Wall clock time and date at job start Mon Mar 30 2020 07:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29444 * 117.96263 * 2 1 4 4 C 1.50063 * 124.07362 * 180.46822 * 3 2 1 5 5 H 1.09006 * 109.35977 * 102.92053 * 4 3 2 6 6 C 1.53005 * 109.35657 * 222.63781 * 4 3 2 7 7 C 1.52973 * 110.29328 * 342.97630 * 4 3 2 8 8 C 1.53396 * 108.45714 * 49.13524 * 7 4 3 9 9 H 1.09005 * 109.64009 * 52.65165 * 8 7 4 10 10 C 1.52998 * 109.64624 * 173.07313 * 8 7 4 11 11 N 1.46898 * 109.47480 * 184.58096 * 10 8 7 12 12 C 1.46899 * 110.99779 * 190.00244 * 11 10 8 13 13 C 1.50704 * 109.47026 * 75.45223 * 12 11 10 14 14 H 1.07997 * 120.00139 * 355.82846 * 13 12 11 15 15 C 1.37875 * 119.99652 * 175.83820 * 13 12 11 16 16 N 1.31512 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99949 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47273 * 89.99797 * 17 15 13 19 19 H 1.48501 * 109.47256 * 209.99496 * 17 15 13 20 20 H 1.48502 * 109.47096 * 329.99832 * 17 15 13 21 21 C 1.46899 * 111.00117 * 66.04550 * 11 10 8 22 22 C 1.52991 * 109.47396 * 195.54447 * 21 11 10 23 23 C 1.53002 * 117.50043 * 244.13238 * 22 21 11 24 24 C 1.52998 * 117.50028 * 175.50953 * 22 21 11 25 25 C 1.50067 * 117.96142 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47275 * 270.01659 * 1 2 3 27 27 H 1.08997 * 109.47584 * 30.02523 * 1 2 3 28 28 H 1.09005 * 109.47379 * 150.02755 * 1 2 3 29 29 H 1.07991 * 117.95806 * 0.44866 * 3 2 1 30 30 H 1.08998 * 109.47054 * 60.00240 * 6 4 3 31 31 H 1.09004 * 109.46864 * 179.97438 * 6 4 3 32 32 H 1.08997 * 109.47263 * 300.00436 * 6 4 3 33 33 H 1.08996 * 109.47180 * 289.54101 * 7 4 3 34 34 H 1.08993 * 109.79626 * 168.91888 * 7 4 3 35 35 H 1.08998 * 109.47054 * 304.58692 * 10 8 7 36 36 H 1.09001 * 109.46582 * 64.58086 * 10 8 7 37 37 H 1.09005 * 109.46636 * 195.44566 * 12 11 10 38 38 H 1.08995 * 109.47499 * 315.44652 * 12 11 10 39 39 H 0.97008 * 120.00096 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47081 * 315.54798 * 21 11 10 41 41 H 1.09002 * 109.46631 * 75.54468 * 21 11 10 42 42 H 1.08999 * 115.54862 * 29.83687 * 22 21 11 43 43 H 1.09006 * 117.49580 * 359.97438 * 23 22 21 44 44 H 1.09000 * 117.50284 * 145.01728 * 23 22 21 45 45 H 1.08999 * 117.49944 * 214.97793 * 24 22 21 46 46 H 1.09003 * 117.49681 * 359.97438 * 24 22 21 47 47 H 1.09003 * 109.36080 * 42.68488 * 25 2 1 48 48 H 1.09002 * 109.36328 * 283.09711 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 -0.0102 5 1 3.9336 1.5740 -1.0139 6 6 4.0042 2.4093 0.9691 7 6 4.2825 -0.0061 0.4000 8 6 3.6705 -1.1474 -0.4221 9 1 3.7173 -0.9008 -1.4829 10 6 4.4433 -2.4417 -0.1605 11 7 3.9251 -3.5059 -1.0304 12 6 4.4736 -4.8135 -0.6464 13 6 3.7916 -5.2955 0.6081 14 1 3.0761 -4.6620 1.1112 15 6 4.0815 -6.5450 1.1136 16 7 4.9525 -7.3165 0.5008 17 14 3.2368 -7.1423 2.6690 18 1 1.9824 -7.8515 2.3100 19 1 4.1390 -8.0702 3.3971 20 1 2.9174 -5.9799 3.5363 21 6 4.2023 -3.2129 -2.4429 22 6 3.3354 -4.1093 -3.3294 23 6 4.0516 -5.1226 -4.2245 24 6 3.4005 -3.8829 -4.8411 25 6 2.2106 -1.3255 0.0006 26 1 -0.3633 0.0003 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3634 -0.8903 -0.5134 29 1 1.5088 2.0378 0.0075 30 1 3.6732 2.1425 1.9727 31 1 5.0879 2.5265 0.9635 32 1 3.5354 3.3463 0.6689 33 1 4.1116 -0.1865 1.4613 34 1 5.3529 0.0540 0.2032 35 1 5.5007 -2.2825 -0.3715 36 1 4.3209 -2.7333 0.8827 37 1 4.3030 -5.5293 -1.4506 38 1 5.5441 -4.7193 -0.4648 39 1 5.1562 -8.1958 0.8562 40 1 3.9731 -2.1674 -2.6489 41 1 5.2548 -3.4025 -2.6535 42 1 2.3751 -4.4024 -2.9052 43 1 5.1405 -5.1503 -4.1821 44 1 3.5626 -6.0827 -4.3893 45 1 2.4830 -4.0275 -5.4116 46 1 4.0606 -3.0951 -5.2041 47 1 1.7123 -1.9994 -0.6963 48 1 2.1742 -1.7535 1.0024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356199591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:14 Heat of formation + Delta-G solvation = 1.023205 kcal Electronic energy + Delta-G solvation = -22464.564770 eV Core-core repulsion = 19518.656987 eV Total energy + Delta-G solvation = -2945.907783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42136 -38.93774 -36.93483 -34.78604 -34.30607 -33.05987 -29.53732 -28.03305 -27.41308 -27.28554 -25.65033 -23.19953 -23.00502 -21.93185 -21.55418 -20.72101 -18.56262 -18.46693 -16.97030 -16.53639 -16.32763 -16.09472 -15.64440 -15.19880 -15.04192 -14.76637 -14.45722 -14.34554 -14.09433 -13.78201 -13.37922 -13.23831 -13.15725 -13.03309 -12.96919 -12.66219 -12.55571 -12.44515 -12.35458 -12.24149 -12.21403 -11.94777 -11.88667 -11.54961 -11.37461 -11.10276 -11.00533 -10.89490 -10.61907 -10.51459 -9.51264 -8.94250 -8.16512 -6.25384 1.39632 1.40728 1.45941 1.51567 2.40922 2.94267 3.14636 3.28447 3.75247 3.82379 3.94591 4.03031 4.08064 4.21863 4.24567 4.37222 4.45132 4.46918 4.57812 4.60951 4.70414 4.72493 4.78777 4.80126 4.83242 4.86268 4.92445 4.97698 4.99268 5.02501 5.04944 5.07376 5.16636 5.24784 5.26508 5.28088 5.32320 5.35354 5.42579 5.44310 5.48317 5.62020 5.70654 5.90676 6.13424 6.24118 6.45987 6.70794 6.90730 7.43464 8.93853 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.005671 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.932363 B = 4936.631075 C = 6190.969565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 C -0.160 4.160 4 C -0.056 4.056 5 H 0.081 0.919 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.069 4.069 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.532 5.532 12 C 0.211 3.789 13 C -0.513 4.513 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.962 3.038 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.088 3.912 22 C -0.152 4.152 23 C -0.194 4.194 24 C -0.149 4.149 25 C -0.062 4.062 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.054 0.946 37 H 0.014 0.986 38 H -0.049 1.049 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.011 0.989 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 17.666 -4.676 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.074 4.074 5 H 0.099 0.901 6 C -0.195 4.195 7 C -0.146 4.146 8 C -0.088 4.088 9 H 0.091 0.909 10 C -0.056 4.056 11 N -0.255 5.255 12 C 0.085 3.915 13 C -0.552 4.552 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.040 4.040 22 C -0.171 4.171 23 C -0.231 4.231 24 C -0.186 4.186 25 C -0.099 4.099 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.032 0.968 38 H -0.031 1.031 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.030 0.970 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.082 0.918 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.230 17.483 -4.593 18.818 hybrid contribution 0.834 -1.213 0.798 1.674 sum -4.396 16.270 -3.795 17.275 Atomic orbital electron populations 1.20938 0.91855 1.02594 1.02139 1.21097 0.96460 0.94751 1.00828 1.22017 0.95968 0.97009 1.02752 1.19969 0.92401 0.94885 1.00143 0.90053 1.21748 1.01520 0.97641 0.98542 1.21684 0.99529 0.93914 0.99425 1.21145 0.94704 0.92983 0.99972 0.90895 1.22016 0.94938 0.91344 0.97307 1.62018 1.59296 1.02448 1.01780 1.19353 0.90401 0.86331 0.95410 1.21449 1.23553 1.00664 1.09504 0.92336 1.25833 0.96012 0.96927 1.00747 1.70089 1.35343 1.10378 1.41757 0.85492 0.78290 0.78216 0.79282 1.19946 1.20856 1.19060 1.21674 0.95077 0.99030 0.88215 1.22163 1.00729 1.02029 0.92140 1.22975 0.99325 0.94866 1.05932 1.23017 1.03039 0.98884 0.93707 1.20181 0.94545 0.94454 1.00702 0.91558 0.90733 0.92487 0.86691 0.93206 0.92053 0.91459 0.92633 0.91455 0.96761 0.92750 0.96779 1.03107 0.92903 0.89363 0.97046 0.89058 0.90068 0.89457 0.87283 0.87606 0.91822 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.87 71.23 0.70 -1.83 16 2 C -0.13 -3.31 5.84 -15.10 -0.09 -3.40 16 3 C -0.16 -3.49 8.61 27.04 0.23 -3.26 16 4 C -0.06 -1.16 2.96 -11.75 -0.03 -1.20 16 5 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 6 C -0.14 -2.33 9.14 71.98 0.66 -1.68 16 7 C -0.11 -2.74 4.61 30.72 0.14 -2.60 16 8 C -0.07 -2.10 2.17 -10.65 -0.02 -2.13 16 9 H 0.07 2.13 6.10 -2.38 -0.01 2.11 16 10 C 0.07 2.80 4.18 86.30 0.36 3.16 16 11 N -0.53 -23.03 4.07 -900.81 -3.66 -26.70 16 12 C 0.21 11.45 4.59 85.56 0.39 11.85 16 13 C -0.51 -29.62 8.60 25.60 0.22 -29.40 16 14 H 0.06 3.34 7.66 -2.91 -0.02 3.32 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 17 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 C 0.09 3.22 5.11 86.30 0.44 3.66 16 22 C -0.15 -5.29 4.96 -10.80 -0.05 -5.34 16 23 C -0.19 -6.38 9.97 30.60 0.31 -6.07 16 24 C -0.15 -3.90 10.25 30.59 0.31 -3.58 16 25 C -0.06 -1.92 4.90 29.66 0.15 -1.78 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16 28 H 0.06 1.28 8.03 -2.38 -0.02 1.26 16 29 H 0.12 2.10 7.81 -2.92 -0.02 2.08 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 36 H 0.05 2.38 7.27 -2.39 -0.02 2.36 16 37 H 0.01 0.82 6.94 -2.38 -0.02 0.81 16 38 H -0.05 -2.90 8.00 -2.39 -0.02 -2.92 16 39 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 40 H 0.09 2.78 5.88 -2.39 -0.01 2.77 16 41 H 0.01 0.44 7.79 -2.39 -0.02 0.42 16 42 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.08 2.76 8.03 -2.38 -0.02 2.74 16 44 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 48 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -63.58 372.86 3.70 -59.88 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.88 Total: 19.44 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.18 Total: -42.99 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.38 Total: -83.66 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -63.58 3.70 -59.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.906 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds