Wall clock time and date at job start Mon Mar 30 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29444 * 117.96468 * 2 1 4 4 C 1.50065 * 124.07535 * 179.53048 * 3 2 1 5 5 H 1.08997 * 109.35555 * 137.22403 * 4 3 2 6 6 C 1.52994 * 109.35797 * 256.94966 * 4 3 2 7 7 C 1.53041 * 110.13856 * 17.17374 * 4 3 2 8 8 C 1.53401 * 108.42530 * 310.53157 * 7 4 3 9 9 H 1.08995 * 109.81404 * 307.66401 * 8 7 4 10 10 C 1.52997 * 109.63844 * 187.13702 * 8 7 4 11 11 N 1.46505 * 109.46618 * 177.04564 * 10 8 7 12 12 C 1.36929 * 119.99871 * 276.01185 * 11 10 8 13 13 H 1.08005 * 119.99660 * 142.84460 * 12 11 10 14 14 C 1.38807 * 120.00407 * 322.84642 * 12 11 10 15 15 N 1.31619 * 120.00110 * 157.71513 * 14 12 11 16 16 Si 1.86801 * 119.99778 * 337.71184 * 14 12 11 17 17 H 1.48502 * 109.46990 * 95.23149 * 16 14 12 18 18 H 1.48500 * 109.47203 * 215.22749 * 16 14 12 19 19 H 1.48493 * 109.47173 * 335.22915 * 16 14 12 20 20 C 1.46498 * 119.99802 * 96.01701 * 11 10 8 21 21 C 1.54966 * 110.92548 * 120.02761 * 20 11 10 22 22 C 1.54264 * 104.16059 * 156.29402 * 21 20 11 23 23 C 1.53875 * 106.64285 * 336.44656 * 22 21 20 24 24 C 1.54264 * 106.59727 * 359.97413 * 23 22 21 25 25 C 1.50063 * 117.96123 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47061 * 269.97957 * 1 2 3 27 27 H 1.09002 * 109.46698 * 29.97487 * 1 2 3 28 28 H 1.08996 * 109.47429 * 149.97246 * 1 2 3 29 29 H 1.08005 * 117.96010 * 359.55495 * 3 2 1 30 30 H 1.08996 * 109.47644 * 60.00329 * 6 4 3 31 31 H 1.09007 * 109.46816 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47126 * 299.99748 * 6 4 3 33 33 H 1.09001 * 109.63546 * 190.85749 * 7 4 3 34 34 H 1.08997 * 109.66208 * 70.22108 * 7 4 3 35 35 H 1.08997 * 109.47760 * 57.04551 * 10 8 7 36 36 H 1.09003 * 109.46847 * 297.04164 * 10 8 7 37 37 H 0.97000 * 119.99918 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.67485 * 356.72013 * 20 11 10 39 39 H 1.09001 * 110.47593 * 37.64122 * 21 20 11 40 40 H 1.08997 * 110.52890 * 274.97441 * 21 20 11 41 41 H 1.09002 * 110.03501 * 217.14032 * 22 21 20 42 42 H 1.08996 * 110.03603 * 95.75404 * 22 21 20 43 43 H 1.08997 * 110.03644 * 119.26017 * 23 22 21 44 44 H 1.09000 * 110.03331 * 240.64934 * 23 22 21 45 45 H 1.08999 * 110.48661 * 142.28683 * 24 23 22 46 46 H 1.08999 * 110.49315 * 264.80194 * 24 23 22 47 47 H 1.09001 * 109.36440 * 76.89046 * 25 2 1 48 48 H 1.09008 * 109.35791 * 317.31493 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1141 1.1433 0.0000 4 6 3.6061 1.3031 0.0102 5 1 3.8900 2.0894 -0.6892 6 6 4.0655 1.6865 1.4182 7 6 4.2792 -0.0074 -0.4042 8 6 3.6705 -1.1476 0.4221 9 1 3.7174 -0.9010 1.4828 10 6 4.4433 -2.4418 0.1603 11 7 3.9041 -3.5115 1.0036 12 6 4.3348 -3.6471 2.2963 13 1 3.6400 -3.9418 3.0689 14 6 5.6644 -3.4059 2.6138 15 7 6.0014 -3.1026 3.8495 16 14 6.9754 -3.5120 1.2874 17 1 7.2346 -2.1569 0.7381 18 1 8.2273 -4.0571 1.8712 19 1 6.5067 -4.4062 0.1985 20 6 2.9042 -4.4362 0.4638 21 6 3.4190 -5.8971 0.5104 22 6 2.1338 -6.7502 0.5151 23 6 1.0111 -5.8527 1.0644 24 6 1.6528 -4.4848 1.3754 25 6 2.2107 -1.3255 -0.0006 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5142 29 1 1.5089 2.0379 -0.0074 30 1 3.7782 0.9036 2.1201 31 1 5.1492 1.8035 1.4276 32 1 3.5965 2.6262 1.7101 33 1 5.3502 0.0538 -0.2109 34 1 4.1050 -0.1899 -1.4645 35 1 5.4967 -2.2899 0.3953 36 1 4.3414 -2.7198 -0.8888 37 1 6.9305 -2.9344 4.0714 38 1 2.6304 -4.1560 -0.5533 39 1 3.9947 -6.0696 1.4197 40 1 4.0208 -6.1185 -0.3710 41 1 2.2652 -7.6199 1.1589 42 1 1.8939 -7.0696 -0.4991 43 1 0.2268 -5.7358 0.3165 44 1 0.5972 -6.2872 1.9743 45 1 0.9667 -3.6758 1.1249 46 1 1.9407 -4.4283 2.4252 47 1 2.1741 -1.7536 -1.0023 48 1 1.7123 -1.9994 0.6964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428274742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:30 Heat of formation + Delta-G solvation = 5.308618 kcal Electronic energy + Delta-G solvation = -23536.451519 eV Core-core repulsion = 20590.729566 eV Total energy + Delta-G solvation = -2945.721954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.11320 -37.62636 -34.75695 -33.14963 -31.97104 -30.69876 -28.00170 -27.26082 -26.57603 -26.09710 -25.27097 -22.75737 -21.07524 -20.12343 -19.56817 -19.23683 -16.96352 -16.29217 -15.47258 -15.30450 -15.05109 -14.49916 -14.17994 -13.79319 -13.42389 -13.23588 -12.88537 -12.69432 -12.65276 -12.37548 -12.29998 -12.16635 -12.00595 -11.46611 -11.31622 -11.09945 -11.03256 -10.87566 -10.73085 -10.62373 -10.43677 -10.38463 -10.17953 -9.90575 -9.81818 -9.70128 -9.66627 -9.40767 -9.23027 -8.40707 -8.38183 -6.69550 -5.93451 -3.32803 2.58783 3.34611 3.50571 3.55860 4.57718 4.89737 4.99828 5.13568 5.27882 5.34276 5.35553 5.41517 5.46576 5.60879 5.62371 5.69247 5.72824 5.83346 5.98349 6.03022 6.05786 6.07085 6.12501 6.14473 6.19534 6.21536 6.27784 6.30214 6.31632 6.35302 6.41818 6.48721 6.51105 6.53702 6.61822 6.65754 6.70318 6.74955 6.88418 7.01216 7.08259 7.12701 7.20065 7.27691 7.40655 8.13755 8.46625 9.08677 9.79815 10.21168 11.22212 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.008478 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.372076 B = 3302.054548 C = 4786.486692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C -0.164 4.164 4 C -0.054 4.054 5 H 0.065 0.935 6 C -0.142 4.142 7 C -0.113 4.113 8 C -0.101 4.101 9 H 0.085 0.915 10 C 0.145 3.855 11 N -0.596 5.596 12 C -0.255 4.255 13 H 0.081 0.919 14 C 0.037 3.963 15 N -0.901 5.901 16 Si 0.874 3.126 17 H -0.287 1.287 18 H -0.306 1.306 19 H -0.270 1.270 20 C 0.176 3.824 21 C -0.138 4.138 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.072 4.072 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 3.757 -8.950 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.115 4.115 3 C -0.182 4.182 4 C -0.073 4.073 5 H 0.083 0.917 6 C -0.199 4.199 7 C -0.151 4.151 8 C -0.122 4.122 9 H 0.103 0.897 10 C 0.019 3.981 11 N -0.316 5.316 12 C -0.384 4.384 13 H 0.098 0.902 14 C -0.163 4.163 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.215 1.215 18 H -0.234 1.234 19 H -0.195 1.195 20 C 0.068 3.932 21 C -0.178 4.178 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.174 4.174 25 C -0.108 4.108 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.343 3.784 -8.822 12.718 hybrid contribution 0.838 0.017 -0.641 1.055 sum -7.505 3.800 -9.463 12.661 Atomic orbital electron populations 1.20932 0.93366 1.01600 1.01718 1.21060 0.95147 0.95804 0.99475 1.21762 0.95673 0.96660 1.04090 1.19918 0.92518 0.97624 0.97203 0.91680 1.21815 1.00518 1.01102 0.96485 1.21714 0.99477 0.94596 0.99308 1.21759 0.94039 0.95451 1.00904 0.89707 1.21208 0.96346 0.87600 0.92931 1.44117 1.47377 1.28690 1.11428 1.18638 0.92298 1.44197 0.83253 0.90195 1.25410 0.97079 0.98633 0.95170 1.69868 1.17734 1.47953 1.18734 0.86980 0.81801 0.77598 0.83118 1.21515 1.23436 1.19535 1.21358 0.88900 0.88664 0.94230 1.22801 0.96202 0.96770 1.01987 1.22047 0.96179 0.98124 0.99546 1.22053 0.97362 0.96795 0.99697 1.22778 0.97417 0.94675 1.02570 1.20452 0.95812 0.93663 1.00911 0.91826 0.92672 0.92227 0.88940 0.91615 0.92837 0.93452 0.92155 0.92640 0.93536 0.94437 0.92919 0.92669 0.90198 0.93470 0.92833 0.93129 0.93063 0.92814 0.92965 0.90405 0.92250 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.87 36.01 0.36 -1.12 16 2 C -0.11 -1.70 5.84 -100.94 -0.59 -2.29 16 3 C -0.16 -2.36 8.61 -35.90 -0.31 -2.67 16 4 C -0.05 -0.80 3.12 -92.06 -0.29 -1.08 16 5 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -2.14 8.97 37.15 0.33 -1.81 16 7 C -0.11 -1.85 4.74 -26.50 -0.13 -1.98 16 8 C -0.10 -1.89 2.37 -90.41 -0.21 -2.10 16 9 H 0.08 1.86 6.45 -51.93 -0.34 1.52 16 10 C 0.14 3.03 4.14 -4.04 -0.02 3.01 16 11 N -0.60 -13.26 1.91 -163.36 -0.31 -13.57 16 12 C -0.26 -6.72 8.48 -15.06 -0.13 -6.84 16 13 H 0.08 2.29 6.55 -52.48 -0.34 1.95 16 14 C 0.04 1.04 5.33 -17.43 -0.09 0.94 16 15 N -0.90 -26.93 13.97 55.49 0.78 -26.16 16 16 Si 0.87 22.09 25.02 -169.99 -4.25 17.83 16 17 H -0.29 -7.09 6.68 56.52 0.38 -6.71 16 18 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.18 3.35 2.51 -65.89 -0.17 3.19 16 21 C -0.14 -2.58 6.40 -25.03 -0.16 -2.74 16 22 C -0.12 -1.86 6.80 -25.61 -0.17 -2.03 16 23 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 24 C -0.14 -2.39 5.89 -25.07 -0.15 -2.54 16 25 C -0.07 -1.18 4.40 -28.18 -0.12 -1.31 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.60 7.89 -51.93 -0.41 0.19 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.09 1.20 7.80 -52.48 -0.41 0.79 16 30 H 0.06 1.14 6.59 -51.93 -0.34 0.80 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 35 H 0.05 1.09 2.96 -51.93 -0.15 0.93 16 36 H 0.04 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 39 H 0.08 1.72 7.32 -51.93 -0.38 1.34 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.87 6.53 -51.93 -0.34 0.53 16 46 H 0.08 1.59 6.28 -51.93 -0.33 1.26 16 47 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 48 H 0.08 1.45 5.41 -51.92 -0.28 1.17 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -27.87 349.48 -9.32 -37.19 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.78 Total: 2.79 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.02 Total: -23.36 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.46 Total: -39.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.25 Total: 17.83 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.87 -9.32 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428274742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.503 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds