Wall clock time and date at job start Mon Mar 30 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00136 * 2 1 4 4 C 1.53006 * 109.46924 * 199.81721 * 3 2 1 5 5 H 1.09000 * 109.46803 * 305.88155 * 4 3 2 6 6 C 1.52992 * 109.47484 * 65.88421 * 4 3 2 7 7 C 1.53004 * 109.47281 * 119.99866 * 6 4 3 8 8 C 1.52997 * 109.46863 * 59.99967 * 7 6 4 9 9 C 1.53002 * 109.47221 * 300.00144 * 8 7 6 10 10 C 1.52991 * 109.47192 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.46962 * 299.99655 * 10 9 8 12 12 C 1.53002 * 109.47166 * 300.00378 * 7 6 4 13 13 C 1.46900 * 110.99736 * 123.95346 * 2 1 3 14 14 C 1.52998 * 109.47395 * 71.87092 * 13 2 1 15 15 C 1.50697 * 115.55197 * 39.50712 * 14 13 2 16 16 H 1.08000 * 120.00571 * 272.86898 * 15 14 13 17 17 C 1.37882 * 120.00037 * 92.86178 * 15 14 13 18 18 N 1.31510 * 119.99682 * 4.37892 * 17 15 14 19 19 Si 1.86799 * 120.00012 * 184.37013 * 17 15 14 20 20 H 1.48493 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46645 * 120.00684 * 19 17 15 22 22 H 1.48504 * 109.46866 * 240.00183 * 19 17 15 23 23 C 1.52996 * 117.49665 * 253.80485 * 14 13 2 24 24 C 1.53003 * 117.49969 * 185.18109 * 14 13 2 25 25 H 1.09003 * 109.47376 * 54.89022 * 1 2 3 26 26 H 1.09003 * 109.47365 * 174.88879 * 1 2 3 27 27 H 1.09005 * 109.47277 * 294.88671 * 1 2 3 28 28 H 1.08999 * 109.46930 * 79.81585 * 3 2 1 29 29 H 1.09004 * 109.47177 * 319.81152 * 3 2 1 30 30 H 1.09008 * 109.47163 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47622 * 239.99851 * 6 4 3 32 32 H 1.08997 * 109.47366 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47149 * 60.00022 * 8 7 6 34 34 H 1.09002 * 109.47273 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47418 * 239.99751 * 9 8 7 36 36 H 1.09004 * 109.46672 * 119.99833 * 9 8 7 37 37 H 1.08997 * 109.47511 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.46950 * 300.00044 * 11 10 9 39 39 H 1.09000 * 109.46841 * 180.02562 * 11 10 9 40 40 H 1.08996 * 109.47531 * 179.97438 * 12 7 6 41 41 H 1.09005 * 109.47187 * 300.00021 * 12 7 6 42 42 H 1.09010 * 109.47180 * 191.86790 * 13 2 1 43 43 H 1.08996 * 109.47265 * 311.86367 * 13 2 1 44 44 H 0.96996 * 120.00332 * 184.99961 * 18 17 15 45 45 H 1.09001 * 117.50455 * 359.97438 * 23 14 13 46 46 H 1.09000 * 117.50230 * 145.02246 * 23 14 13 47 47 H 1.09002 * 117.49691 * 214.97561 * 24 14 13 48 48 H 1.09000 * 117.49879 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4452 1.3611 -0.4891 5 1 4.0257 0.6596 0.1101 6 6 3.4852 0.9327 -1.9572 7 6 4.1067 2.0499 -2.7978 8 6 5.5297 2.3253 -2.3079 9 6 5.4897 2.7537 -0.8397 10 6 4.0401 2.7634 -0.3505 11 6 3.2247 3.7478 -1.1914 12 6 3.2651 3.3202 -2.6599 13 6 1.9953 -0.7660 1.1376 14 6 1.7591 -2.2589 0.9004 15 6 1.9701 -2.7336 -0.5142 16 1 1.1592 -2.6876 -1.2260 17 6 3.1987 -3.2266 -0.8999 18 7 4.1602 -3.3631 -0.0131 19 14 3.4972 -3.7009 -2.6818 20 1 2.2653 -3.4532 -3.4730 21 1 4.6102 -2.8856 -3.2311 22 1 3.8538 -5.1405 -2.7578 23 6 0.6582 -2.9384 1.7171 24 6 2.1287 -3.2211 2.0311 25 1 -0.3634 0.5911 -0.8407 26 1 -0.3634 -1.0236 -0.0916 27 1 -0.3634 0.4325 0.9323 28 1 1.9560 1.7757 1.0115 29 1 1.3927 1.9920 -0.6632 30 1 2.4713 0.7369 -2.3064 31 1 4.0847 0.0278 -2.0555 32 1 4.1347 1.7449 -3.8439 33 1 6.1292 1.4203 -2.4061 34 1 5.9723 3.1215 -2.9065 35 1 5.9135 3.7531 -0.7411 36 1 6.0702 2.0521 -0.2406 37 1 4.0116 3.0681 0.6956 38 1 3.6481 4.7474 -1.0929 39 1 2.1920 3.7550 -0.8426 40 1 3.7080 4.1163 -3.2584 41 1 2.2512 3.1241 -3.0089 42 1 3.0645 -0.5788 1.2381 43 1 1.4853 -0.4579 2.0503 44 1 5.0454 -3.6407 -0.2963 45 1 0.1025 -2.3220 2.4238 46 1 0.0863 -3.7290 1.2314 47 1 2.5243 -4.1977 1.7517 48 1 2.5407 -2.7906 2.9438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400447048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:30 Heat of formation + Delta-G solvation = 6.910466 kcal Electronic energy + Delta-G solvation = -23701.065870 eV Core-core repulsion = 20755.413378 eV Total energy + Delta-G solvation = -2945.652492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29784 -37.39144 -35.08278 -31.70342 -31.42883 -30.75718 -30.58684 -26.77002 -25.94076 -25.00839 -22.41156 -22.24269 -21.46130 -20.92477 -20.12994 -18.85354 -16.32535 -16.16259 -15.70695 -15.60467 -15.15293 -14.50927 -14.28168 -13.99082 -13.54186 -13.13899 -12.74988 -12.37617 -12.24404 -11.88976 -11.85187 -11.71089 -11.66159 -11.57358 -11.47795 -11.22781 -11.11217 -10.85949 -10.81937 -10.58109 -10.53014 -10.32402 -10.13823 -9.94288 -9.48550 -9.41644 -9.33806 -9.21950 -8.82817 -8.15903 -7.87714 -7.27611 -5.81905 -3.82637 3.39403 3.47925 3.52746 4.56891 4.65228 4.83352 4.89668 4.98519 5.40491 5.48332 5.49056 5.53546 5.57838 5.61655 5.62894 5.65206 5.68916 5.77972 5.88275 5.91338 5.99474 6.08382 6.10359 6.15333 6.20058 6.24367 6.31268 6.38395 6.40329 6.45919 6.51413 6.56885 6.59992 6.66551 6.68526 6.75924 6.85200 6.85782 7.01650 7.06358 7.11148 7.26367 7.55120 7.72610 8.01873 8.09395 8.15084 8.68269 9.14298 9.78743 11.26642 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.007132 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.761713 B = 3925.088248 C = 4769.413895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.508 5.508 3 C 0.063 3.937 4 C -0.070 4.070 5 H 0.074 0.926 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.082 4.082 11 C -0.111 4.111 12 C -0.109 4.109 13 C 0.104 3.896 14 C 0.047 3.953 15 C -0.447 4.447 16 H 0.056 0.944 17 C 0.070 3.930 18 N -0.888 5.888 19 Si 0.879 3.121 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.291 1.291 23 C -0.223 4.223 24 C -0.146 4.146 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.005 0.995 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.066 0.934 43 H -0.001 1.001 44 H 0.254 0.746 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 13.034 -1.601 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.230 5.230 3 C -0.066 4.066 4 C -0.089 4.089 5 H 0.093 0.907 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.149 4.149 9 C -0.148 4.148 10 C -0.101 4.101 11 C -0.149 4.149 12 C -0.146 4.146 13 C -0.024 4.024 14 C 0.046 3.954 15 C -0.486 4.486 16 H 0.074 0.926 17 C -0.130 4.130 18 N -0.528 5.528 19 Si 0.708 3.292 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.218 1.218 23 C -0.260 4.260 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.303 12.684 -2.014 12.847 hybrid contribution 0.070 0.139 -0.132 0.204 sum -0.233 12.823 -2.146 13.004 Atomic orbital electron populations 1.22279 0.88756 1.02351 0.97842 1.61726 1.06115 1.10611 1.44597 1.22212 0.95883 0.90619 0.97865 1.21029 0.95475 0.94799 0.97580 0.90749 1.21376 1.01576 0.96444 0.93479 1.21123 0.94713 0.95849 0.99244 1.21516 0.96816 1.00637 0.95954 1.21490 0.96334 1.00495 0.96448 1.21043 0.94748 0.95842 0.98429 1.21538 0.99972 0.97895 0.95476 1.21490 0.99825 0.97089 0.96241 1.21712 0.98414 0.94737 0.87513 1.18873 0.95573 0.88171 0.92772 1.20182 0.96830 1.38228 0.93313 0.92589 1.24830 0.96649 0.95317 0.96226 1.70021 1.02046 1.48532 1.32154 0.86746 0.78204 0.77601 0.86662 1.19883 1.21150 1.21756 1.23124 0.92354 1.05006 1.05503 1.22443 0.94410 1.02791 0.98791 0.93112 0.90685 0.97698 0.96514 0.91864 0.91041 0.91849 0.91926 0.92128 0.92881 0.92726 0.92082 0.91950 0.92868 0.92102 0.92895 0.92284 0.91539 0.98305 0.93648 0.92541 0.90792 0.89222 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.35 60.06 0.56 1.21 16 2 N -0.51 -10.01 3.58 -242.91 -0.87 -10.88 16 3 C 0.06 1.05 3.56 -3.82 -0.01 1.03 16 4 C -0.07 -1.16 2.27 -90.65 -0.21 -1.37 16 5 H 0.07 1.46 6.64 -51.93 -0.34 1.11 16 6 C -0.09 -1.58 5.17 -26.73 -0.14 -1.72 16 7 C -0.09 -1.29 3.20 -90.62 -0.29 -1.58 16 8 C -0.11 -1.49 5.71 -26.73 -0.15 -1.65 16 9 C -0.11 -1.44 5.71 -26.73 -0.15 -1.59 16 10 C -0.08 -1.11 2.72 -90.65 -0.25 -1.36 16 11 C -0.11 -1.35 5.36 -26.73 -0.14 -1.49 16 12 C -0.11 -1.35 5.71 -26.73 -0.15 -1.50 16 13 C 0.10 2.27 4.87 -3.83 -0.02 2.25 16 14 C 0.05 1.13 1.14 -155.66 -0.18 0.96 16 15 C -0.45 -11.93 8.20 -34.44 -0.28 -12.21 16 16 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 17 C 0.07 1.91 5.41 -17.82 -0.10 1.82 16 18 N -0.89 -25.00 11.97 55.43 0.66 -24.34 16 19 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.22 -4.94 9.63 -26.73 -0.26 -5.20 16 24 C -0.15 -3.52 8.89 -26.73 -0.24 -3.76 16 25 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 26 H 0.07 1.46 7.30 -51.93 -0.38 1.08 16 27 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 28 H 0.02 0.28 8.00 -51.93 -0.42 -0.14 16 29 H 0.06 0.98 6.42 -51.93 -0.33 0.64 16 30 H 0.07 1.32 7.45 -51.92 -0.39 0.93 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.56 6.48 -51.92 -0.34 1.23 16 43 H 0.00 -0.02 7.82 -51.93 -0.41 -0.43 16 44 H 0.25 6.94 8.32 -40.82 -0.34 6.60 16 45 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 46 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.09 2.36 7.69 -51.93 -0.40 1.96 16 48 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -27.11 355.65 -11.08 -38.19 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -9.21 Total: 1.35 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -2.00 Total: -26.16 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.21 Total: -35.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.11 -11.08 -38.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400447048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.103 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds