Wall clock time and date at job start Mon Mar 30 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29445 * 117.96200 * 2 1 4 4 C 1.50069 * 124.07527 * 179.55164 * 3 2 1 5 5 H 1.08997 * 109.35821 * 137.33084 * 4 3 2 6 6 C 1.52995 * 109.24439 * 256.99008 * 4 3 2 7 7 C 1.53025 * 110.14641 * 17.12729 * 4 3 2 8 8 C 1.53394 * 108.43884 * 310.56295 * 7 4 3 9 9 H 1.08995 * 109.64384 * 307.54119 * 8 7 4 10 10 C 1.52997 * 109.64311 * 187.12063 * 8 7 4 11 11 N 1.46906 * 109.47057 * 180.95095 * 10 8 7 12 12 C 1.46901 * 110.99994 * 158.93307 * 11 10 8 13 13 C 1.50691 * 109.47195 * 189.99667 * 12 11 10 14 14 H 1.08004 * 120.00060 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00328 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00263 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47508 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47474 * 300.00347 * 17 15 13 20 20 H 1.48501 * 109.46939 * 60.00273 * 17 15 13 21 21 C 1.46905 * 110.99570 * 282.88050 * 11 10 8 22 22 C 1.53003 * 109.46636 * 74.33984 * 21 11 10 23 23 C 1.52999 * 117.49630 * 242.01442 * 22 21 11 24 24 C 1.52999 * 117.50017 * 173.39250 * 22 21 11 25 25 C 1.50164 * 117.89222 * 179.79876 * 2 1 3 26 26 H 1.09004 * 109.46801 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46660 * 120.00079 * 1 2 3 28 28 H 1.08995 * 109.47081 * 240.00544 * 1 2 3 29 29 H 1.08000 * 117.96272 * 359.56471 * 3 2 1 30 30 H 1.09005 * 109.46965 * 173.88671 * 6 4 3 31 31 H 1.08995 * 109.47227 * 293.88550 * 6 4 3 32 32 H 1.08995 * 109.47520 * 53.88724 * 6 4 3 33 33 H 1.08999 * 109.64144 * 190.87624 * 7 4 3 34 34 H 1.08999 * 109.64181 * 70.24951 * 7 4 3 35 35 H 1.08998 * 109.47043 * 60.94769 * 10 8 7 36 36 H 1.08996 * 109.47212 * 300.94674 * 10 8 7 37 37 H 1.09001 * 109.47125 * 69.99731 * 12 11 10 38 38 H 1.08997 * 109.46944 * 309.99985 * 12 11 10 39 39 H 0.97000 * 119.99893 * 359.97438 * 16 15 13 40 40 H 1.08998 * 109.46686 * 194.33048 * 21 11 10 41 41 H 1.08990 * 109.47472 * 314.34127 * 21 11 10 42 42 H 1.09000 * 115.54942 * 27.72087 * 22 21 11 43 43 H 1.09001 * 117.50218 * 359.97438 * 23 22 21 44 44 H 1.09003 * 117.49666 * 145.02451 * 23 22 21 45 45 H 1.08996 * 117.50382 * 214.97935 * 24 22 21 46 46 H 1.09009 * 117.49253 * 359.97438 * 24 22 21 47 47 H 1.09005 * 109.20517 * 76.84092 * 25 2 1 48 48 H 1.09009 * 109.55843 * 317.23280 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3032 0.0097 5 1 3.8896 2.0909 -0.6882 6 6 4.0631 1.6854 1.4189 7 6 4.2792 -0.0073 -0.4039 8 6 3.6706 -1.1473 0.4224 9 1 3.7205 -0.8987 1.4825 10 6 4.4433 -2.4416 0.1608 11 7 3.8433 -3.5355 0.9364 12 6 4.1986 -4.8418 0.3661 13 6 3.3776 -5.9187 1.0272 14 1 2.6636 -5.6588 1.7948 15 6 3.5379 -7.2358 0.6524 16 7 4.4077 -7.5524 -0.2818 17 14 2.5208 -8.5707 1.4726 18 1 2.8798 -9.8913 0.8960 19 1 2.7962 -8.5769 2.9318 20 1 1.0779 -8.3054 1.2424 21 6 4.2342 -3.4545 2.3502 22 6 3.4706 -2.3137 3.0258 23 6 4.2913 -1.1577 3.6011 24 6 3.6215 -2.1624 4.5408 25 6 2.2095 -1.3272 0.0047 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5137 0.8900 29 1 1.5089 2.0379 -0.0072 30 1 5.1525 1.6963 1.4571 31 1 3.6808 2.6750 1.6690 32 1 3.6819 0.9571 2.1346 33 1 5.3502 0.0540 -0.2106 34 1 4.1051 -0.1899 -1.4643 35 1 5.4830 -2.3110 0.4611 36 1 4.3994 -2.6827 -0.9012 37 1 5.2575 -5.0365 0.5358 38 1 3.9971 -4.8374 -0.7051 39 1 4.9362 -6.8592 -0.7074 40 1 3.9967 -4.3950 2.8472 41 1 5.3055 -3.2665 2.4207 42 1 2.5004 -2.0747 2.5903 43 1 5.3752 -1.2100 3.4987 44 1 3.8610 -0.1578 3.5442 45 1 2.7508 -1.8235 5.1020 46 1 4.2646 -2.8759 5.0562 47 1 2.1701 -1.7572 -0.9962 48 1 1.7137 -2.0000 0.7045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356199574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:11 Heat of formation + Delta-G solvation = 3.240434 kcal Electronic energy + Delta-G solvation = -23090.800738 eV Core-core repulsion = 20144.989101 eV Total energy + Delta-G solvation = -2945.811637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78760 -38.87439 -37.07615 -35.03286 -34.31617 -32.93659 -28.94141 -28.20897 -27.55751 -27.40188 -25.58998 -23.53103 -23.17141 -22.22572 -21.31373 -21.04308 -18.88438 -18.22875 -16.82798 -16.69127 -16.29146 -15.70846 -15.69704 -15.50408 -15.23488 -14.69971 -14.54610 -14.37201 -14.25390 -13.71229 -13.59483 -13.31646 -13.25033 -13.09559 -12.91643 -12.81641 -12.55545 -12.51585 -12.23637 -12.18379 -12.05596 -11.95666 -11.90910 -11.46129 -11.15914 -11.09498 -10.99767 -10.69143 -10.59140 -10.40549 -9.57238 -9.08769 -8.67441 -6.38006 1.43516 1.52464 1.61031 1.80459 2.55374 2.91157 3.11213 3.17900 3.73635 3.81554 3.91760 3.94672 4.07432 4.16058 4.28790 4.32615 4.34502 4.46110 4.51291 4.61264 4.64789 4.67334 4.70264 4.72495 4.77950 4.82501 4.89215 4.91786 4.95473 4.97027 4.99297 5.02699 5.09515 5.12685 5.14147 5.23729 5.26862 5.28181 5.40661 5.47682 5.50263 5.65321 5.80834 5.87954 6.01773 6.23290 6.43065 6.43515 6.66172 7.42441 8.70632 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.005030 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.879709 B = 5565.342646 C = 5936.755719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 C -0.157 4.157 4 C -0.054 4.054 5 H 0.086 0.914 6 C -0.144 4.144 7 C -0.110 4.110 8 C -0.084 4.084 9 H 0.106 0.894 10 C 0.061 3.939 11 N -0.525 5.525 12 C 0.195 3.805 13 C -0.593 4.593 14 H 0.055 0.945 15 C -0.037 4.037 16 N -0.939 5.939 17 Si 1.120 2.880 18 H -0.284 1.284 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.098 3.902 22 C -0.148 4.148 23 C -0.170 4.170 24 C -0.175 4.175 25 C -0.062 4.062 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.044 0.956 37 H -0.049 1.049 38 H -0.005 1.005 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.044 0.956 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 20.208 5.253 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.131 4.131 3 C -0.175 4.175 4 C -0.073 4.073 5 H 0.104 0.896 6 C -0.201 4.201 7 C -0.148 4.148 8 C -0.102 4.102 9 H 0.124 0.876 10 C -0.067 4.067 11 N -0.248 5.248 12 C 0.069 3.931 13 C -0.631 4.631 14 H 0.073 0.927 15 C -0.234 4.234 16 N -0.577 5.577 17 Si 0.941 3.059 18 H -0.209 1.209 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.031 4.031 22 C -0.166 4.166 23 C -0.207 4.207 24 C -0.212 4.212 25 C -0.099 4.099 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.063 0.937 37 H -0.031 1.031 38 H 0.013 0.987 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.108 0.892 47 H 0.063 0.937 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.102 18.638 5.240 19.791 hybrid contribution 1.482 0.948 -0.630 1.869 sum -2.620 19.586 4.611 20.291 Atomic orbital electron populations 1.20963 0.92030 1.02741 1.01884 1.21071 0.96305 0.94742 1.00951 1.22032 0.96102 0.96889 1.02491 1.19972 0.92153 0.96791 0.98345 0.89598 1.21907 1.01176 1.01620 0.95361 1.21708 0.99615 0.94485 0.99017 1.21471 0.93859 0.92216 1.02667 0.87643 1.22227 0.95341 0.92412 0.96698 1.61888 1.58820 1.02018 1.02113 1.19520 0.92035 0.87809 0.93770 1.22252 1.23927 0.93389 1.23559 0.92669 1.27392 0.98080 1.01946 0.96018 1.70931 1.24326 1.36591 1.25817 0.82902 0.74765 0.72773 0.75498 1.20942 1.19386 1.19541 1.21537 0.94903 0.97886 0.88729 1.22225 1.00900 0.97826 0.95665 1.23186 0.98952 0.94967 1.03586 1.23083 1.03555 1.02549 0.92054 1.20171 0.95117 0.94395 1.00236 0.90705 0.92263 0.92017 0.86662 0.92075 0.91585 0.92728 0.91471 0.92993 0.95991 0.93718 1.03115 0.98654 0.93922 0.92422 0.96543 0.87801 0.89206 0.87067 0.87324 0.89225 0.93722 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.98 71.24 0.71 -1.85 16 2 C -0.13 -3.24 5.84 -15.07 -0.09 -3.33 16 3 C -0.16 -3.33 8.63 27.04 0.23 -3.09 16 4 C -0.05 -1.07 3.13 -11.73 -0.04 -1.11 16 5 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 6 C -0.14 -2.46 8.86 71.98 0.64 -1.83 16 7 C -0.11 -2.68 4.74 30.73 0.15 -2.54 16 8 C -0.08 -2.46 1.69 -10.66 -0.02 -2.47 16 9 H 0.11 2.91 2.24 -2.39 -0.01 2.90 16 10 C 0.06 2.29 4.45 86.30 0.38 2.68 16 11 N -0.53 -23.11 3.90 -900.81 -3.51 -26.62 16 12 C 0.20 10.66 4.01 85.55 0.34 11.00 16 13 C -0.59 -34.50 8.25 25.60 0.21 -34.29 16 14 H 0.06 3.18 7.29 -2.91 -0.02 3.16 16 15 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 16 N -0.94 -59.20 13.65 21.45 0.29 -58.90 16 17 Si 1.12 51.21 29.90 68.60 2.05 53.26 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.10 3.88 5.10 86.30 0.44 4.32 16 22 C -0.15 -4.54 3.82 -10.79 -0.04 -4.58 16 23 C -0.17 -4.03 8.47 30.59 0.26 -3.77 16 24 C -0.18 -4.36 10.25 30.59 0.31 -4.04 16 25 C -0.06 -1.92 4.64 29.69 0.14 -1.78 16 26 H 0.07 1.28 7.56 -2.38 -0.02 1.26 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.12 2.02 7.56 -2.91 -0.02 2.00 16 30 H 0.06 0.98 8.07 -2.38 -0.02 0.96 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.03 4.58 -2.39 -0.01 1.02 16 33 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 34 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 35 H 0.02 0.81 7.72 -2.39 -0.02 0.79 16 36 H 0.04 1.78 7.71 -2.39 -0.02 1.76 16 37 H -0.05 -2.85 7.99 -2.39 -0.02 -2.87 16 38 H 0.00 -0.27 7.68 -2.39 -0.02 -0.28 16 39 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 40 H 0.06 2.63 6.58 -2.39 -0.02 2.61 16 41 H 0.02 0.65 7.48 -2.39 -0.02 0.63 16 42 H 0.10 3.39 6.26 -2.39 -0.01 3.38 16 43 H 0.09 2.13 8.03 -2.39 -0.02 2.11 16 44 H 0.11 2.22 5.99 -2.39 -0.01 2.21 16 45 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 48 H 0.06 2.13 6.78 -2.38 -0.02 2.12 16 Total: -1.00 -65.28 355.99 3.93 -61.35 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.01 Total: 19.33 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 4.09 Total: -48.41 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.22 Total: -85.52 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -65.28 3.93 -61.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.589 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds