Wall clock time and date at job start Mon Mar 30 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00136 * 2 1 4 4 C 1.53006 * 109.46924 * 199.81721 * 3 2 1 5 5 H 1.09000 * 109.46803 * 305.88155 * 4 3 2 6 6 C 1.52992 * 109.47484 * 65.88421 * 4 3 2 7 7 C 1.53004 * 109.47281 * 119.99866 * 6 4 3 8 8 C 1.52997 * 109.46863 * 59.99967 * 7 6 4 9 9 C 1.53002 * 109.47221 * 300.00144 * 8 7 6 10 10 C 1.52991 * 109.47192 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.46962 * 299.99655 * 10 9 8 12 12 C 1.53002 * 109.47166 * 300.00378 * 7 6 4 13 13 C 1.46900 * 110.99736 * 123.95346 * 2 1 3 14 14 C 1.52998 * 109.47395 * 71.87092 * 13 2 1 15 15 C 1.50697 * 115.55197 * 39.50712 * 14 13 2 16 16 H 1.08000 * 120.00571 * 272.86898 * 15 14 13 17 17 C 1.37882 * 120.00037 * 92.86178 * 15 14 13 18 18 N 1.31510 * 119.99682 * 4.37892 * 17 15 14 19 19 Si 1.86799 * 120.00012 * 184.37013 * 17 15 14 20 20 H 1.48493 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46645 * 120.00684 * 19 17 15 22 22 H 1.48504 * 109.46866 * 240.00183 * 19 17 15 23 23 C 1.52996 * 117.49665 * 253.80485 * 14 13 2 24 24 C 1.53003 * 117.49969 * 185.18109 * 14 13 2 25 25 H 1.09003 * 109.47376 * 54.89022 * 1 2 3 26 26 H 1.09003 * 109.47365 * 174.88879 * 1 2 3 27 27 H 1.09005 * 109.47277 * 294.88671 * 1 2 3 28 28 H 1.08999 * 109.46930 * 79.81585 * 3 2 1 29 29 H 1.09004 * 109.47177 * 319.81152 * 3 2 1 30 30 H 1.09008 * 109.47163 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47622 * 239.99851 * 6 4 3 32 32 H 1.08997 * 109.47366 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47149 * 60.00022 * 8 7 6 34 34 H 1.09002 * 109.47273 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47418 * 239.99751 * 9 8 7 36 36 H 1.09004 * 109.46672 * 119.99833 * 9 8 7 37 37 H 1.08997 * 109.47511 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.46950 * 300.00044 * 11 10 9 39 39 H 1.09000 * 109.46841 * 180.02562 * 11 10 9 40 40 H 1.08996 * 109.47531 * 179.97438 * 12 7 6 41 41 H 1.09005 * 109.47187 * 300.00021 * 12 7 6 42 42 H 1.09010 * 109.47180 * 191.86790 * 13 2 1 43 43 H 1.08996 * 109.47265 * 311.86367 * 13 2 1 44 44 H 0.96996 * 120.00332 * 184.99961 * 18 17 15 45 45 H 1.09001 * 117.50455 * 359.97438 * 23 14 13 46 46 H 1.09000 * 117.50230 * 145.02246 * 23 14 13 47 47 H 1.09002 * 117.49691 * 214.97561 * 24 14 13 48 48 H 1.09000 * 117.49879 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4452 1.3611 -0.4891 5 1 4.0257 0.6596 0.1101 6 6 3.4852 0.9327 -1.9572 7 6 4.1067 2.0499 -2.7978 8 6 5.5297 2.3253 -2.3079 9 6 5.4897 2.7537 -0.8397 10 6 4.0401 2.7634 -0.3505 11 6 3.2247 3.7478 -1.1914 12 6 3.2651 3.3202 -2.6599 13 6 1.9953 -0.7660 1.1376 14 6 1.7591 -2.2589 0.9004 15 6 1.9701 -2.7336 -0.5142 16 1 1.1592 -2.6876 -1.2260 17 6 3.1987 -3.2266 -0.8999 18 7 4.1602 -3.3631 -0.0131 19 14 3.4972 -3.7009 -2.6818 20 1 2.2653 -3.4532 -3.4730 21 1 4.6102 -2.8856 -3.2311 22 1 3.8538 -5.1405 -2.7578 23 6 0.6582 -2.9384 1.7171 24 6 2.1287 -3.2211 2.0311 25 1 -0.3634 0.5911 -0.8407 26 1 -0.3634 -1.0236 -0.0916 27 1 -0.3634 0.4325 0.9323 28 1 1.9560 1.7757 1.0115 29 1 1.3927 1.9920 -0.6632 30 1 2.4713 0.7369 -2.3064 31 1 4.0847 0.0278 -2.0555 32 1 4.1347 1.7449 -3.8439 33 1 6.1292 1.4203 -2.4061 34 1 5.9723 3.1215 -2.9065 35 1 5.9135 3.7531 -0.7411 36 1 6.0702 2.0521 -0.2406 37 1 4.0116 3.0681 0.6956 38 1 3.6481 4.7474 -1.0929 39 1 2.1920 3.7550 -0.8426 40 1 3.7080 4.1163 -3.2584 41 1 2.2512 3.1241 -3.0089 42 1 3.0645 -0.5788 1.2381 43 1 1.4853 -0.4579 2.0503 44 1 5.0454 -3.6407 -0.2963 45 1 0.1025 -2.3220 2.4238 46 1 0.0863 -3.7290 1.2314 47 1 2.5243 -4.1977 1.7517 48 1 2.5407 -2.7906 2.9438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400447048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:30 Heat of formation + Delta-G solvation = -4.790224 kcal Electronic energy + Delta-G solvation = -23701.573250 eV Core-core repulsion = 20755.413378 eV Total energy + Delta-G solvation = -2946.159872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47505 -39.09606 -36.74164 -33.78944 -32.67732 -31.96237 -31.62973 -28.46039 -27.51910 -26.86783 -23.70570 -23.34899 -22.81013 -22.65857 -21.53483 -20.76474 -17.94574 -17.31068 -17.27763 -16.76718 -16.55363 -16.40619 -15.86534 -15.60672 -15.09200 -14.77573 -14.20162 -13.96046 -13.51294 -13.30760 -13.12532 -12.92923 -12.88445 -12.87121 -12.80533 -12.79323 -12.71410 -12.54565 -12.40920 -12.31412 -12.22974 -11.97115 -11.75859 -11.30147 -11.12750 -10.85735 -10.63131 -10.57791 -10.51933 -10.21344 -9.79034 -8.79332 -7.94856 -5.98689 1.38896 1.43122 1.51910 2.51211 3.21899 3.34122 3.60283 3.71596 3.79750 3.84294 4.22507 4.33951 4.39102 4.47026 4.48267 4.51898 4.53711 4.56294 4.57008 4.62414 4.64580 4.70619 4.73985 4.76803 4.82436 4.84089 4.92029 4.98121 5.02929 5.12307 5.13929 5.17343 5.25780 5.27292 5.35357 5.37162 5.45381 5.53359 5.55678 5.66667 5.67502 5.68676 5.73109 5.78992 5.92256 6.41958 6.60466 6.67580 7.02316 7.64283 9.12934 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.007132 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.761713 B = 3925.088248 C = 4769.413895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.068 3.932 4 C -0.066 4.066 5 H 0.032 0.968 6 C -0.085 4.085 7 C -0.090 4.090 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.078 4.078 11 C -0.107 4.107 12 C -0.104 4.104 13 C 0.119 3.881 14 C 0.026 3.974 15 C -0.447 4.447 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.927 3.073 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.290 1.290 23 C -0.195 4.195 24 C -0.156 4.156 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.011 0.989 44 H 0.250 0.750 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 15.862 -2.020 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.253 5.253 3 C -0.060 4.060 4 C -0.085 4.085 5 H 0.050 0.950 6 C -0.123 4.123 7 C -0.108 4.108 8 C -0.149 4.149 9 C -0.148 4.148 10 C -0.097 4.097 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.009 4.009 14 C 0.025 3.975 15 C -0.486 4.486 16 H 0.062 0.938 17 C -0.169 4.169 18 N -0.554 5.554 19 Si 0.755 3.245 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.217 1.217 23 C -0.233 4.233 24 C -0.194 4.194 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.367 15.512 -2.439 15.762 hybrid contribution 0.375 -0.795 0.001 0.879 sum -0.992 14.716 -2.438 14.950 Atomic orbital electron populations 1.22248 0.87370 1.01665 0.99564 1.61627 1.07519 1.12340 1.43800 1.22224 0.95779 0.89212 0.98736 1.20949 0.95371 0.96054 0.96097 0.94954 1.21256 1.00020 0.96046 0.94951 1.21110 0.95470 0.95833 0.98425 1.21521 0.96078 1.00609 0.96698 1.21506 0.95983 1.01484 0.95786 1.21025 0.95138 0.94072 0.99483 1.21535 1.00011 0.98283 0.94593 1.21473 0.99527 0.96224 0.96963 1.21396 0.97079 0.93539 0.88884 1.19003 0.97202 0.89605 0.91674 1.20324 0.96274 1.37493 0.94470 0.93760 1.25355 0.96751 0.95810 0.98955 1.70119 1.02127 1.49812 1.33344 0.85980 0.77967 0.77060 0.83456 1.19434 1.21370 1.21688 1.23074 0.91278 1.04293 1.04606 1.22314 0.96240 1.01541 0.99295 0.91019 0.92713 0.96090 0.95711 0.89802 0.92440 0.96444 0.91965 0.94218 0.90340 0.90051 0.93859 0.91249 0.90486 0.91604 0.90652 0.92168 0.94199 0.97115 0.94031 0.89838 0.91045 0.92086 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 9.35 127.69 1.19 2.54 16 2 N -0.53 -20.66 3.58 -922.43 -3.30 -23.96 16 3 C 0.07 2.19 3.56 86.31 0.31 2.50 16 4 C -0.07 -2.20 2.27 -10.81 -0.02 -2.22 16 5 H 0.03 1.34 6.64 -2.39 -0.02 1.33 16 6 C -0.08 -3.02 5.17 30.59 0.16 -2.86 16 7 C -0.09 -2.45 3.20 -10.79 -0.03 -2.49 16 8 C -0.11 -2.85 5.71 30.59 0.17 -2.67 16 9 C -0.11 -2.71 5.71 30.59 0.17 -2.54 16 10 C -0.08 -1.99 2.72 -10.81 -0.03 -2.02 16 11 C -0.11 -2.18 5.36 30.60 0.16 -2.02 16 12 C -0.10 -2.23 5.71 30.60 0.17 -2.06 16 13 C 0.12 5.24 4.87 86.30 0.42 5.66 16 14 C 0.03 1.27 1.14 -52.93 -0.06 1.21 16 15 C -0.45 -24.40 8.20 25.60 0.21 -24.19 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 17 C 0.03 1.63 5.41 84.66 0.46 2.09 16 18 N -0.91 -53.42 11.97 21.45 0.26 -53.16 16 19 Si 0.93 45.50 29.54 68.60 2.03 47.52 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 C -0.20 -8.51 9.63 30.59 0.29 -8.21 16 24 C -0.16 -7.60 8.89 30.60 0.27 -7.33 16 25 H 0.07 2.10 7.95 -2.39 -0.02 2.08 16 26 H 0.05 2.06 7.30 -2.39 -0.02 2.04 16 27 H 0.02 0.64 8.09 -2.38 -0.02 0.62 16 28 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 29 H 0.08 2.36 6.42 -2.39 -0.02 2.34 16 30 H 0.06 2.15 7.45 -2.38 -0.02 2.13 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.30 6.56 -2.39 -0.02 1.29 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.04 1.94 6.48 -2.38 -0.02 1.93 16 43 H 0.01 0.45 7.82 -2.39 -0.02 0.43 16 44 H 0.25 14.27 8.32 -92.71 -0.77 13.50 16 45 H 0.08 3.19 8.08 -2.39 -0.02 3.17 16 46 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.06 3.31 7.69 -2.39 -0.02 3.29 16 48 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -60.17 355.65 3.72 -56.45 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 3.85 Total: -44.62 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.04 Total: -77.12 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -60.17 3.72 -56.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400447048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.658 kcal (2) G-P(sol) polarization free energy of solvation -60.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds