Wall clock time and date at job start Mon Mar 30 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29173 * 118.04588 * 2 1 4 4 C 1.50062 * 124.28403 * 180.42940 * 3 2 1 5 5 H 1.08997 * 109.35909 * 103.08635 * 4 3 2 6 6 C 1.52999 * 109.35949 * 222.81124 * 4 3 2 7 7 C 1.53027 * 110.03623 * 342.95191 * 4 3 2 8 8 C 1.53388 * 108.43911 * 49.36602 * 7 4 3 9 9 H 1.08999 * 109.64510 * 52.24969 * 8 7 4 10 10 C 1.52999 * 109.64355 * 172.88150 * 8 7 4 11 11 N 1.46503 * 109.47509 * 185.02334 * 10 8 7 12 12 C 1.36938 * 119.99600 * 96.28453 * 11 10 8 13 13 H 1.07997 * 120.00321 * 226.58825 * 12 11 10 14 14 C 1.38811 * 119.99816 * 46.59891 * 12 11 10 15 15 N 1.31624 * 119.99961 * 209.32077 * 14 12 11 16 16 Si 1.86803 * 120.00070 * 29.32274 * 14 12 11 17 17 H 1.48494 * 109.47168 * 95.80553 * 16 14 12 18 18 H 1.48504 * 109.46835 * 215.80494 * 16 14 12 19 19 H 1.48496 * 109.47099 * 335.80301 * 16 14 12 20 20 C 1.46496 * 120.00189 * 276.29581 * 11 10 8 21 21 C 1.54269 * 110.03018 * 237.90748 * 20 11 10 22 22 C 1.54966 * 104.15820 * 217.13658 * 21 20 11 23 23 C 1.54883 * 102.78024 * 37.88475 * 22 21 20 24 24 C 1.53866 * 110.03740 * 120.68500 * 20 11 10 25 25 C 1.50066 * 117.96015 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46954 * 269.96321 * 1 2 3 27 27 H 1.08999 * 109.46876 * 29.96579 * 1 2 3 28 28 H 1.09003 * 109.47064 * 149.96247 * 1 2 3 29 29 H 1.08005 * 117.75364 * 0.46209 * 3 2 1 30 30 H 1.09000 * 109.47383 * 180.27680 * 6 4 3 31 31 H 1.08994 * 109.46882 * 300.27389 * 6 4 3 32 32 H 1.09000 * 109.46786 * 60.27853 * 6 4 3 33 33 H 1.08996 * 109.64320 * 169.05380 * 7 4 3 34 34 H 1.09001 * 109.63895 * 289.46894 * 7 4 3 35 35 H 1.08997 * 109.47089 * 305.02620 * 10 8 7 36 36 H 1.09007 * 109.46919 * 65.02825 * 10 8 7 37 37 H 0.97000 * 119.99933 * 179.97438 * 15 14 12 38 38 H 1.08998 * 110.01698 * 359.28718 * 20 11 10 39 39 H 1.09009 * 110.48333 * 335.77494 * 21 20 11 40 40 H 1.08997 * 110.49154 * 98.42277 * 21 20 11 41 41 H 1.09002 * 110.71481 * 279.56537 * 22 21 20 42 42 H 1.09004 * 110.92337 * 156.28960 * 22 21 20 43 43 H 1.08994 * 110.48879 * 203.41141 * 23 22 21 44 44 H 1.08998 * 110.60445 * 80.81504 * 23 22 21 45 45 H 1.08998 * 110.03600 * 238.56861 * 24 20 11 46 46 H 1.09005 * 110.03001 * 359.94964 * 24 20 11 47 47 H 1.09001 * 109.36354 * 42.65980 * 25 2 1 48 48 H 1.09004 * 109.24505 * 283.00462 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1144 1.1400 0.0000 4 6 3.6061 1.3031 -0.0093 5 1 3.9333 1.5774 -1.0122 6 6 4.0017 2.4074 0.9730 7 6 4.2794 -0.0077 0.4031 8 6 3.6704 -1.1471 -0.4238 9 1 3.7167 -0.8960 -1.4835 10 6 4.4432 -2.4416 -0.1634 11 7 3.9367 -3.4982 -1.0428 12 6 4.5739 -3.7698 -2.2241 13 1 4.0013 -3.8855 -3.1324 14 6 5.9559 -3.8967 -2.2539 15 7 6.6220 -3.5849 -3.3455 16 14 6.8704 -4.5099 -0.7449 17 1 7.1054 -5.9710 -0.8683 18 1 8.1737 -3.8064 -0.6360 19 1 6.0592 -4.2398 0.4692 20 6 2.7484 -4.2640 -0.6586 21 6 3.0861 -5.7680 -0.5971 22 6 1.8125 -6.4649 -1.1391 23 6 1.3579 -5.5136 -2.2737 24 6 1.6498 -4.1021 -1.7237 25 6 2.2106 -1.3255 -0.0006 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3633 -0.8897 -0.5144 29 1 1.5073 2.0333 0.0077 30 1 5.0846 2.5308 0.9641 31 1 3.5270 3.3432 0.6780 32 1 3.6753 2.1349 1.9766 33 1 5.3502 0.0537 0.2096 34 1 4.1087 -0.1892 1.4643 35 1 5.5023 -2.2790 -0.3635 36 1 4.3116 -2.7404 0.8766 37 1 7.5878 -3.6732 -3.3662 38 1 2.3824 -3.9237 0.3101 39 1 3.9431 -5.9928 -1.2321 40 1 3.2810 -6.0736 0.4308 41 1 1.0501 -6.5325 -0.3630 42 1 2.0478 -7.4530 -1.5346 43 1 0.2923 -5.6341 -2.4686 44 1 1.9338 -5.6960 -3.1810 45 1 0.7503 -3.6841 -1.2718 46 1 2.0005 -3.4530 -2.5261 47 1 1.7121 -1.9990 -0.6978 48 1 2.1745 -1.7519 1.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428274744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:32 Heat of formation + Delta-G solvation = -11.666535 kcal Electronic energy + Delta-G solvation = -23385.368662 eV Core-core repulsion = 20438.910610 eV Total energy + Delta-G solvation = -2946.458051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.44020 -39.05609 -36.19058 -34.32851 -34.03826 -32.40523 -29.41795 -28.77956 -27.77057 -27.18255 -26.98327 -24.15561 -22.04976 -21.63786 -21.30375 -20.66200 -18.55915 -18.17147 -16.95674 -16.77711 -16.44800 -15.89541 -15.37561 -15.28053 -14.93894 -14.66639 -14.47443 -14.23601 -14.02101 -13.91757 -13.59869 -13.25977 -13.13714 -12.91618 -12.72041 -12.54770 -12.46352 -12.26774 -12.21777 -12.14786 -11.81120 -11.79244 -11.71460 -11.58712 -11.36067 -11.33680 -11.23511 -10.92959 -10.86915 -10.49113 -9.52018 -8.40023 -8.19189 -5.54490 1.33777 1.41950 1.47064 1.52485 2.48010 3.04380 3.45019 3.80842 3.88951 3.97611 4.01201 4.10025 4.26217 4.30047 4.37820 4.49171 4.57081 4.68509 4.72526 4.75096 4.76201 4.78701 4.85785 4.92311 4.93160 4.95106 4.96949 4.98133 5.04260 5.12846 5.15641 5.17971 5.20363 5.24081 5.25909 5.30630 5.35736 5.39181 5.52762 5.55538 5.65546 5.70133 5.72137 5.93084 6.03919 6.24511 6.37504 7.17614 7.76637 8.24789 9.01126 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.007465 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.443052 B = 3749.988545 C = 5122.537887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.163 4.163 4 C -0.061 4.061 5 H 0.061 0.939 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.094 4.094 9 H 0.037 0.963 10 C 0.155 3.845 11 N -0.602 5.602 12 C -0.236 4.236 13 H 0.032 0.968 14 C -0.003 4.003 15 N -0.938 5.938 16 Si 0.910 3.090 17 H -0.298 1.298 18 H -0.304 1.304 19 H -0.242 1.242 20 C 0.166 3.834 21 C -0.142 4.142 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.071 4.071 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.047 0.953 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.281 5.780 10.888 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C -0.181 4.181 4 C -0.079 4.079 5 H 0.079 0.921 6 C -0.191 4.191 7 C -0.144 4.144 8 C -0.115 4.115 9 H 0.055 0.945 10 C 0.030 3.970 11 N -0.324 5.324 12 C -0.366 4.366 13 H 0.049 0.951 14 C -0.200 4.200 15 N -0.581 5.581 16 Si 0.738 3.262 17 H -0.225 1.225 18 H -0.232 1.232 19 H -0.165 1.165 20 C 0.060 3.940 21 C -0.181 4.181 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.164 4.164 25 C -0.108 4.108 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.092 0.908 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.144 5.804 10.830 17.275 hybrid contribution 1.356 -0.445 -0.210 1.442 sum -10.788 5.360 10.620 16.059 Atomic orbital electron populations 1.20924 0.91247 1.02513 1.02513 1.21112 0.96739 0.94921 1.00286 1.21899 0.95502 0.97423 1.03316 1.19979 0.93081 0.95485 0.99359 0.92090 1.21721 1.01229 0.97414 0.98695 1.21667 0.98846 0.94170 0.99756 1.21609 0.95934 0.95606 0.98363 0.94460 1.21199 0.95369 0.87760 0.92717 1.44257 1.30907 1.36198 1.20989 1.18218 0.88742 1.43541 0.86123 0.95064 1.26177 0.97884 0.98308 0.97653 1.70110 1.07517 1.48891 1.31585 0.86213 0.77768 0.78029 0.84210 1.22545 1.23177 1.16481 1.21323 0.86716 0.90133 0.95836 1.22827 0.98301 0.97195 0.99765 1.22380 0.96820 0.97670 0.97951 1.22236 1.00433 0.95099 0.97649 1.22485 0.98226 0.96835 0.98826 1.20478 0.94132 0.95033 1.01133 0.90631 0.91490 0.92095 0.86956 0.92568 0.91682 0.92243 0.93149 0.91169 0.95510 0.93453 0.93172 0.90891 0.93858 0.92295 0.89703 0.92045 0.90391 0.94473 0.90931 0.94311 0.90837 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.87 71.24 0.70 -1.69 16 2 C -0.13 -3.46 5.83 -14.84 -0.09 -3.55 16 3 C -0.16 -4.18 8.59 27.29 0.23 -3.94 16 4 C -0.06 -1.63 2.97 -11.73 -0.03 -1.67 16 5 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.13 -2.80 9.14 71.98 0.66 -2.14 16 7 C -0.11 -3.27 4.60 30.73 0.14 -3.13 16 8 C -0.09 -3.43 2.45 -10.65 -0.03 -3.46 16 9 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 10 C 0.15 6.43 3.39 86.38 0.29 6.72 16 11 N -0.60 -27.07 1.76 -674.03 -1.19 -28.25 16 12 C -0.24 -13.01 7.90 84.03 0.66 -12.34 16 13 H 0.03 1.96 7.34 -2.91 -0.02 1.94 16 14 C 0.00 -0.16 5.02 84.86 0.43 0.27 16 15 N -0.94 -58.70 13.97 21.65 0.30 -58.40 16 16 Si 0.91 45.67 26.58 68.60 1.82 47.49 16 17 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 18 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 19 H -0.24 -11.17 6.11 99.48 0.61 -10.56 16 20 C 0.17 6.14 2.31 45.71 0.11 6.25 16 21 C -0.14 -5.17 6.42 31.70 0.20 -4.96 16 22 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 23 C -0.12 -3.66 6.83 31.67 0.22 -3.44 16 24 C -0.12 -4.29 4.73 31.32 0.15 -4.15 16 25 C -0.07 -2.17 3.85 29.66 0.11 -2.05 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.25 7.89 -2.39 -0.02 1.23 16 28 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 29 H 0.11 2.44 7.80 -2.91 -0.02 2.42 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.03 1.24 5.50 -2.39 -0.01 1.23 16 36 H 0.05 1.79 8.00 -2.38 -0.02 1.77 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.07 2.40 6.96 -2.39 -0.02 2.38 16 39 H 0.04 1.93 7.04 -2.38 -0.02 1.91 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.71 8.14 -2.38 -0.02 1.70 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 2.08 7.53 -2.39 -0.02 2.06 16 46 H 0.04 1.61 6.95 -2.38 -0.02 1.60 16 47 H 0.07 2.38 4.78 -2.39 -0.01 2.37 16 48 H 0.07 2.00 7.87 -2.38 -0.02 1.98 16 Total: -1.00 -63.38 353.20 5.70 -57.67 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.79 Total: 17.77 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.98 Total: -36.28 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -0.88 Total: -86.65 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.82 Total: 47.49 kcal Total: -63.38 5.70 -57.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428274744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -63.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds