Wall clock time and date at job start Mon Mar 30 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29447 * 117.95756 * 2 1 4 4 C 1.50063 * 124.07448 * 179.53514 * 3 2 1 5 5 H 1.09000 * 109.24187 * 256.99167 * 4 3 2 6 6 C 1.52999 * 109.36139 * 137.33396 * 4 3 2 7 7 C 1.53022 * 110.14767 * 17.12218 * 4 3 2 8 8 C 1.53390 * 108.61766 * 310.46586 * 7 4 3 9 9 H 1.09000 * 109.63642 * 307.84888 * 8 7 4 10 10 C 1.52998 * 109.64211 * 187.22483 * 8 7 4 11 11 N 1.46498 * 109.47276 * 174.99781 * 10 8 7 12 12 C 1.36931 * 120.00044 * 89.99634 * 11 10 8 13 13 H 1.08004 * 119.99958 * 217.61849 * 12 11 10 14 14 C 1.38811 * 120.00231 * 37.62531 * 12 11 10 15 15 N 1.31625 * 119.99666 * 20.76958 * 14 12 11 16 16 Si 1.86798 * 120.00225 * 200.77246 * 14 12 11 17 17 H 1.48498 * 109.47017 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47317 * 119.99975 * 16 14 12 19 19 H 1.48503 * 109.47019 * 239.99781 * 16 14 12 20 20 C 1.46506 * 119.99898 * 270.00195 * 11 10 8 21 21 C 1.54272 * 110.03090 * 235.54518 * 20 11 10 22 22 C 1.54888 * 104.19634 * 217.10469 * 21 20 11 23 23 C 1.54894 * 102.74696 * 37.93988 * 22 21 20 24 24 C 1.53866 * 110.03316 * 118.37703 * 20 11 10 25 25 C 1.50060 * 117.96635 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47572 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46961 * 120.00750 * 1 2 3 28 28 H 1.09006 * 109.46510 * 239.99772 * 1 2 3 29 29 H 1.08000 * 117.96035 * 359.55323 * 3 2 1 30 30 H 1.08996 * 109.47036 * 299.31033 * 6 4 3 31 31 H 1.09003 * 109.46661 * 59.30867 * 6 4 3 32 32 H 1.08997 * 109.47239 * 179.30676 * 6 4 3 33 33 H 1.09003 * 109.64006 * 70.25280 * 7 4 3 34 34 H 1.09001 * 109.64428 * 190.66771 * 7 4 3 35 35 H 1.08996 * 109.47213 * 294.99613 * 10 8 7 36 36 H 1.09003 * 109.47466 * 54.99580 * 10 8 7 37 37 H 0.96997 * 119.99424 * 174.92375 * 15 14 12 38 38 H 1.09003 * 110.01346 * 356.98134 * 20 11 10 39 39 H 1.09007 * 110.48243 * 335.77826 * 21 20 11 40 40 H 1.09000 * 110.48739 * 98.42509 * 21 20 11 41 41 H 1.08999 * 110.75591 * 279.62693 * 22 21 20 42 42 H 1.08998 * 110.91777 * 156.32740 * 22 21 20 43 43 H 1.09003 * 110.48507 * 203.37871 * 23 22 21 44 44 H 1.09004 * 110.59994 * 80.79290 * 23 22 21 45 45 H 1.08997 * 110.03370 * 238.56666 * 24 20 11 46 46 H 1.08993 * 110.03660 * 359.95017 * 24 20 11 47 47 H 1.08999 * 109.35625 * 317.34159 * 25 2 1 48 48 H 1.09001 * 109.36104 * 76.92066 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 0.0101 5 1 3.9313 1.5757 1.0141 6 6 4.0042 2.4090 -0.9696 7 6 4.2793 -0.0072 -0.4031 8 6 3.6751 -1.1498 0.4229 9 1 3.7212 -0.8998 1.4828 10 6 4.4526 -2.4411 0.1604 11 7 3.9502 -3.5007 1.0384 12 6 2.9230 -4.3050 0.6224 13 1 2.1685 -4.6247 1.3259 14 6 2.8516 -4.7097 -0.7035 15 7 3.9299 -4.6852 -1.4580 16 14 1.2253 -5.2889 -1.4170 17 1 0.1739 -5.2224 -0.3704 18 1 0.8459 -4.4160 -2.5567 19 1 1.3635 -6.6895 -1.8909 20 6 4.5467 -3.6998 2.3617 21 6 5.0335 -5.1564 2.5081 22 6 4.7248 -5.5135 3.9833 23 6 3.3682 -4.8076 4.2292 24 6 3.4879 -3.4781 3.4559 25 6 2.2108 -1.3254 -0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5140 -0.8899 28 1 -0.3632 -0.5139 0.8900 29 1 1.5087 2.0379 -0.0074 30 1 3.6841 2.1362 -1.9751 31 1 3.5255 3.3435 -0.6768 32 1 5.0868 2.5351 -0.9546 33 1 4.1055 -0.1900 -1.4635 34 1 5.3508 0.0555 -0.2130 35 1 4.3219 -2.7389 -0.8799 36 1 5.5112 -2.2750 0.3604 37 1 3.8975 -5.0365 -2.3616 38 1 5.3796 -3.0110 2.5029 39 1 4.4830 -5.8122 1.8336 40 1 6.1044 -5.2218 2.3159 41 1 5.4931 -5.1154 4.6461 42 1 4.6278 -6.5917 4.1106 43 1 3.2237 -4.6186 5.2929 44 1 2.5472 -5.4061 3.8341 45 1 3.8073 -2.6823 4.1287 46 1 2.5305 -3.2215 3.0026 47 1 1.7122 -1.9994 0.6960 48 1 2.1747 -1.7532 -1.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428274745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:35 Heat of formation + Delta-G solvation = -12.006646 kcal Electronic energy + Delta-G solvation = -23361.333585 eV Core-core repulsion = 20414.860785 eV Total energy + Delta-G solvation = -2946.472800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21265 -39.03447 -36.16499 -34.32575 -33.55311 -32.16348 -29.30707 -28.26380 -27.85467 -27.38405 -26.94794 -24.11508 -21.97529 -21.34559 -21.21288 -20.71409 -18.54303 -17.94352 -17.07986 -16.39271 -16.27802 -15.94897 -15.47414 -15.12966 -14.75887 -14.54061 -14.47951 -14.13560 -14.01847 -13.61162 -13.28120 -13.14183 -13.01578 -12.83673 -12.77895 -12.68357 -12.29595 -12.22101 -12.14923 -12.09667 -11.81461 -11.75659 -11.70457 -11.62395 -11.32302 -11.26548 -11.20066 -10.90884 -10.82464 -10.37557 -9.52583 -8.33411 -7.72429 -5.27867 1.39491 1.45744 1.46503 1.52000 2.53180 3.33007 3.65188 3.87098 3.93878 4.02998 4.04761 4.14928 4.31806 4.37234 4.46977 4.52629 4.63531 4.72213 4.74028 4.78771 4.80237 4.83449 4.91452 4.97193 4.97837 4.98147 5.02517 5.07799 5.12226 5.17515 5.19990 5.24034 5.26635 5.28420 5.33901 5.37895 5.45319 5.52389 5.59091 5.63772 5.73326 5.76543 5.84422 5.92929 6.01172 6.26590 6.61576 7.30516 8.02721 8.54878 9.25340 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.007152 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.728202 B = 3913.920696 C = 4776.076838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C -0.158 4.158 4 C -0.056 4.056 5 H 0.080 0.920 6 C -0.135 4.135 7 C -0.104 4.104 8 C -0.085 4.085 9 H 0.051 0.949 10 C 0.154 3.846 11 N -0.587 5.587 12 C -0.220 4.220 13 H 0.048 0.952 14 C -0.028 4.028 15 N -0.920 5.920 16 Si 0.927 3.073 17 H -0.269 1.269 18 H -0.294 1.294 19 H -0.296 1.296 20 C 0.162 3.838 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.049 4.049 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.246 0.754 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.055 0.945 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 10.336 6.693 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.139 4.139 3 C -0.176 4.176 4 C -0.074 4.074 5 H 0.098 0.902 6 C -0.192 4.192 7 C -0.142 4.142 8 C -0.106 4.106 9 H 0.069 0.931 10 C 0.028 3.972 11 N -0.307 5.307 12 C -0.351 4.351 13 H 0.066 0.934 14 C -0.224 4.224 15 N -0.565 5.565 16 Si 0.757 3.243 17 H -0.194 1.194 18 H -0.221 1.221 19 H -0.224 1.224 20 C 0.055 3.945 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.165 4.165 25 C -0.086 4.086 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.942 10.352 6.505 12.263 hybrid contribution -0.818 -0.924 -1.006 1.592 sum -1.760 9.429 5.498 11.056 Atomic orbital electron populations 1.20942 0.92049 1.02711 1.01621 1.21246 0.96492 0.95272 1.00888 1.22075 0.96153 0.96699 1.02645 1.19997 0.92367 0.95081 1.00004 0.90215 1.21734 1.01579 0.97537 0.98338 1.21635 0.99374 0.94281 0.98902 1.21670 0.94982 0.95830 0.98110 0.93062 1.20895 0.92683 0.86270 0.97346 1.44081 1.38862 1.33775 1.13951 1.18804 1.00254 1.23529 0.92530 0.93429 1.25533 0.97813 0.99920 0.99142 1.70010 1.27514 1.49662 1.09358 0.85808 0.82780 0.77091 0.78577 1.19375 1.22118 1.22352 1.21244 0.93221 0.94183 0.85864 1.22665 0.98814 0.98642 0.96616 1.22382 0.97303 0.99793 0.95510 1.22226 0.97166 0.96070 0.99613 1.22497 0.99579 0.97305 0.97125 1.20087 0.95496 0.93610 0.99440 0.90385 0.92724 0.92060 0.86534 0.93494 0.91299 0.91887 0.93758 0.91771 0.91927 0.96470 0.94415 0.93066 0.93621 0.93856 0.90464 0.91863 0.90471 0.93595 0.91847 0.93553 0.92663 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 9.98 71.24 0.71 -2.57 16 2 C -0.14 -4.58 5.84 -15.10 -0.09 -4.67 16 3 C -0.16 -4.48 8.64 27.03 0.23 -4.25 16 4 C -0.06 -1.52 2.97 -11.73 -0.03 -1.55 16 5 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 6 C -0.13 -2.93 9.14 71.98 0.66 -2.27 16 7 C -0.10 -3.43 4.58 30.73 0.14 -3.29 16 8 C -0.09 -3.32 2.46 -10.52 -0.03 -3.35 16 9 H 0.05 2.00 8.13 -2.39 -0.02 1.98 16 10 C 0.15 7.14 4.79 86.38 0.41 7.55 16 11 N -0.59 -27.87 2.29 -674.02 -1.54 -29.41 16 12 C -0.22 -11.48 5.89 84.03 0.50 -10.99 16 13 H 0.05 2.56 7.36 -2.91 -0.02 2.54 16 14 C -0.03 -1.50 4.97 84.86 0.42 -1.08 16 15 N -0.92 -53.18 11.43 21.65 0.25 -52.93 16 16 Si 0.93 44.83 29.61 68.60 2.03 46.86 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 20 C 0.16 6.60 3.43 45.71 0.16 6.75 16 21 C -0.13 -5.11 6.40 31.67 0.20 -4.90 16 22 C -0.11 -3.46 6.91 31.89 0.22 -3.24 16 23 C -0.11 -3.54 6.83 31.67 0.22 -3.33 16 24 C -0.13 -4.48 6.19 31.32 0.19 -4.28 16 25 C -0.05 -2.00 4.41 29.80 0.13 -1.86 16 26 H 0.08 1.76 7.56 -2.39 -0.02 1.75 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.12 2.75 7.56 -2.91 -0.02 2.73 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 3.38 5.46 -2.39 -0.01 3.37 16 36 H 0.02 0.77 7.91 -2.39 -0.02 0.75 16 37 H 0.25 14.01 8.32 -92.71 -0.77 13.24 16 38 H 0.05 2.01 7.81 -2.39 -0.02 1.99 16 39 H 0.04 2.18 6.94 -2.38 -0.02 2.16 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.05 1.87 7.17 -2.39 -0.02 1.85 16 47 H 0.05 2.47 7.15 -2.39 -0.02 2.46 16 48 H 0.03 1.55 8.08 -2.39 -0.02 1.53 16 Total: -1.00 -58.09 361.46 5.66 -52.43 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.88 Total: 20.38 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 4.05 Total: -37.33 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.29 Total: -82.35 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -58.09 5.66 -52.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428274745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.426 kcal (2) G-P(sol) polarization free energy of solvation -58.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds