Wall clock time and date at job start Mon Mar 30 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29444 * 117.96468 * 2 1 4 4 C 1.50065 * 124.07535 * 179.53048 * 3 2 1 5 5 H 1.08997 * 109.35555 * 137.22403 * 4 3 2 6 6 C 1.52994 * 109.35797 * 256.94966 * 4 3 2 7 7 C 1.53041 * 110.13856 * 17.17374 * 4 3 2 8 8 C 1.53401 * 108.42530 * 310.53157 * 7 4 3 9 9 H 1.08995 * 109.81404 * 307.66401 * 8 7 4 10 10 C 1.52997 * 109.63844 * 187.13702 * 8 7 4 11 11 N 1.46505 * 109.46618 * 177.04564 * 10 8 7 12 12 C 1.36929 * 119.99871 * 276.01185 * 11 10 8 13 13 H 1.08005 * 119.99660 * 142.84460 * 12 11 10 14 14 C 1.38807 * 120.00407 * 322.84642 * 12 11 10 15 15 N 1.31619 * 120.00110 * 157.71513 * 14 12 11 16 16 Si 1.86801 * 119.99778 * 337.71184 * 14 12 11 17 17 H 1.48502 * 109.46990 * 95.23149 * 16 14 12 18 18 H 1.48500 * 109.47203 * 215.22749 * 16 14 12 19 19 H 1.48493 * 109.47173 * 335.22915 * 16 14 12 20 20 C 1.46498 * 119.99802 * 96.01701 * 11 10 8 21 21 C 1.54966 * 110.92548 * 120.02761 * 20 11 10 22 22 C 1.54264 * 104.16059 * 156.29402 * 21 20 11 23 23 C 1.53875 * 106.64285 * 336.44656 * 22 21 20 24 24 C 1.54264 * 106.59727 * 359.97413 * 23 22 21 25 25 C 1.50063 * 117.96123 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47061 * 269.97957 * 1 2 3 27 27 H 1.09002 * 109.46698 * 29.97487 * 1 2 3 28 28 H 1.08996 * 109.47429 * 149.97246 * 1 2 3 29 29 H 1.08005 * 117.96010 * 359.55495 * 3 2 1 30 30 H 1.08996 * 109.47644 * 60.00329 * 6 4 3 31 31 H 1.09007 * 109.46816 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47126 * 299.99748 * 6 4 3 33 33 H 1.09001 * 109.63546 * 190.85749 * 7 4 3 34 34 H 1.08997 * 109.66208 * 70.22108 * 7 4 3 35 35 H 1.08997 * 109.47760 * 57.04551 * 10 8 7 36 36 H 1.09003 * 109.46847 * 297.04164 * 10 8 7 37 37 H 0.97000 * 119.99918 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.67485 * 356.72013 * 20 11 10 39 39 H 1.09001 * 110.47593 * 37.64122 * 21 20 11 40 40 H 1.08997 * 110.52890 * 274.97441 * 21 20 11 41 41 H 1.09002 * 110.03501 * 217.14032 * 22 21 20 42 42 H 1.08996 * 110.03603 * 95.75404 * 22 21 20 43 43 H 1.08997 * 110.03644 * 119.26017 * 23 22 21 44 44 H 1.09000 * 110.03331 * 240.64934 * 23 22 21 45 45 H 1.08999 * 110.48661 * 142.28683 * 24 23 22 46 46 H 1.08999 * 110.49315 * 264.80194 * 24 23 22 47 47 H 1.09001 * 109.36440 * 76.89046 * 25 2 1 48 48 H 1.09008 * 109.35791 * 317.31493 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1141 1.1433 0.0000 4 6 3.6061 1.3031 0.0102 5 1 3.8900 2.0894 -0.6892 6 6 4.0655 1.6865 1.4182 7 6 4.2792 -0.0074 -0.4042 8 6 3.6705 -1.1476 0.4221 9 1 3.7174 -0.9010 1.4828 10 6 4.4433 -2.4418 0.1603 11 7 3.9041 -3.5115 1.0036 12 6 4.3348 -3.6471 2.2963 13 1 3.6400 -3.9418 3.0689 14 6 5.6644 -3.4059 2.6138 15 7 6.0014 -3.1026 3.8495 16 14 6.9754 -3.5120 1.2874 17 1 7.2346 -2.1569 0.7381 18 1 8.2273 -4.0571 1.8712 19 1 6.5067 -4.4062 0.1985 20 6 2.9042 -4.4362 0.4638 21 6 3.4190 -5.8971 0.5104 22 6 2.1338 -6.7502 0.5151 23 6 1.0111 -5.8527 1.0644 24 6 1.6528 -4.4848 1.3754 25 6 2.2107 -1.3255 -0.0006 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5142 29 1 1.5089 2.0379 -0.0074 30 1 3.7782 0.9036 2.1201 31 1 5.1492 1.8035 1.4276 32 1 3.5965 2.6262 1.7101 33 1 5.3502 0.0538 -0.2109 34 1 4.1050 -0.1899 -1.4645 35 1 5.4967 -2.2899 0.3953 36 1 4.3414 -2.7198 -0.8888 37 1 6.9305 -2.9344 4.0714 38 1 2.6304 -4.1560 -0.5533 39 1 3.9947 -6.0696 1.4197 40 1 4.0208 -6.1185 -0.3710 41 1 2.2652 -7.6199 1.1589 42 1 1.8939 -7.0696 -0.4991 43 1 0.2268 -5.7358 0.3165 44 1 0.5972 -6.2872 1.9743 45 1 0.9667 -3.6758 1.1249 46 1 1.9407 -4.4283 2.4252 47 1 2.1741 -1.7536 -1.0023 48 1 1.7123 -1.9994 0.6964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428274742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:30 Heat of formation + Delta-G solvation = -7.347474 kcal Electronic energy + Delta-G solvation = -23537.000329 eV Core-core repulsion = 20590.729566 eV Total energy + Delta-G solvation = -2946.270763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48266 -39.07681 -36.35742 -34.32080 -33.85982 -32.33816 -29.41974 -28.72631 -27.74668 -27.37035 -27.02633 -24.43073 -22.45708 -21.52477 -20.95544 -20.84125 -18.47551 -17.99556 -17.15985 -16.94342 -16.37106 -16.00059 -15.56978 -15.15038 -14.72133 -14.61911 -14.50116 -14.24778 -14.16845 -13.85121 -13.73257 -13.47697 -13.29422 -12.95850 -12.76293 -12.65940 -12.44397 -12.33660 -12.21255 -12.12923 -11.93871 -11.87292 -11.75005 -11.53656 -11.28049 -11.16661 -11.05272 -10.94265 -10.87582 -10.47717 -9.52365 -8.59586 -8.12413 -5.46055 1.29016 1.39681 1.46036 1.49879 2.45866 3.10662 3.36777 3.80465 3.88844 3.99496 4.01751 4.05150 4.23265 4.29265 4.37507 4.45074 4.53115 4.63283 4.67453 4.72522 4.75038 4.76698 4.81638 4.88766 4.89961 4.93030 4.96869 4.97236 5.00417 5.05704 5.08212 5.11740 5.19071 5.22078 5.24643 5.28660 5.36779 5.38273 5.50249 5.58226 5.63143 5.66259 5.73724 5.92538 6.05543 6.25831 6.29438 7.11023 7.76428 8.17122 9.07842 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.008478 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.372076 B = 3302.054548 C = 4786.486692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.129 4.129 3 C -0.164 4.164 4 C -0.054 4.054 5 H 0.090 0.910 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.094 4.094 9 H 0.041 0.959 10 C 0.138 3.862 11 N -0.603 5.603 12 C -0.224 4.224 13 H 0.045 0.955 14 C -0.020 4.020 15 N -0.952 5.952 16 Si 0.932 3.068 17 H -0.280 1.280 18 H -0.318 1.318 19 H -0.261 1.261 20 C 0.169 3.831 21 C -0.140 4.140 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.064 4.064 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 4.236 -12.292 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.129 4.129 3 C -0.182 4.182 4 C -0.072 4.072 5 H 0.108 0.892 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.114 4.114 9 H 0.060 0.940 10 C 0.014 3.986 11 N -0.324 5.324 12 C -0.354 4.354 13 H 0.062 0.938 14 C -0.215 4.215 15 N -0.598 5.598 16 Si 0.763 3.237 17 H -0.208 1.208 18 H -0.248 1.248 19 H -0.185 1.185 20 C 0.063 3.937 21 C -0.180 4.180 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.170 4.170 25 C -0.101 4.101 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.392 4.255 -12.209 16.588 hybrid contribution 1.390 -0.134 0.424 1.459 sum -9.002 4.121 -11.785 15.392 Atomic orbital electron populations 1.20912 0.91339 1.02957 1.01960 1.21174 0.96673 0.94919 1.00121 1.21933 0.95449 0.97417 1.03382 1.19959 0.92929 0.97259 0.97074 0.89154 1.21779 1.00584 1.00929 0.96393 1.21700 0.98696 0.94650 0.99840 1.21554 0.95839 0.95182 0.98871 0.94002 1.21311 0.95206 0.88322 0.93792 1.44206 1.47811 1.30192 1.10200 1.18445 0.91317 1.41071 0.84554 0.93790 1.25911 0.99033 0.99899 0.96688 1.69993 1.17686 1.51248 1.20826 0.86013 0.78963 0.77817 0.80862 1.20767 1.24786 1.18542 1.21611 0.88323 0.88221 0.95524 1.22756 0.97674 0.97322 1.00212 1.22015 0.94114 0.97589 1.01414 1.22033 0.97731 0.94580 1.00857 1.22661 0.97298 0.97218 0.99781 1.20323 0.93947 0.94820 1.00982 0.92076 0.90771 0.91487 0.86753 0.94953 0.93091 0.91363 0.93448 0.90746 0.96018 0.91875 0.93384 0.90138 0.94159 0.92909 0.92441 0.90304 0.90109 0.92373 0.91793 0.94396 0.90887 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.87 71.24 0.70 -1.78 16 2 C -0.13 -3.51 5.84 -15.10 -0.09 -3.60 16 3 C -0.16 -4.26 8.61 27.04 0.23 -4.03 16 4 C -0.05 -1.47 3.12 -11.73 -0.04 -1.51 16 5 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 6 C -0.14 -4.15 8.97 71.98 0.65 -3.51 16 7 C -0.11 -3.47 4.74 30.74 0.15 -3.33 16 8 C -0.09 -3.49 2.37 -10.66 -0.03 -3.51 16 9 H 0.04 1.91 6.45 -2.39 -0.02 1.90 16 10 C 0.14 5.73 4.14 86.38 0.36 6.09 16 11 N -0.60 -27.11 1.91 -670.74 -1.28 -28.39 16 12 C -0.22 -12.34 8.48 84.03 0.71 -11.63 16 13 H 0.04 2.73 6.55 -2.91 -0.02 2.71 16 14 C -0.02 -1.17 5.33 84.86 0.45 -0.71 16 15 N -0.95 -60.19 13.97 21.65 0.30 -59.89 16 16 Si 0.93 47.36 25.02 68.60 1.72 49.07 16 17 H -0.28 -13.71 6.68 99.48 0.66 -13.05 16 18 H -0.32 -16.66 7.11 99.48 0.71 -15.95 16 19 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.17 6.26 2.51 46.31 0.12 6.38 16 21 C -0.14 -5.10 6.40 31.70 0.20 -4.90 16 22 C -0.11 -3.17 6.80 31.32 0.21 -2.96 16 23 C -0.11 -3.12 6.80 31.32 0.21 -2.91 16 24 C -0.13 -4.52 5.89 31.67 0.19 -4.34 16 25 C -0.06 -2.01 4.40 29.65 0.13 -1.88 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.32 7.89 -2.39 -0.02 1.30 16 28 H 0.07 1.33 8.08 -2.39 -0.02 1.32 16 29 H 0.11 2.51 7.80 -2.91 -0.02 2.48 16 30 H 0.03 1.16 6.59 -2.39 -0.02 1.14 16 31 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 34 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 35 H 0.02 1.02 2.96 -2.39 -0.01 1.01 16 36 H 0.06 2.28 7.84 -2.39 -0.02 2.26 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.08 2.61 7.82 -2.39 -0.02 2.59 16 39 H 0.04 1.77 7.32 -2.39 -0.02 1.75 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.04 6.53 -2.39 -0.02 2.02 16 46 H 0.04 1.61 6.28 -2.39 -0.01 1.59 16 47 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 48 H 0.07 2.26 5.41 -2.38 -0.01 2.25 16 Total: -1.00 -64.18 349.48 5.76 -58.42 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.86 Total: 18.90 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 4.16 Total: -38.12 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -0.98 Total: -88.27 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.72 Total: 49.07 kcal Total: -64.18 5.76 -58.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428274742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds