Wall clock time and date at job start Mon Mar 30 2020 07:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48505 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46868 * 299.99582 * 3 2 1 6 6 H 1.48498 * 109.47400 * 59.99832 * 3 2 1 7 7 C 1.37883 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99467 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.46960 * 179.97438 * 9 7 2 11 11 O 1.42105 * 109.47009 * 70.94765 * 10 9 7 12 12 C 1.76197 * 102.99885 * 180.02562 * 10 9 7 13 13 C 1.38224 * 119.98889 * 269.72739 * 12 10 9 14 14 C 1.38353 * 120.01549 * 179.72960 * 13 12 10 15 15 Cl 1.73599 * 120.00848 * 180.27080 * 14 13 12 16 16 C 1.38334 * 119.98502 * 0.56907 * 14 13 12 17 17 C 1.38328 * 119.97555 * 359.70028 * 16 14 13 18 18 Cl 1.73596 * 120.00775 * 180.02562 * 17 16 14 19 19 C 1.38217 * 119.98714 * 90.00395 * 12 10 9 20 20 H 0.96996 * 119.99683 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46866 * 60.00252 * 9 7 2 22 22 H 1.08997 * 109.47255 * 300.00440 * 9 7 2 23 23 H 1.08004 * 119.98785 * 359.97438 * 13 12 10 24 24 H 1.08005 * 120.01406 * 179.68697 * 16 14 13 25 25 H 1.08002 * 119.99437 * 359.97438 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.0700 -3.9538 1.2669 12 6 1.3824 -5.2948 -0.0002 13 6 0.9759 -5.8541 1.1966 14 6 0.1489 -6.9633 1.1967 15 17 -0.3672 -7.6614 2.7000 16 6 -0.2616 -7.5197 -0.0014 17 6 0.1500 -6.9630 -1.1989 18 17 -0.3651 -7.6601 -2.7030 19 6 0.9722 -5.8500 -1.1977 20 1 -0.4849 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 1.3007 -5.4227 2.1320 24 1 -0.9030 -8.3887 -0.0019 25 1 1.2934 -5.4151 -2.1326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307394273.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:29 Heat of formation + Delta-G solvation = -36.133631 kcal Electronic energy + Delta-G solvation = -14367.080971 eV Core-core repulsion = 11523.706998 eV Total energy + Delta-G solvation = -2843.373973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27335 -36.80617 -36.30116 -34.92420 -33.20230 -31.11753 -30.63312 -28.68027 -23.55526 -22.84132 -22.80885 -18.30764 -16.61591 -16.55256 -15.89763 -15.60349 -14.89060 -14.43921 -14.34815 -14.08033 -13.42530 -12.76564 -12.44011 -12.40513 -12.13993 -11.83833 -11.44296 -11.26642 -11.17232 -11.03808 -10.97852 -10.77291 -10.41338 -9.66670 -9.36064 -9.09311 -8.74931 -8.63681 -7.52309 -6.24391 -4.32771 0.81220 0.98782 1.73766 2.19454 2.48285 3.20994 3.25180 3.29305 3.33880 3.74062 4.28865 4.61237 4.77647 4.93301 5.09914 5.13258 5.28892 5.41650 5.90529 5.97728 6.16229 6.46267 6.94710 7.05480 7.58945 7.91648 8.71245 9.33082 10.87121 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.005030 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.187383 B = 5565.291121 C = 6236.198576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.066 0.934 9 C -0.254 4.254 10 S 1.284 4.716 11 O -0.863 6.863 12 C -0.419 4.419 13 C -0.043 4.043 14 C -0.039 4.039 15 Cl -0.066 7.066 16 C -0.085 4.085 17 C -0.041 4.041 18 Cl -0.063 7.063 19 C -0.035 4.035 20 H 0.265 0.735 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.143 0.857 24 H 0.142 0.858 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -14.292 -5.214 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.084 0.916 9 C -0.395 4.395 10 S 1.483 4.517 11 O -0.859 6.859 12 C -0.511 4.511 13 C -0.063 4.063 14 C -0.067 4.067 15 Cl -0.037 7.037 16 C -0.105 4.105 17 C -0.069 4.069 18 Cl -0.034 7.034 19 C -0.055 4.055 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.538 -14.369 -5.186 15.286 hybrid contribution -1.446 0.618 1.852 2.429 sum -0.908 -13.751 -3.334 14.179 Atomic orbital electron populations 1.69978 1.06250 1.27193 1.48588 1.24981 0.94927 0.99449 0.94149 0.86392 0.80251 0.82762 0.77882 1.19201 1.20500 1.20774 1.20448 0.92758 0.88902 1.53849 0.91616 1.24979 1.06047 1.05032 1.03436 1.69130 0.89186 0.83442 1.09985 1.93021 1.64397 1.83658 1.44794 1.28668 1.11287 1.16366 0.94806 1.21226 0.92697 0.92758 0.99607 1.20883 1.01347 0.97438 0.87013 1.98369 1.89795 1.83728 1.31776 1.20908 0.99869 1.00240 0.89447 1.20843 1.01536 0.97607 0.86885 1.98372 1.89863 1.83840 1.31325 1.20894 0.93597 0.92491 0.98473 0.92548 0.90823 0.93772 0.83919 0.84057 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.39 15 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 15 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -13.71 9.13 -34.44 -0.31 -14.03 15 8 H 0.07 1.66 7.71 -52.49 -0.40 1.26 15 9 C -0.25 -5.96 5.64 36.01 0.20 -5.76 15 10 S 1.28 23.29 13.46 -107.50 -1.45 21.84 15 11 O -0.86 -20.29 16.89 -35.23 -0.60 -20.88 15 12 C -0.42 -6.78 5.61 -39.59 -0.22 -7.00 15 13 C -0.04 -0.74 9.23 -39.54 -0.36 -1.11 15 14 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 15 15 Cl -0.07 -0.89 28.96 -51.86 -1.50 -2.39 15 16 C -0.09 -1.11 9.61 -39.51 -0.38 -1.49 15 17 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 15 18 Cl -0.06 -0.69 28.96 -51.86 -1.50 -2.19 15 19 C -0.03 -0.46 9.54 -39.54 -0.38 -0.84 15 20 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 21 H 0.07 1.67 8.14 -51.92 -0.42 1.25 15 22 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15 23 H 0.14 2.68 7.45 -52.48 -0.39 2.28 15 24 H 0.14 1.52 8.06 -52.48 -0.42 1.10 15 25 H 0.15 1.52 8.06 -52.49 -0.42 1.10 15 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -32.45 275.14 -8.86 -41.31 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -1.62 Total: -2.97 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -2.05 Total: -30.02 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.74 Total: -24.39 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.60 Total: -20.88 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 23.29 SS G_CDS: -1.45 Total: 21.84 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -3.00 Total: -4.58 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.45 -8.86 -41.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307394273.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.178 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds