67 7.57 -2.39 -0.02 3.65 15 23 H 0.19 2.42 8.06 -2.91 -0.02 2.39 15 24 H 0.17 2.59 8.06 -2.91 -0.02 2.57 15 25 H 0.12 4.27 7.45 -2.91 -0.02 4.25 15 Total: -1.00 -73.64 271.55 2.00 -71.64 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: 1.17 Total: -0.83 kcal Atomic # 6 Polarization: -59.85 SS G_CDS: 2.09 Total: -57.77 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -2.52 Total: -45.77 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.25 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.76 Total: 47.04 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.16 Total: -2.16 kcal Total: -73.64 2.00 -71.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307394272.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.496 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds