Wall clock time and date at job start Mon Mar 30 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29443 * 117.96744 * 2 1 4 4 C 1.50063 * 124.08290 * 180.44786 * 3 2 1 5 5 H 1.09000 * 109.35785 * 222.66268 * 4 3 2 6 6 C 1.53001 * 109.36125 * 103.07029 * 4 3 2 7 7 C 1.53029 * 110.14097 * 342.86547 * 4 3 2 8 8 C 1.53395 * 108.43955 * 49.44107 * 7 4 3 9 9 H 1.08992 * 109.81667 * 52.34815 * 8 7 4 10 10 C 1.52996 * 109.64172 * 172.88011 * 8 7 4 11 11 N 1.46904 * 109.47008 * 184.46162 * 10 8 7 12 12 C 1.46894 * 111.00235 * 75.43357 * 11 10 8 13 13 C 1.50695 * 109.47234 * 195.50099 * 12 11 10 14 14 H 1.08009 * 119.99814 * 5.04960 * 13 12 11 15 15 C 1.37870 * 120.00378 * 185.05314 * 13 12 11 16 16 N 1.31514 * 120.00183 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00192 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47251 * 90.00042 * 17 15 13 19 19 H 1.48497 * 109.47113 * 209.99807 * 17 15 13 20 20 H 1.48500 * 109.46993 * 329.99658 * 17 15 13 21 21 C 1.46900 * 110.99609 * 199.39224 * 11 10 8 22 22 C 1.53002 * 109.47419 * 68.24382 * 21 11 10 23 23 C 1.53005 * 117.49526 * 243.14605 * 22 21 11 24 24 C 1.52996 * 117.49822 * 174.48654 * 22 21 11 25 25 C 1.50074 * 117.96044 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47083 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46890 * 119.99960 * 1 2 3 28 28 H 1.09002 * 109.47196 * 239.99926 * 1 2 3 29 29 H 1.07999 * 117.95664 * 0.16403 * 3 2 1 30 30 H 1.09000 * 109.46530 * 60.00523 * 6 4 3 31 31 H 1.08997 * 109.47265 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46855 * 300.00576 * 6 4 3 33 33 H 1.09000 * 109.64619 * 289.74835 * 7 4 3 34 34 H 1.09010 * 109.63970 * 169.12239 * 7 4 3 35 35 H 1.09006 * 109.47272 * 304.45437 * 10 8 7 36 36 H 1.08995 * 109.47417 * 64.45268 * 10 8 7 37 37 H 1.09000 * 109.47322 * 315.50653 * 12 11 10 38 38 H 1.09009 * 109.47190 * 75.50361 * 12 11 10 39 39 H 0.97000 * 120.00360 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47042 * 188.24144 * 21 11 10 41 41 H 1.08997 * 109.47358 * 308.23967 * 21 11 10 42 42 H 1.08994 * 115.55099 * 28.81362 * 22 21 11 43 43 H 1.08995 * 117.49958 * 0.02562 * 23 22 21 44 44 H 1.09002 * 117.49287 * 145.02218 * 23 22 21 45 45 H 1.08998 * 117.49905 * 214.97705 * 24 22 21 46 46 H 1.09001 * 117.49938 * 359.97438 * 24 22 21 47 47 H 1.09003 * 109.35439 * 283.09711 * 25 2 1 48 48 H 1.08994 * 109.36158 * 42.68761 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3031 -0.0097 5 1 3.8895 2.0910 0.6881 6 6 4.0659 1.6869 -1.4176 7 6 4.2791 -0.0074 0.4041 8 6 3.6705 -1.1475 -0.4222 9 1 3.7174 -0.9009 -1.4828 10 6 4.4432 -2.4417 -0.1603 11 7 3.9266 -3.5054 -1.0320 12 6 4.3948 -3.3283 -2.4130 13 6 3.5657 -4.1815 -3.3379 14 1 2.7193 -4.7306 -2.9524 15 6 3.8875 -4.2611 -4.6761 16 7 4.9178 -3.5921 -5.1457 17 14 2.8592 -5.3182 -5.8228 18 1 1.7561 -4.5030 -6.3916 19 1 3.7142 -5.8307 -6.9234 20 1 2.2900 -6.4614 -5.0648 21 6 4.2930 -4.8317 -0.5178 22 6 3.5403 -5.0987 0.7873 23 6 4.3724 -5.2768 2.0589 24 6 3.6872 -6.4855 1.4165 25 6 2.2106 -1.3256 0.0006 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3634 -0.5138 0.8900 29 1 1.5089 2.0378 0.0027 30 1 3.5969 2.6266 -1.7094 31 1 5.1496 1.8031 -1.4268 32 1 3.7787 0.9041 -2.1196 33 1 4.1050 -0.1899 1.4645 34 1 5.3502 0.0539 0.2109 35 1 5.5010 -2.2822 -0.3698 36 1 4.3195 -2.7342 0.8824 37 1 4.2962 -2.2810 -2.6986 38 1 5.4408 -3.6270 -2.4831 39 1 5.1440 -3.6478 -6.0873 40 1 4.0277 -5.5922 -1.2522 41 1 5.3664 -4.8654 -0.3315 42 1 2.5748 -4.6022 0.8831 43 1 5.4559 -5.2034 1.9658 44 1 3.9539 -4.8978 2.9913 45 1 2.8183 -6.9013 1.9266 46 1 4.3196 -7.2079 0.9005 47 1 2.1741 -1.7535 1.0025 48 1 1.7124 -1.9994 -0.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356199600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:16 Heat of formation + Delta-G solvation = 13.928132 kcal Electronic energy + Delta-G solvation = -22677.522574 eV Core-core repulsion = 19732.174390 eV Total energy + Delta-G solvation = -2945.348183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.20918 -37.62119 -35.44848 -33.24840 -32.66444 -31.47622 -27.42933 -26.82106 -26.30164 -26.13663 -23.76130 -22.18130 -21.71050 -20.77798 -19.96714 -19.31583 -17.13306 -16.29092 -15.50088 -15.22300 -14.80127 -14.47449 -14.15160 -13.93920 -13.61251 -13.50209 -13.34572 -12.83811 -12.62593 -12.34815 -12.22473 -11.89510 -11.73840 -11.62882 -11.57561 -11.25766 -11.14433 -11.01113 -10.99373 -10.83585 -10.60002 -10.53734 -10.09103 -9.99212 -9.84701 -9.78832 -9.51799 -9.41214 -9.10829 -8.45389 -8.37997 -7.15944 -5.98724 -3.99516 2.54983 3.33767 3.39919 3.43547 4.13739 4.45227 4.77242 4.92637 5.01952 5.13280 5.25545 5.27687 5.36343 5.37197 5.45821 5.52778 5.64492 5.71222 5.80405 5.83902 5.87264 5.88462 5.91443 5.99219 6.06862 6.09734 6.12096 6.17817 6.20357 6.23861 6.26815 6.34228 6.36558 6.40633 6.51458 6.55302 6.60582 6.77238 6.83755 6.98611 7.02500 7.34203 7.36721 7.41998 7.87836 8.18528 8.27662 8.61760 9.09598 9.64746 11.11710 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.006403 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.634508 B = 4371.639316 C = 5770.591345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.168 4.168 4 C -0.054 4.054 5 H 0.067 0.933 6 C -0.144 4.144 7 C -0.110 4.110 8 C -0.079 4.079 9 H 0.081 0.919 10 C 0.062 3.938 11 N -0.531 5.531 12 C 0.193 3.807 13 C -0.503 4.503 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.094 3.906 22 C -0.131 4.131 23 C -0.191 4.191 24 C -0.184 4.184 25 C -0.065 4.065 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.029 0.971 38 H -0.008 1.008 39 H 0.260 0.740 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 5.453 13.092 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.113 4.113 3 C -0.186 4.186 4 C -0.073 4.073 5 H 0.085 0.915 6 C -0.201 4.201 7 C -0.148 4.148 8 C -0.098 4.098 9 H 0.099 0.901 10 C -0.067 4.067 11 N -0.255 5.255 12 C 0.068 3.932 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.035 4.035 22 C -0.150 4.150 23 C -0.229 4.229 24 C -0.222 4.222 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.010 0.990 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.646 5.519 12.903 14.500 hybrid contribution 0.377 -0.527 -0.734 0.979 sum -3.269 4.992 12.170 13.554 Atomic orbital electron populations 1.20962 0.93195 1.01549 1.02039 1.21086 0.95382 0.95751 0.99037 1.21790 0.95577 0.96718 1.04519 1.19915 0.92656 0.97473 0.97222 0.91486 1.21837 1.00468 1.01332 0.96463 1.21695 0.99253 0.94405 0.99446 1.21197 0.94365 0.93540 1.00667 0.90066 1.22065 0.95508 0.92152 0.96974 1.62032 1.59732 0.99830 1.03906 1.19734 0.93863 0.97361 0.82254 1.21181 1.13025 1.27549 0.92399 0.91879 1.24978 0.95295 0.96066 0.98271 1.69958 1.27262 1.42362 1.14341 0.86560 0.80079 0.80681 0.80464 1.20724 1.21429 1.19871 1.21536 0.94762 0.93433 0.93721 1.22447 1.00847 0.98321 0.93381 1.23027 0.98948 1.03470 0.97406 1.22906 1.02868 0.91768 1.04638 1.20279 0.94951 0.93575 1.01432 0.92775 0.91540 0.92106 0.88816 0.93228 0.92812 0.91756 0.92362 0.92123 0.96080 0.92075 0.95299 0.99032 0.93049 0.89560 0.96376 0.87432 0.89409 0.89585 0.89368 0.89118 0.91901 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.98 36.00 0.36 -1.11 16 2 C -0.11 -1.60 5.84 -100.94 -0.59 -2.19 16 3 C -0.17 -2.27 8.64 -35.90 -0.31 -2.58 16 4 C -0.05 -0.71 3.12 -92.06 -0.29 -1.00 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.14 -1.94 8.97 37.16 0.33 -1.61 16 7 C -0.11 -1.53 4.74 -26.51 -0.13 -1.66 16 8 C -0.08 -1.30 2.23 -90.40 -0.20 -1.51 16 9 H 0.08 1.58 4.95 -51.93 -0.26 1.33 16 10 C 0.06 1.09 4.23 -3.82 -0.02 1.08 16 11 N -0.53 -10.97 4.05 -236.07 -0.96 -11.93 16 12 C 0.19 4.91 4.56 -4.98 -0.02 4.89 16 13 C -0.50 -13.92 8.35 -34.45 -0.29 -14.20 16 14 H 0.06 1.74 7.72 -52.48 -0.41 1.34 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.09 1.79 5.09 -3.82 -0.02 1.78 16 22 C -0.13 -2.05 4.77 -90.62 -0.43 -2.48 16 23 C -0.19 -2.53 9.98 -26.69 -0.27 -2.80 16 24 C -0.18 -2.47 10.25 -26.69 -0.27 -2.75 16 25 C -0.07 -1.03 4.91 -28.17 -0.14 -1.16 16 26 H 0.05 0.59 7.56 -51.93 -0.39 0.19 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.15 7.56 -52.49 -0.40 0.75 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.01 6.59 -51.93 -0.34 0.67 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.06 0.83 8.11 -51.92 -0.42 0.41 16 35 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 36 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 37 H 0.03 0.79 6.47 -51.93 -0.34 0.45 16 38 H -0.01 -0.23 8.06 -51.92 -0.42 -0.65 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 1.84 7.15 -51.93 -0.37 1.47 16 41 H 0.02 0.35 7.83 -51.93 -0.41 -0.06 16 42 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 48 H 0.09 1.54 8.06 -51.93 -0.42 1.12 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -28.29 369.93 -11.17 -39.46 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -9.13 Total: 1.99 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.38 Total: -25.85 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.22 Total: -37.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.29 -11.17 -39.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.392 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds