Wall clock time and date at job start Mon Mar 30 2020 07:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29444 * 117.96210 * 2 1 4 4 C 1.50062 * 124.07357 * 180.42619 * 3 2 1 5 5 H 1.08997 * 109.35953 * 103.09765 * 4 3 2 6 6 C 1.52998 * 109.35681 * 222.81901 * 4 3 2 7 7 C 1.52941 * 110.30512 * 343.05189 * 4 3 2 8 8 C 1.53392 * 108.48473 * 49.07266 * 7 4 3 9 9 H 1.09006 * 109.63898 * 52.68922 * 8 7 4 10 10 C 1.53002 * 109.64435 * 173.10106 * 8 7 4 11 11 N 1.46898 * 109.47306 * 184.58620 * 10 8 7 12 12 C 1.46897 * 110.99903 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.01412 * 326.38466 * 12 11 10 14 14 C 1.53872 * 110.07668 * 87.80780 * 12 11 10 15 15 C 1.54266 * 106.60044 * 119.30490 * 14 12 11 16 16 C 1.54893 * 104.19500 * 23.61099 * 15 14 12 17 17 H 1.09000 * 110.75571 * 80.37081 * 16 15 14 18 18 C 1.50697 * 110.75379 * 203.74545 * 16 15 14 19 19 H 1.07999 * 120.00325 * 113.32969 * 18 16 15 20 20 C 1.37880 * 119.99873 * 293.32564 * 18 16 15 21 21 N 1.31518 * 119.99845 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00048 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47385 * 59.99814 * 22 20 18 24 24 H 1.48506 * 109.47425 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47352 * 299.99985 * 22 20 18 26 26 C 1.54266 * 110.03035 * 204.99715 * 12 11 10 27 27 C 1.50066 * 117.95983 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47030 * 270.02204 * 1 2 3 29 29 H 1.08995 * 109.47078 * 30.01925 * 1 2 3 30 30 H 1.08997 * 109.47299 * 150.02684 * 1 2 3 31 31 H 1.08001 * 117.95939 * 0.44199 * 3 2 1 32 32 H 1.08997 * 109.47750 * 59.99985 * 6 4 3 33 33 H 1.09004 * 109.47501 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47081 * 299.99867 * 6 4 3 35 35 H 1.09007 * 109.43411 * 289.48589 * 7 4 3 36 36 H 1.09004 * 109.80443 * 168.88726 * 7 4 3 37 37 H 1.09003 * 109.46878 * 64.58140 * 10 8 7 38 38 H 1.09005 * 109.47171 * 304.58477 * 10 8 7 39 39 H 1.00902 * 110.99669 * 303.95374 * 11 10 8 40 40 H 1.09002 * 110.03208 * 238.58717 * 14 12 11 41 41 H 1.08996 * 110.03362 * 0.02562 * 14 12 11 42 42 H 1.09002 * 110.48438 * 142.28717 * 15 14 12 43 43 H 1.08998 * 110.48431 * 264.79545 * 15 14 12 44 44 H 0.97002 * 119.99577 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.48620 * 335.73478 * 26 12 11 46 46 H 1.09004 * 110.48798 * 98.37312 * 26 12 11 47 47 H 1.09005 * 109.35800 * 42.69006 * 27 2 1 48 48 H 1.08994 * 109.36158 * 283.09490 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3031 -0.0092 5 1 3.9339 1.5768 -1.0121 6 6 4.0040 2.4065 0.9731 7 6 4.2826 -0.0061 0.3999 8 6 3.6705 -1.1474 -0.4221 9 1 3.7174 -0.9009 -1.4829 10 6 4.4433 -2.4417 -0.1604 11 7 3.9251 -3.5059 -1.0304 12 6 4.6448 -4.7667 -0.8057 13 1 5.6862 -4.5625 -0.5569 14 6 3.9772 -5.5606 0.3308 15 6 3.5165 -6.9006 -0.2792 16 6 4.4341 -7.0920 -1.5123 17 1 5.4071 -7.4816 -1.2130 18 6 3.7837 -7.9970 -2.5266 19 1 3.4831 -7.6043 -3.4867 20 6 3.5723 -9.3266 -2.2290 21 7 3.9379 -9.8049 -1.0596 22 14 2.7667 -10.4487 -3.4865 23 1 3.5933 -10.4841 -4.7197 24 1 2.6546 -11.8196 -2.9268 25 1 1.4124 -9.9345 -3.8130 26 6 4.5664 -5.6518 -2.0667 27 6 2.2106 -1.3255 0.0006 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.5089 2.0379 0.0074 32 1 3.6727 2.1370 1.9760 33 1 5.0876 2.5245 0.9676 34 1 3.5353 3.3445 0.6754 35 1 4.1116 -0.1865 1.4612 36 1 5.3530 0.0541 0.2031 37 1 4.3210 -2.7332 0.8828 38 1 5.5008 -2.2825 -0.3716 39 1 2.9321 -3.6285 -0.8995 40 1 4.6947 -5.7419 1.1311 41 1 3.1185 -5.0110 0.7159 42 1 3.6599 -7.7133 0.4329 43 1 2.4717 -6.8417 -0.5841 44 1 3.7896 -10.7403 -0.8504 45 1 3.6918 -5.3905 -2.6625 46 1 5.4760 -5.5532 -2.6592 47 1 1.7123 -1.9994 -0.6964 48 1 2.1743 -1.7535 1.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:19 Heat of formation + Delta-G solvation = -29.526135 kcal Electronic energy + Delta-G solvation = -21799.411107 eV Core-core repulsion = 18852.178605 eV Total energy + Delta-G solvation = -2947.232502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50911 -37.74292 -34.79190 -33.66548 -32.56264 -30.99947 -27.99771 -27.19449 -26.72589 -26.66672 -24.49143 -23.27984 -21.30920 -20.57664 -19.27132 -19.04383 -17.87568 -16.33071 -15.78882 -15.47030 -14.81078 -14.57945 -14.36548 -14.21870 -13.89367 -13.56442 -13.28166 -12.99117 -12.66907 -12.55956 -12.50638 -12.31735 -11.96225 -11.92044 -11.64118 -11.60441 -11.25696 -10.99121 -10.88427 -10.73659 -10.65877 -10.52121 -10.35409 -10.19652 -9.94918 -9.73708 -9.50694 -9.03184 -8.83760 -8.74694 -8.31197 -7.90347 -5.95253 -3.97229 2.13868 3.35670 3.39982 3.43011 4.36839 4.48746 4.54084 4.56606 4.89066 4.94285 5.01650 5.16317 5.24874 5.35701 5.37413 5.40503 5.47405 5.51812 5.58689 5.62717 5.67425 5.69892 5.70792 5.78440 5.86738 5.87456 5.88828 5.91487 6.01062 6.06914 6.16925 6.31912 6.41720 6.56057 6.59215 6.73567 6.79588 6.89608 6.90827 7.11353 7.18725 7.38588 7.62955 7.74825 7.81723 7.96179 8.09953 8.53566 9.05884 9.66398 11.14531 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.030803 B = 0.003106 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.775337 B = 9013.330589 C = 9430.217949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.117 4.117 3 C -0.160 4.160 4 C -0.059 4.059 5 H 0.076 0.924 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.084 4.084 9 H 0.081 0.919 10 C 0.064 3.936 11 N -0.683 5.683 12 C 0.083 3.917 13 H 0.064 0.936 14 C -0.153 4.153 15 C -0.100 4.100 16 C 0.048 3.952 17 H 0.030 0.970 18 C -0.510 4.510 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 C -0.102 4.102 27 C -0.082 4.082 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.338 0.662 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 21.690 5.095 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.117 4.117 3 C -0.179 4.179 4 C -0.077 4.077 5 H 0.095 0.905 6 C -0.199 4.199 7 C -0.147 4.147 8 C -0.103 4.103 9 H 0.099 0.901 10 C -0.066 4.066 11 N -0.314 5.314 12 C -0.027 4.027 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.139 4.139 16 C 0.030 3.970 17 H 0.048 0.952 18 C -0.548 4.548 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.140 4.140 27 C -0.119 4.119 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.833 21.711 4.666 22.282 hybrid contribution -0.917 -0.942 0.365 1.364 sum -2.749 20.769 5.031 21.546 Atomic orbital electron populations 1.20966 0.92770 1.02384 1.01839 1.20925 0.95562 0.95087 1.00143 1.21857 0.95640 0.96933 1.03423 1.19956 0.92703 0.95484 0.99560 0.90547 1.21788 1.01053 0.97863 0.99220 1.21679 0.99419 0.93675 0.99905 1.21230 0.93993 0.94340 1.00721 0.90109 1.21997 0.98954 0.91030 0.94602 1.60756 1.08245 1.06634 1.55786 1.22331 0.96239 0.87870 0.96252 0.91783 1.22949 0.98745 0.99637 0.97852 1.22277 0.99396 0.92889 0.99291 1.19580 0.95282 0.89728 0.92447 0.95160 1.21115 1.39217 0.93801 1.00669 0.92709 1.24991 0.95693 0.98093 0.95242 1.69957 1.47571 1.14406 1.21152 0.86718 0.80025 0.79790 0.81796 1.20320 1.21435 1.20336 1.22443 1.00266 0.96291 0.95027 1.20500 0.95055 0.94613 1.01700 0.91834 0.92191 0.91746 0.88304 0.92722 0.92599 0.92834 0.91940 0.91609 0.95677 0.91383 0.84317 0.93329 0.93874 0.91981 0.93610 0.93143 0.92074 0.93632 0.90573 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.87 36.01 0.36 -0.72 16 2 C -0.12 -1.19 5.84 -100.94 -0.59 -1.77 16 3 C -0.16 -1.53 8.61 -35.90 -0.31 -1.84 16 4 C -0.06 -0.52 2.96 -92.11 -0.27 -0.80 16 5 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 6 C -0.14 -1.07 9.13 37.16 0.34 -0.73 16 7 C -0.11 -1.04 4.61 -26.56 -0.12 -1.17 16 8 C -0.08 -0.93 2.44 -90.40 -0.22 -1.15 16 9 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 10 C 0.06 0.82 4.97 -3.82 -0.02 0.80 16 11 N -0.68 -10.52 6.21 -105.54 -0.66 -11.17 16 12 C 0.08 1.48 3.23 -66.60 -0.22 1.27 16 13 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 14 C -0.15 -2.87 6.43 -25.61 -0.16 -3.03 16 15 C -0.10 -2.33 5.75 -25.07 -0.14 -2.48 16 16 C 0.05 1.22 2.73 -89.78 -0.24 0.97 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.51 -14.17 8.49 -34.44 -0.29 -14.46 16 19 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 20 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 21 N -0.89 -25.97 12.41 55.43 0.69 -25.28 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.10 -2.16 5.95 -25.07 -0.15 -2.31 16 27 C -0.08 -0.89 4.64 -28.18 -0.13 -1.02 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 31 H 0.10 0.86 7.81 -52.49 -0.41 0.45 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.61 8.09 -51.92 -0.42 0.19 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.34 5.13 6.69 -39.29 -0.26 4.87 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.74 7.56 -51.93 -0.39 0.35 16 42 H 0.06 1.58 7.63 -51.93 -0.40 1.18 16 43 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.87 7.15 -51.93 -0.37 0.50 16 48 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -28.06 366.90 -11.08 -39.14 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -9.34 Total: 2.07 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -2.28 Total: -26.83 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.03 Total: -36.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.06 -11.08 -39.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.614 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds