Wall clock time and date at job start Mon Mar 30 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29440 * 117.95980 * 2 1 4 4 C 1.50077 * 124.07407 * 179.55446 * 3 2 1 5 5 H 1.08999 * 109.35528 * 256.92745 * 4 3 2 6 6 C 1.52992 * 109.35606 * 137.34422 * 4 3 2 7 7 C 1.53021 * 110.14625 * 17.13468 * 4 3 2 8 8 C 1.53391 * 108.43906 * 310.56387 * 7 4 3 9 9 H 1.09000 * 109.64663 * 307.53664 * 8 7 4 10 10 C 1.53004 * 109.64141 * 187.11887 * 8 7 4 11 11 N 1.46901 * 109.47133 * 177.12481 * 10 8 7 12 12 C 1.46901 * 110.99855 * 288.03415 * 11 10 8 13 13 C 1.50705 * 109.47244 * 169.99727 * 12 11 10 14 14 H 1.08003 * 119.99495 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00166 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99778 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47265 * 89.99950 * 17 15 13 19 19 H 1.48496 * 109.47105 * 209.99936 * 17 15 13 20 20 H 1.48506 * 109.47224 * 329.99852 * 17 15 13 21 21 C 1.46901 * 111.00275 * 164.07763 * 11 10 8 22 22 C 1.52990 * 109.47281 * 288.22233 * 21 11 10 23 23 C 1.53000 * 117.49807 * 185.29014 * 22 21 11 24 24 C 1.53000 * 117.50092 * 116.66582 * 22 21 11 25 25 C 1.50069 * 117.96215 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47661 * 5.11339 * 1 2 3 27 27 H 1.09000 * 109.47443 * 125.11585 * 1 2 3 28 28 H 1.09001 * 109.47025 * 245.11360 * 1 2 3 29 29 H 1.08000 * 117.96493 * 359.58756 * 3 2 1 30 30 H 1.09005 * 109.47382 * 299.30865 * 6 4 3 31 31 H 1.09003 * 109.47637 * 59.31039 * 6 4 3 32 32 H 1.08998 * 109.47390 * 179.31217 * 6 4 3 33 33 H 1.08994 * 109.64218 * 190.87960 * 7 4 3 34 34 H 1.09003 * 109.81420 * 70.35157 * 7 4 3 35 35 H 1.08995 * 109.47227 * 57.12602 * 10 8 7 36 36 H 1.08997 * 109.46913 * 297.12039 * 10 8 7 37 37 H 1.08994 * 109.47365 * 290.00029 * 12 11 10 38 38 H 1.09000 * 109.47277 * 50.00366 * 12 11 10 39 39 H 0.96996 * 119.99980 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46831 * 168.21828 * 21 11 10 41 41 H 1.09000 * 109.46557 * 48.22132 * 21 11 10 42 42 H 1.09003 * 115.56670 * 330.97967 * 22 21 11 43 43 H 1.09004 * 117.49808 * 145.02361 * 23 22 21 44 44 H 1.08995 * 117.49834 * 359.97438 * 23 22 21 45 45 H 1.09005 * 117.49668 * 0.02562 * 24 22 21 46 46 H 1.08998 * 117.52323 * 214.97006 * 24 22 21 47 47 H 1.08990 * 109.36049 * 76.89735 * 25 2 1 48 48 H 1.08998 * 109.35373 * 317.30957 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1433 0.0000 4 6 3.6060 1.3032 0.0097 5 1 3.9336 1.5766 1.0127 6 6 4.0039 2.4091 -0.9697 7 6 4.2792 -0.0072 -0.4042 8 6 3.6705 -1.1473 0.4220 9 1 3.7206 -0.8989 1.4821 10 6 4.4434 -2.4416 0.1601 11 7 3.9016 -3.5148 1.0043 12 6 4.2700 -3.3140 2.4121 13 6 3.5026 -4.2822 3.2752 14 1 2.8108 -4.9774 2.8231 15 6 3.6846 -4.2810 4.6419 16 7 3.0153 -5.1263 5.3951 17 14 4.8816 -3.0790 5.4238 18 1 4.1682 -1.8227 5.7674 19 1 5.4503 -3.6786 6.6575 20 1 5.9781 -2.7799 4.4679 21 6 4.3420 -4.8327 0.5277 22 6 3.6205 -5.1699 -0.7786 23 6 3.8503 -6.5605 -1.3739 24 6 4.4760 -5.3317 -2.0368 25 6 2.2106 -1.3255 -0.0006 26 1 -0.3634 1.0236 -0.0916 27 1 -0.3634 -0.5911 -0.8406 28 1 -0.3633 -0.4325 0.9323 29 1 1.5088 2.0379 -0.0069 30 1 3.6834 2.1366 -1.9753 31 1 3.5253 3.3436 -0.6766 32 1 5.0864 2.5352 -0.9552 33 1 5.3501 0.0540 -0.2109 34 1 4.1082 -0.1915 -1.4648 35 1 5.4965 -2.2901 0.3964 36 1 4.3426 -2.7189 -0.8892 37 1 5.3392 -3.4855 2.5359 38 1 4.0289 -2.2932 2.7087 39 1 3.1431 -5.1252 6.3566 40 1 4.1068 -5.5876 1.2780 41 1 5.4180 -4.8154 0.3545 42 1 2.6305 -4.7293 -0.8965 43 1 3.0114 -7.0348 -1.8834 44 1 4.5157 -7.2349 -0.8351 45 1 5.5529 -5.1982 -1.9337 46 1 4.0491 -4.9977 -2.9825 47 1 2.1741 -1.7535 -1.0023 48 1 1.7123 -1.9993 0.6964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356199573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:08 Heat of formation + Delta-G solvation = 2.799858 kcal Electronic energy + Delta-G solvation = -22564.636824 eV Core-core repulsion = 19618.806083 eV Total energy + Delta-G solvation = -2945.830742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41564 -38.96657 -36.98720 -34.74117 -34.31013 -33.20868 -30.02024 -28.10021 -27.44970 -27.32134 -25.35617 -23.24354 -22.84793 -22.02060 -21.33922 -20.72972 -19.11144 -18.48150 -16.92755 -16.57388 -16.42410 -15.83469 -15.56206 -15.40460 -15.16907 -14.72680 -14.52077 -14.37874 -14.27728 -13.85448 -13.61010 -13.24651 -13.20411 -13.11715 -12.95502 -12.72639 -12.51766 -12.37615 -12.30674 -12.25425 -12.04169 -11.97884 -11.84415 -11.50376 -11.40310 -11.17891 -11.01149 -10.91377 -10.77460 -10.60922 -9.53954 -8.95405 -8.28192 -6.29762 1.31584 1.32031 1.42611 1.45109 2.32530 2.95249 3.04553 3.20473 3.76480 3.81734 3.92420 4.08141 4.13203 4.17564 4.25604 4.33604 4.44348 4.46482 4.50205 4.65663 4.69636 4.71523 4.79357 4.80055 4.81211 4.85890 4.90155 4.93715 4.96186 5.01470 5.03277 5.06443 5.08221 5.14846 5.20614 5.25437 5.31144 5.32993 5.40035 5.42532 5.49631 5.56070 5.61654 5.89683 6.04382 6.23293 6.45060 6.70949 6.76876 7.33345 8.88420 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.006518 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.587360 B = 4295.061686 C = 5740.449620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.134 4.134 3 C -0.162 4.162 4 C -0.062 4.062 5 H 0.067 0.933 6 C -0.134 4.134 7 C -0.101 4.101 8 C -0.079 4.079 9 H 0.045 0.955 10 C 0.064 3.936 11 N -0.531 5.531 12 C 0.174 3.826 13 C -0.508 4.508 14 H 0.040 0.960 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.939 3.061 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.254 1.254 21 C 0.096 3.904 22 C -0.152 4.152 23 C -0.179 4.179 24 C -0.165 4.165 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.086 0.914 37 H -0.021 1.021 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.052 0.948 41 H 0.024 0.976 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 11.528 -16.716 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.134 4.134 3 C -0.180 4.180 4 C -0.080 4.080 5 H 0.085 0.915 6 C -0.191 4.191 7 C -0.138 4.138 8 C -0.098 4.098 9 H 0.063 0.937 10 C -0.063 4.063 11 N -0.254 5.254 12 C 0.047 3.953 13 C -0.547 4.547 14 H 0.058 0.942 15 C -0.187 4.187 16 N -0.588 5.588 17 Si 0.763 3.237 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.178 1.178 21 C -0.032 4.032 22 C -0.171 4.171 23 C -0.217 4.217 24 C -0.202 4.202 25 C -0.096 4.096 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.104 0.896 37 H -0.003 1.003 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.127 0.873 47 H 0.091 0.909 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.787 11.493 -16.574 20.248 hybrid contribution 0.994 -0.135 1.305 1.646 sum 2.781 11.358 -15.269 19.232 Atomic orbital electron populations 1.20949 0.92042 1.02673 1.01875 1.21157 0.96445 0.95177 1.00631 1.22055 0.96078 0.96926 1.02950 1.20015 0.92486 0.95799 0.99745 0.91497 1.21722 1.01493 0.97232 0.98647 1.21643 0.99305 0.93067 0.99830 1.21152 0.95357 0.94257 0.99063 0.93655 1.22178 0.95127 0.91187 0.97844 1.61779 1.59780 1.01732 1.02102 1.19902 0.92674 0.96070 0.86659 1.21250 1.23633 1.18259 0.91525 0.94217 1.25762 0.97683 0.97425 0.97827 1.70041 1.44015 1.39079 1.05650 0.85836 0.80058 0.79486 0.78331 1.19211 1.20614 1.17813 1.21472 0.95132 0.91432 0.95122 1.22160 1.00636 1.00986 0.93273 1.22996 1.03790 0.90902 1.03972 1.23090 0.99041 1.01668 0.96401 1.20126 0.94168 0.94182 1.01099 0.90992 0.91316 0.92751 0.87081 0.92332 0.92042 0.91945 0.91503 0.90809 0.96077 0.89563 1.00341 0.95548 0.92538 0.92941 0.95759 0.88142 0.87661 0.89391 0.88885 0.87279 0.90860 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.98 71.23 0.71 -2.07 16 2 C -0.13 -3.59 5.84 -15.09 -0.09 -3.68 16 3 C -0.16 -3.88 8.64 27.04 0.23 -3.64 16 4 C -0.06 -1.39 2.97 -11.73 -0.03 -1.42 16 5 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 6 C -0.13 -2.24 9.14 71.98 0.66 -1.59 16 7 C -0.10 -2.39 4.60 30.73 0.14 -2.25 16 8 C -0.08 -2.45 2.24 -10.65 -0.02 -2.48 16 9 H 0.04 1.66 6.49 -2.39 -0.02 1.65 16 10 C 0.06 2.11 4.22 86.30 0.36 2.48 16 11 N -0.53 -21.80 4.03 -900.81 -3.63 -25.43 16 12 C 0.17 8.52 3.64 85.56 0.31 8.83 16 13 C -0.51 -29.80 8.84 25.60 0.23 -29.58 16 14 H 0.04 2.60 7.50 -2.91 -0.02 2.57 16 15 C 0.01 0.61 5.47 84.66 0.46 1.07 16 16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 17 Si 0.94 45.14 27.47 68.60 1.88 47.03 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 21 C 0.10 3.74 5.09 86.30 0.44 4.18 16 22 C -0.15 -4.69 4.95 -10.80 -0.05 -4.74 16 23 C -0.18 -4.64 10.25 30.60 0.31 -4.33 16 24 C -0.17 -3.87 10.08 30.60 0.31 -3.56 16 25 C -0.06 -1.80 4.89 29.66 0.15 -1.65 16 26 H 0.07 1.40 7.57 -2.38 -0.02 1.38 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 2.31 7.57 -2.91 -0.02 2.29 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 35 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 36 H 0.09 2.49 7.07 -2.39 -0.02 2.47 16 37 H -0.02 -1.05 7.18 -2.39 -0.02 -1.06 16 38 H 0.03 1.30 5.79 -2.39 -0.01 1.29 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.05 2.44 6.59 -2.39 -0.02 2.42 16 41 H 0.02 0.90 7.79 -2.39 -0.02 0.88 16 42 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.09 2.11 8.03 -2.38 -0.02 2.09 16 46 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 48 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -65.19 368.75 3.49 -61.69 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.82 Total: 20.80 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 4.11 Total: -44.43 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.33 Total: -85.09 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -65.19 3.49 -61.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.493 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds