Wall clock time and date at job start Mon Mar 30 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29447 * 117.95756 * 2 1 4 4 C 1.50063 * 124.07448 * 179.53514 * 3 2 1 5 5 H 1.09000 * 109.24187 * 256.99167 * 4 3 2 6 6 C 1.52999 * 109.36139 * 137.33396 * 4 3 2 7 7 C 1.53022 * 110.14767 * 17.12218 * 4 3 2 8 8 C 1.53390 * 108.61766 * 310.46586 * 7 4 3 9 9 H 1.09000 * 109.63642 * 307.84888 * 8 7 4 10 10 C 1.52998 * 109.64211 * 187.22483 * 8 7 4 11 11 N 1.46498 * 109.47276 * 174.99781 * 10 8 7 12 12 C 1.36931 * 120.00044 * 89.99634 * 11 10 8 13 13 H 1.08004 * 119.99958 * 217.61849 * 12 11 10 14 14 C 1.38811 * 120.00231 * 37.62531 * 12 11 10 15 15 N 1.31625 * 119.99666 * 20.76958 * 14 12 11 16 16 Si 1.86798 * 120.00225 * 200.77246 * 14 12 11 17 17 H 1.48498 * 109.47017 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47317 * 119.99975 * 16 14 12 19 19 H 1.48503 * 109.47019 * 239.99781 * 16 14 12 20 20 C 1.46506 * 119.99898 * 270.00195 * 11 10 8 21 21 C 1.54272 * 110.03090 * 235.54518 * 20 11 10 22 22 C 1.54888 * 104.19634 * 217.10469 * 21 20 11 23 23 C 1.54894 * 102.74696 * 37.93988 * 22 21 20 24 24 C 1.53866 * 110.03316 * 118.37703 * 20 11 10 25 25 C 1.50060 * 117.96635 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47572 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46961 * 120.00750 * 1 2 3 28 28 H 1.09006 * 109.46510 * 239.99772 * 1 2 3 29 29 H 1.08000 * 117.96035 * 359.55323 * 3 2 1 30 30 H 1.08996 * 109.47036 * 299.31033 * 6 4 3 31 31 H 1.09003 * 109.46661 * 59.30867 * 6 4 3 32 32 H 1.08997 * 109.47239 * 179.30676 * 6 4 3 33 33 H 1.09003 * 109.64006 * 70.25280 * 7 4 3 34 34 H 1.09001 * 109.64428 * 190.66771 * 7 4 3 35 35 H 1.08996 * 109.47213 * 294.99613 * 10 8 7 36 36 H 1.09003 * 109.47466 * 54.99580 * 10 8 7 37 37 H 0.96997 * 119.99424 * 174.92375 * 15 14 12 38 38 H 1.09003 * 110.01346 * 356.98134 * 20 11 10 39 39 H 1.09007 * 110.48243 * 335.77826 * 21 20 11 40 40 H 1.09000 * 110.48739 * 98.42509 * 21 20 11 41 41 H 1.08999 * 110.75591 * 279.62693 * 22 21 20 42 42 H 1.08998 * 110.91777 * 156.32740 * 22 21 20 43 43 H 1.09003 * 110.48507 * 203.37871 * 23 22 21 44 44 H 1.09004 * 110.59994 * 80.79290 * 23 22 21 45 45 H 1.08997 * 110.03370 * 238.56666 * 24 20 11 46 46 H 1.08993 * 110.03660 * 359.95017 * 24 20 11 47 47 H 1.08999 * 109.35625 * 317.34159 * 25 2 1 48 48 H 1.09001 * 109.36104 * 76.92066 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 0.0101 5 1 3.9313 1.5757 1.0141 6 6 4.0042 2.4090 -0.9696 7 6 4.2793 -0.0072 -0.4031 8 6 3.6751 -1.1498 0.4229 9 1 3.7212 -0.8998 1.4828 10 6 4.4526 -2.4411 0.1604 11 7 3.9502 -3.5007 1.0384 12 6 2.9230 -4.3050 0.6224 13 1 2.1685 -4.6247 1.3259 14 6 2.8516 -4.7097 -0.7035 15 7 3.9299 -4.6852 -1.4580 16 14 1.2253 -5.2889 -1.4170 17 1 0.1739 -5.2224 -0.3704 18 1 0.8459 -4.4160 -2.5567 19 1 1.3635 -6.6895 -1.8909 20 6 4.5467 -3.6998 2.3617 21 6 5.0335 -5.1564 2.5081 22 6 4.7248 -5.5135 3.9833 23 6 3.3682 -4.8076 4.2292 24 6 3.4879 -3.4781 3.4559 25 6 2.2108 -1.3254 -0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5140 -0.8899 28 1 -0.3632 -0.5139 0.8900 29 1 1.5087 2.0379 -0.0074 30 1 3.6841 2.1362 -1.9751 31 1 3.5255 3.3435 -0.6768 32 1 5.0868 2.5351 -0.9546 33 1 4.1055 -0.1900 -1.4635 34 1 5.3508 0.0555 -0.2130 35 1 4.3219 -2.7389 -0.8799 36 1 5.5112 -2.2750 0.3604 37 1 3.8975 -5.0365 -2.3616 38 1 5.3796 -3.0110 2.5029 39 1 4.4830 -5.8122 1.8336 40 1 6.1044 -5.2218 2.3159 41 1 5.4931 -5.1154 4.6461 42 1 4.6278 -6.5917 4.1106 43 1 3.2237 -4.6186 5.2929 44 1 2.5472 -5.4061 3.8341 45 1 3.8073 -2.6823 4.1287 46 1 2.5305 -3.2215 3.0026 47 1 1.7122 -1.9994 0.6960 48 1 2.1747 -1.7532 -1.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428274745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:35 Heat of formation + Delta-G solvation = -2.906254 kcal Electronic energy + Delta-G solvation = -23360.938963 eV Core-core repulsion = 20414.860785 eV Total energy + Delta-G solvation = -2946.078177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.74664 -37.49518 -34.49092 -33.08432 -31.80484 -30.46491 -27.78907 -26.77199 -26.39669 -25.97535 -25.32564 -22.36281 -20.73549 -19.86893 -19.63416 -18.99346 -17.11640 -16.10609 -15.36125 -15.00396 -14.65397 -14.20682 -13.96332 -13.74794 -13.48026 -13.03779 -12.97276 -12.61901 -12.48992 -12.20712 -11.96028 -11.88322 -11.50174 -11.22238 -11.05762 -11.03206 -10.81977 -10.73086 -10.65704 -10.38171 -10.31374 -10.22643 -10.08137 -9.98828 -9.89114 -9.63045 -9.54411 -9.32453 -9.28940 -8.38190 -8.21687 -6.38885 -5.72068 -3.25410 2.75254 3.35637 3.45850 3.47157 4.50878 5.07057 5.24231 5.26372 5.34196 5.49329 5.51087 5.52649 5.57268 5.67901 5.78628 5.82181 5.86402 5.95555 6.10218 6.13290 6.17031 6.18472 6.24806 6.28708 6.32219 6.38168 6.42074 6.48877 6.49665 6.62070 6.63365 6.66541 6.68812 6.70697 6.88935 6.93130 6.97605 7.02673 7.14292 7.21597 7.29051 7.35459 7.45249 7.61598 7.83015 7.94443 8.63478 9.29385 9.93036 10.52032 11.29314 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.007152 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.728202 B = 3913.920696 C = 4776.076838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.176 4.176 4 C -0.055 4.055 5 H 0.068 0.932 6 C -0.140 4.140 7 C -0.108 4.108 8 C -0.096 4.096 9 H 0.051 0.949 10 C 0.151 3.849 11 N -0.576 5.576 12 C -0.240 4.240 13 H 0.058 0.942 14 C 0.015 3.985 15 N -0.890 5.890 16 Si 0.883 3.117 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.292 1.292 20 C 0.171 3.829 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.062 4.062 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 8.214 4.732 9.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.073 4.073 5 H 0.086 0.914 6 C -0.197 4.197 7 C -0.146 4.146 8 C -0.117 4.117 9 H 0.069 0.931 10 C 0.025 3.975 11 N -0.295 5.295 12 C -0.370 4.370 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.533 5.533 16 Si 0.713 3.287 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.219 1.219 20 C 0.063 3.937 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.173 4.173 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.767 8.226 4.517 9.416 hybrid contribution -0.947 -0.287 -0.446 1.086 sum -1.714 7.939 4.071 9.085 Atomic orbital electron populations 1.20968 0.93606 1.01152 1.02016 1.21306 0.95232 0.96412 0.98121 1.21767 0.95506 0.96437 1.05692 1.19933 0.92966 0.95741 0.98690 0.91414 1.21782 1.00598 0.97800 0.99529 1.21684 0.98674 0.93902 1.00359 1.21890 0.95479 0.96539 0.97823 0.93066 1.21004 0.92345 0.84932 0.99207 1.43927 1.38992 1.33647 1.12962 1.18830 1.00336 1.24914 0.92928 0.92416 1.25107 0.96023 0.98675 0.98619 1.69896 1.26150 1.47748 1.09483 0.86530 0.84877 0.78032 0.79287 1.20113 1.21501 1.21893 1.21016 0.92338 0.93673 0.86644 1.22763 0.99545 0.99833 0.94640 1.22435 0.96839 0.98865 0.98055 1.22247 0.97577 0.97519 0.98140 1.22628 1.01702 0.95477 0.97511 1.20359 0.95039 0.92170 1.02357 0.93006 0.92016 0.91875 0.89226 0.92845 0.93372 0.92966 0.92247 0.92699 0.88614 0.96233 0.93701 0.93686 0.89644 0.93794 0.92986 0.92988 0.93605 0.92098 0.94042 0.91180 0.90029 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.98 36.01 0.36 -1.42 16 2 C -0.11 -1.87 5.84 -100.94 -0.59 -2.46 16 3 C -0.18 -2.73 8.64 -35.90 -0.31 -3.04 16 4 C -0.06 -0.81 2.97 -92.07 -0.27 -1.09 16 5 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.14 -1.75 9.14 37.16 0.34 -1.41 16 7 C -0.11 -1.81 4.58 -26.52 -0.12 -1.94 16 8 C -0.10 -1.85 2.46 -90.19 -0.22 -2.07 16 9 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 10 C 0.15 3.38 4.79 -4.04 -0.02 3.36 16 11 N -0.58 -13.25 2.29 -164.39 -0.38 -13.62 16 12 C -0.24 -6.01 5.89 -15.06 -0.09 -6.10 16 13 H 0.06 1.49 7.36 -52.48 -0.39 1.11 16 14 C 0.02 0.40 4.97 -17.43 -0.09 0.32 16 15 N -0.89 -24.48 11.43 55.49 0.63 -23.85 16 16 Si 0.88 20.97 29.61 -169.99 -5.03 15.94 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.17 3.50 3.43 -66.81 -0.23 3.27 16 21 C -0.13 -2.57 6.40 -25.07 -0.16 -2.73 16 22 C -0.12 -2.05 6.91 -24.74 -0.17 -2.22 16 23 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 24 C -0.13 -2.46 6.19 -25.62 -0.16 -2.62 16 25 C -0.06 -1.23 4.41 -27.96 -0.12 -1.35 16 26 H 0.05 0.66 7.56 -51.93 -0.39 0.27 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.26 7.56 -52.49 -0.40 0.86 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.44 5.46 -51.93 -0.28 2.16 16 36 H 0.02 0.43 7.91 -51.93 -0.41 0.02 16 37 H 0.25 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.04 0.90 7.81 -51.93 -0.41 0.49 16 39 H 0.08 1.99 6.94 -51.93 -0.36 1.63 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16 47 H 0.08 1.75 7.15 -51.93 -0.37 1.38 16 48 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -25.73 361.46 -10.63 -36.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -9.27 Total: 3.37 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.03 Total: -23.64 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.26 Total: -37.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -25.73 -10.63 -36.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428274745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.448 kcal (2) G-P(sol) polarization free energy of solvation -25.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds