Wall clock time and date at job start Mon Mar 30 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29443 * 117.96744 * 2 1 4 4 C 1.50063 * 124.08290 * 180.44786 * 3 2 1 5 5 H 1.09000 * 109.35785 * 222.66268 * 4 3 2 6 6 C 1.53001 * 109.36125 * 103.07029 * 4 3 2 7 7 C 1.53029 * 110.14097 * 342.86547 * 4 3 2 8 8 C 1.53395 * 108.43955 * 49.44107 * 7 4 3 9 9 H 1.08992 * 109.81667 * 52.34815 * 8 7 4 10 10 C 1.52996 * 109.64172 * 172.88011 * 8 7 4 11 11 N 1.46904 * 109.47008 * 184.46162 * 10 8 7 12 12 C 1.46894 * 111.00235 * 75.43357 * 11 10 8 13 13 C 1.50695 * 109.47234 * 195.50099 * 12 11 10 14 14 H 1.08009 * 119.99814 * 5.04960 * 13 12 11 15 15 C 1.37870 * 120.00378 * 185.05314 * 13 12 11 16 16 N 1.31514 * 120.00183 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00192 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47251 * 90.00042 * 17 15 13 19 19 H 1.48497 * 109.47113 * 209.99807 * 17 15 13 20 20 H 1.48500 * 109.46993 * 329.99658 * 17 15 13 21 21 C 1.46900 * 110.99609 * 199.39224 * 11 10 8 22 22 C 1.53002 * 109.47419 * 68.24382 * 21 11 10 23 23 C 1.53005 * 117.49526 * 243.14605 * 22 21 11 24 24 C 1.52996 * 117.49822 * 174.48654 * 22 21 11 25 25 C 1.50074 * 117.96044 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47083 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46890 * 119.99960 * 1 2 3 28 28 H 1.09002 * 109.47196 * 239.99926 * 1 2 3 29 29 H 1.07999 * 117.95664 * 0.16403 * 3 2 1 30 30 H 1.09000 * 109.46530 * 60.00523 * 6 4 3 31 31 H 1.08997 * 109.47265 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.46855 * 300.00576 * 6 4 3 33 33 H 1.09000 * 109.64619 * 289.74835 * 7 4 3 34 34 H 1.09010 * 109.63970 * 169.12239 * 7 4 3 35 35 H 1.09006 * 109.47272 * 304.45437 * 10 8 7 36 36 H 1.08995 * 109.47417 * 64.45268 * 10 8 7 37 37 H 1.09000 * 109.47322 * 315.50653 * 12 11 10 38 38 H 1.09009 * 109.47190 * 75.50361 * 12 11 10 39 39 H 0.97000 * 120.00360 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47042 * 188.24144 * 21 11 10 41 41 H 1.08997 * 109.47358 * 308.23967 * 21 11 10 42 42 H 1.08994 * 115.55099 * 28.81362 * 22 21 11 43 43 H 1.08995 * 117.49958 * 0.02562 * 23 22 21 44 44 H 1.09002 * 117.49287 * 145.02218 * 23 22 21 45 45 H 1.08998 * 117.49905 * 214.97705 * 24 22 21 46 46 H 1.09001 * 117.49938 * 359.97438 * 24 22 21 47 47 H 1.09003 * 109.35439 * 283.09711 * 25 2 1 48 48 H 1.08994 * 109.36158 * 42.68761 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3031 -0.0097 5 1 3.8895 2.0910 0.6881 6 6 4.0659 1.6869 -1.4176 7 6 4.2791 -0.0074 0.4041 8 6 3.6705 -1.1475 -0.4222 9 1 3.7174 -0.9009 -1.4828 10 6 4.4432 -2.4417 -0.1603 11 7 3.9266 -3.5054 -1.0320 12 6 4.3948 -3.3283 -2.4130 13 6 3.5657 -4.1815 -3.3379 14 1 2.7193 -4.7306 -2.9524 15 6 3.8875 -4.2611 -4.6761 16 7 4.9178 -3.5921 -5.1457 17 14 2.8592 -5.3182 -5.8228 18 1 1.7561 -4.5030 -6.3916 19 1 3.7142 -5.8307 -6.9234 20 1 2.2900 -6.4614 -5.0648 21 6 4.2930 -4.8317 -0.5178 22 6 3.5403 -5.0987 0.7873 23 6 4.3724 -5.2768 2.0589 24 6 3.6872 -6.4855 1.4165 25 6 2.2106 -1.3256 0.0006 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3634 -0.5138 0.8900 29 1 1.5089 2.0378 0.0027 30 1 3.5969 2.6266 -1.7094 31 1 5.1496 1.8031 -1.4268 32 1 3.7787 0.9041 -2.1196 33 1 4.1050 -0.1899 1.4645 34 1 5.3502 0.0539 0.2109 35 1 5.5010 -2.2822 -0.3698 36 1 4.3195 -2.7342 0.8824 37 1 4.2962 -2.2810 -2.6986 38 1 5.4408 -3.6270 -2.4831 39 1 5.1440 -3.6478 -6.0873 40 1 4.0277 -5.5922 -1.2522 41 1 5.3664 -4.8654 -0.3315 42 1 2.5748 -4.6022 0.8831 43 1 5.4559 -5.2034 1.9658 44 1 3.9539 -4.8978 2.9913 45 1 2.8183 -6.9013 1.9266 46 1 4.3196 -7.2079 0.9005 47 1 2.1741 -1.7535 1.0025 48 1 1.7124 -1.9994 -0.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356199600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:16 Heat of formation + Delta-G solvation = 0.860170 kcal Electronic energy + Delta-G solvation = -22678.089243 eV Core-core repulsion = 19732.174390 eV Total energy + Delta-G solvation = -2945.914853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47560 -38.95862 -36.90862 -34.75662 -34.27618 -32.93835 -29.42621 -28.05407 -27.51687 -27.34581 -25.56352 -23.43723 -23.08983 -22.08227 -21.23448 -20.82871 -18.70883 -18.03942 -16.91093 -16.68409 -16.36204 -15.77410 -15.71228 -15.23468 -15.04058 -14.78692 -14.57185 -14.30880 -14.01384 -13.65718 -13.50527 -13.46651 -13.28062 -13.15992 -12.86050 -12.78090 -12.50237 -12.34832 -12.30767 -12.20491 -12.14317 -12.10417 -11.88450 -11.32908 -11.24949 -11.09311 -10.99814 -10.90774 -10.66064 -10.54532 -9.54088 -8.94359 -8.18630 -6.28180 1.39061 1.40314 1.46555 1.51426 2.39874 2.96756 3.13212 3.26974 3.79583 3.84763 3.93380 4.06821 4.13234 4.18885 4.29919 4.37055 4.41565 4.48619 4.59277 4.64430 4.70455 4.74584 4.80300 4.81654 4.85981 4.89791 4.92607 4.97026 4.98221 5.00995 5.07629 5.08066 5.12584 5.22539 5.23080 5.30969 5.33354 5.34893 5.39792 5.44304 5.51452 5.64644 5.68968 5.91467 6.11845 6.26093 6.42990 6.71012 6.89308 7.41384 8.91766 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.006403 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.634508 B = 4371.639316 C = 5770.591345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.164 4.164 4 C -0.055 4.055 5 H 0.094 0.906 6 C -0.142 4.142 7 C -0.104 4.104 8 C -0.075 4.075 9 H 0.042 0.958 10 C 0.066 3.934 11 N -0.530 5.530 12 C 0.213 3.787 13 C -0.516 4.516 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.098 3.902 22 C -0.150 4.150 23 C -0.172 4.172 24 C -0.173 4.173 25 C -0.057 4.057 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.007 0.993 36 H 0.085 0.915 37 H 0.004 0.996 38 H -0.044 1.044 39 H 0.263 0.737 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 5.730 15.217 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.182 4.182 4 C -0.073 4.073 5 H 0.112 0.888 6 C -0.199 4.199 7 C -0.142 4.142 8 C -0.094 4.094 9 H 0.061 0.939 10 C -0.062 4.062 11 N -0.254 5.254 12 C 0.086 3.914 13 C -0.554 4.554 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.189 1.189 21 C -0.031 4.031 22 C -0.169 4.169 23 C -0.209 4.209 24 C -0.211 4.211 25 C -0.094 4.094 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.104 0.896 37 H 0.022 0.978 38 H -0.026 1.026 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.883 5.792 15.052 16.851 hybrid contribution 0.820 -0.603 -1.381 1.715 sum -4.063 5.189 13.671 15.177 Atomic orbital electron populations 1.20945 0.91739 1.02663 1.02050 1.21163 0.96571 0.95080 1.00307 1.22008 0.95889 0.97135 1.03153 1.19981 0.92514 0.97557 0.97236 0.88804 1.21809 1.00999 1.00869 0.96242 1.21664 0.99109 0.93733 0.99732 1.21105 0.95434 0.93903 0.98995 0.93931 1.22134 0.94753 0.91939 0.97398 1.61990 1.59572 1.01627 1.02209 1.19324 0.91581 0.95272 0.85190 1.21450 1.13083 1.27711 0.93205 0.92175 1.25873 0.96445 0.97315 0.99967 1.70091 1.28884 1.43779 1.14837 0.85463 0.78432 0.79049 0.78187 1.19984 1.20790 1.18851 1.21465 0.94962 0.91609 0.95020 1.22171 1.00976 1.01126 0.92626 1.23101 0.98723 1.02401 0.96650 1.23011 1.03530 0.90869 1.03665 1.20130 0.93926 0.94316 1.01055 0.91090 0.92666 0.90974 0.86884 0.91644 0.92296 0.95121 0.90617 0.92161 0.97498 0.89639 0.97846 1.02648 0.92849 0.92563 0.97002 0.87626 0.89444 0.87200 0.87241 0.89353 0.90698 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.98 71.23 0.71 -1.98 16 2 C -0.13 -3.59 5.84 -15.10 -0.09 -3.67 16 3 C -0.16 -4.10 8.64 27.04 0.23 -3.87 16 4 C -0.05 -1.34 3.12 -11.73 -0.04 -1.37 16 5 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 6 C -0.14 -3.79 8.97 71.98 0.65 -3.14 16 7 C -0.10 -2.80 4.74 30.74 0.15 -2.66 16 8 C -0.08 -2.56 2.23 -10.65 -0.02 -2.59 16 9 H 0.04 1.79 4.95 -2.39 -0.01 1.77 16 10 C 0.07 2.40 4.23 86.30 0.36 2.77 16 11 N -0.53 -23.06 4.05 -900.80 -3.65 -26.71 16 12 C 0.21 11.60 4.56 85.56 0.39 11.99 16 13 C -0.52 -29.89 8.35 25.60 0.21 -29.68 16 14 H 0.06 3.45 7.72 -2.91 -0.02 3.42 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.94 -57.49 13.29 21.44 0.28 -57.20 16 17 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 C 0.10 3.87 5.09 86.30 0.44 4.31 16 22 C -0.15 -4.56 4.77 -10.79 -0.05 -4.61 16 23 C -0.17 -4.10 9.98 30.62 0.31 -3.79 16 24 C -0.17 -4.29 10.25 30.62 0.31 -3.97 16 25 C -0.06 -1.80 4.91 29.66 0.15 -1.66 16 26 H 0.07 1.37 7.56 -2.39 -0.02 1.35 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 2.41 7.56 -2.91 -0.02 2.39 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.01 6.59 -2.39 -0.02 0.99 16 33 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 34 H 0.06 1.62 8.11 -2.38 -0.02 1.60 16 35 H 0.01 0.27 8.00 -2.38 -0.02 0.25 16 36 H 0.09 2.70 6.74 -2.39 -0.02 2.68 16 37 H 0.00 0.21 6.47 -2.39 -0.02 0.19 16 38 H -0.04 -2.67 8.06 -2.38 -0.02 -2.69 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.06 2.53 7.15 -2.39 -0.02 2.51 16 41 H 0.01 0.47 7.83 -2.39 -0.02 0.46 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 44 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 48 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 Total: -1.00 -64.13 369.93 3.71 -60.41 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.88 Total: 19.53 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 4.17 Total: -43.36 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.37 Total: -83.92 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -64.13 3.71 -60.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.275 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds