Wall clock time and date at job start Mon Mar 30 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29445 * 117.96534 * 2 1 4 4 C 1.50062 * 124.07609 * 180.49161 * 3 2 1 5 5 H 1.09002 * 109.35957 * 222.65996 * 4 3 2 6 6 C 1.52994 * 109.24550 * 103.00757 * 4 3 2 7 7 C 1.53020 * 110.14863 * 342.86851 * 4 3 2 8 8 C 1.53392 * 108.43767 * 49.43866 * 7 4 3 9 9 H 1.08996 * 109.64543 * 52.24570 * 8 7 4 10 10 C 1.52997 * 109.64501 * 172.88127 * 8 7 4 11 11 N 1.46895 * 109.47413 * 183.94362 * 10 8 7 12 12 C 1.46899 * 110.99971 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.01739 * 325.69700 * 12 11 10 14 14 C 1.53869 * 110.03610 * 87.09132 * 12 11 10 15 15 C 1.54271 * 106.60008 * 119.28533 * 14 12 11 16 16 C 1.54880 * 104.19502 * 23.60793 * 15 14 12 17 17 H 1.08999 * 110.75810 * 80.56105 * 16 15 14 18 18 C 1.50705 * 110.75570 * 203.74481 * 16 15 14 19 19 H 1.07992 * 119.99994 * 118.55161 * 18 16 15 20 20 C 1.37875 * 119.99617 * 298.54770 * 18 16 15 21 21 N 1.31524 * 119.99757 * 180.02562 * 20 18 16 22 22 Si 1.86794 * 120.00591 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47236 * 89.99548 * 22 20 18 24 24 H 1.48502 * 109.47433 * 209.99852 * 22 20 18 25 25 H 1.48501 * 109.46859 * 330.00074 * 22 20 18 26 26 C 1.54271 * 110.03337 * 204.30752 * 12 11 10 27 27 C 1.50072 * 117.96000 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47100 * 269.98184 * 1 2 3 29 29 H 1.08996 * 109.47373 * 29.97445 * 1 2 3 30 30 H 1.08993 * 109.47435 * 149.98101 * 1 2 3 31 31 H 1.08000 * 117.95950 * 0.51665 * 3 2 1 32 32 H 1.08999 * 109.47229 * 299.37652 * 6 4 3 33 33 H 1.09003 * 109.47318 * 59.38110 * 6 4 3 34 34 H 1.09003 * 109.47218 * 179.37695 * 6 4 3 35 35 H 1.08999 * 109.64487 * 289.74759 * 7 4 3 36 36 H 1.09002 * 109.64270 * 169.11733 * 7 4 3 37 37 H 1.09009 * 109.47328 * 303.94445 * 10 8 7 38 38 H 1.09007 * 109.47211 * 63.93771 * 10 8 7 39 39 H 1.00897 * 111.00320 * 56.04659 * 11 10 8 40 40 H 1.09005 * 110.03035 * 238.56871 * 14 12 11 41 41 H 1.09004 * 110.03427 * 359.94843 * 14 12 11 42 42 H 1.08999 * 110.48414 * 142.29129 * 15 14 12 43 43 H 1.08999 * 110.48259 * 264.79859 * 15 14 12 44 44 H 0.96996 * 119.99998 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.48562 * 335.78323 * 26 12 11 46 46 H 1.09005 * 110.48632 * 98.42182 * 26 12 11 47 47 H 1.09000 * 109.35750 * 42.63871 * 27 2 1 48 48 H 1.09002 * 109.35438 * 283.05308 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3031 -0.0107 5 1 3.8901 2.0907 0.6873 6 6 4.0622 1.6857 -1.4200 7 6 4.2794 -0.0075 0.4021 8 6 3.6702 -1.1473 -0.4242 9 1 3.7161 -0.8966 -1.4839 10 6 4.4431 -2.4417 -0.1635 11 7 3.9175 -3.5081 -1.0263 12 6 4.6371 -4.7690 -0.8023 13 1 5.6833 -4.5660 -0.5734 14 6 3.9864 -5.5493 0.3533 15 6 3.5099 -6.8932 -0.2355 16 6 4.4050 -7.1002 -1.4824 17 1 5.3804 -7.4940 -1.1967 18 6 3.7334 -8.0124 -2.4764 19 1 3.4939 -7.6506 -3.4653 20 6 3.4249 -9.3090 -2.1232 21 7 2.8393 -10.1053 -2.9908 22 14 3.8387 -9.9347 -0.4125 23 1 2.6948 -9.6775 0.4988 24 1 4.1068 -11.3942 -0.4706 25 1 5.0435 -9.2299 0.0943 26 6 4.5343 -5.6656 -2.0536 27 6 2.2106 -1.3256 -0.0006 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.5089 2.0378 0.0086 32 1 3.7834 0.8970 -2.1188 33 1 3.5836 2.6192 -1.7160 34 1 5.1446 1.8135 -1.4294 35 1 4.1061 -0.1904 1.4626 36 1 5.3503 0.0538 0.2081 37 1 5.4993 -2.2846 -0.3824 38 1 4.3276 -2.7296 0.8815 39 1 3.9540 -3.2382 -1.9978 40 1 4.7171 -5.7256 1.1428 41 1 3.1372 -4.9919 0.7487 42 1 3.6625 -7.6995 0.4819 43 1 2.4601 -6.8330 -0.5227 44 1 2.6219 -11.0173 -2.7423 45 1 3.6509 -5.4063 -2.6371 46 1 5.4343 -5.5760 -2.6620 47 1 1.7118 -1.9991 -0.6975 48 1 2.1748 -1.7540 1.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:21 Heat of formation + Delta-G solvation = -20.226964 kcal Electronic energy + Delta-G solvation = -22011.187426 eV Core-core repulsion = 19064.358167 eV Total energy + Delta-G solvation = -2946.829260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59861 -37.90574 -34.89928 -33.58886 -32.46043 -31.21706 -28.35046 -27.45083 -26.89081 -26.70685 -24.49292 -23.23084 -21.63676 -20.63026 -19.27081 -19.16890 -17.46315 -16.68331 -15.82755 -15.38917 -14.99649 -14.86435 -14.81196 -13.98078 -13.81291 -13.69160 -13.42954 -12.93470 -12.80538 -12.69144 -12.61332 -12.43250 -12.17208 -12.11923 -11.65415 -11.51912 -11.45767 -11.21559 -10.89565 -10.64569 -10.53803 -10.44083 -10.23308 -10.20309 -9.99009 -9.73246 -9.63777 -9.29120 -8.93670 -8.82819 -8.47988 -8.09555 -6.01563 -3.99569 2.16303 3.33839 3.41994 3.44419 4.30620 4.47740 4.52417 4.59581 4.76220 4.97452 5.10338 5.13011 5.27962 5.28586 5.36328 5.39508 5.41753 5.51087 5.52762 5.53894 5.63199 5.68168 5.70880 5.75613 5.78016 5.83000 5.85857 5.91154 6.07260 6.10010 6.13823 6.23606 6.33913 6.39789 6.43526 6.56107 6.61120 6.69907 6.74394 6.88079 6.96645 6.99624 7.17387 7.47978 7.64510 7.70500 7.85261 8.59473 9.02448 9.62077 11.12006 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.003383 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.973079 B = 8275.400849 C = 8513.974591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C -0.168 4.168 4 C -0.057 4.057 5 H 0.072 0.928 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.083 4.083 9 H 0.073 0.927 10 C 0.064 3.936 11 N -0.680 5.680 12 C 0.082 3.918 13 H 0.034 0.966 14 C -0.112 4.112 15 C -0.126 4.126 16 C 0.015 3.985 17 H 0.029 0.971 18 C -0.507 4.507 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.905 5.905 22 Si 0.884 3.116 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.266 1.266 26 C -0.107 4.107 27 C -0.070 4.070 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.337 0.663 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 23.073 7.521 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.114 4.114 3 C -0.186 4.186 4 C -0.075 4.075 5 H 0.090 0.910 6 C -0.200 4.200 7 C -0.149 4.149 8 C -0.102 4.102 9 H 0.091 0.909 10 C -0.066 4.066 11 N -0.311 5.311 12 C -0.027 4.027 13 H 0.052 0.948 14 C -0.150 4.150 15 C -0.164 4.164 16 C -0.004 4.004 17 H 0.047 0.953 18 C -0.545 4.545 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.714 3.286 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.145 4.145 27 C -0.107 4.107 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.156 0.844 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.101 0.899 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.550 22.733 7.920 24.079 hybrid contribution 0.915 -0.221 0.559 1.095 sum 1.466 22.512 8.479 24.100 Atomic orbital electron populations 1.20967 0.92835 1.02352 1.01848 1.21071 0.95642 0.95430 0.99292 1.21784 0.95528 0.96979 1.04280 1.19937 0.92690 0.97550 0.97319 0.91010 1.21828 1.00562 1.01329 0.96251 1.21690 0.99254 0.94053 0.99888 1.21234 0.95074 0.93808 1.00083 0.90915 1.22038 0.95351 0.90711 0.98488 1.60639 1.57763 1.02736 1.09961 1.22266 0.93915 0.89020 0.97474 0.94757 1.22182 0.99480 0.97034 0.96306 1.22745 1.01416 0.94051 0.98210 1.20033 0.95136 0.92247 0.92994 0.95306 1.21017 1.38314 0.95460 0.99686 0.90948 1.24999 0.94564 0.96745 0.96893 1.69912 1.42332 1.07134 1.34971 0.86874 0.79457 0.76977 0.85337 1.20462 1.22426 1.19128 1.22482 1.00657 0.96267 0.95094 1.20362 0.94210 0.93799 1.02300 0.91832 0.92313 0.91641 0.88506 0.92269 0.92908 0.92737 0.91815 0.91868 0.95761 0.91289 0.84449 0.93665 0.91759 0.94093 0.91451 0.92796 0.91037 0.93338 0.89851 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.87 36.00 0.36 -0.75 16 2 C -0.11 -1.16 5.84 -100.94 -0.59 -1.75 16 3 C -0.17 -1.58 8.60 -35.90 -0.31 -1.89 16 4 C -0.06 -0.49 3.13 -92.07 -0.29 -0.78 16 5 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.14 -1.15 8.97 37.15 0.33 -0.82 16 7 C -0.11 -1.01 4.74 -26.52 -0.13 -1.14 16 8 C -0.08 -0.86 2.34 -90.41 -0.21 -1.07 16 9 H 0.07 0.78 6.42 -51.93 -0.33 0.44 16 10 C 0.06 0.75 4.90 -3.83 -0.02 0.73 16 11 N -0.68 -9.57 5.82 -105.54 -0.61 -10.19 16 12 C 0.08 1.37 3.24 -66.60 -0.22 1.15 16 13 H 0.03 0.55 7.82 -51.93 -0.41 0.15 16 14 C -0.11 -1.99 6.52 -25.61 -0.17 -2.16 16 15 C -0.13 -2.75 5.07 -25.07 -0.13 -2.88 16 16 C 0.02 0.36 2.29 -89.75 -0.21 0.15 16 17 H 0.03 0.70 7.37 -51.93 -0.38 0.32 16 18 C -0.51 -14.33 9.13 -34.44 -0.31 -14.65 16 19 H 0.07 2.21 8.03 -52.49 -0.42 1.79 16 20 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 21 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 22 Si 0.88 22.24 24.46 -169.99 -4.16 18.09 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.27 -6.42 6.48 56.52 0.37 -6.06 16 26 C -0.11 -2.10 5.68 -25.03 -0.14 -2.24 16 27 C -0.07 -0.77 4.88 -28.17 -0.14 -0.90 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.06 0.60 8.03 -51.93 -0.42 0.19 16 31 H 0.10 0.84 7.81 -52.49 -0.41 0.43 16 32 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 36 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.02 0.28 8.07 -51.92 -0.42 -0.14 16 38 H 0.07 0.85 8.09 -51.92 -0.42 0.43 16 39 H 0.34 4.54 8.34 -39.29 -0.33 4.21 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 42 H 0.04 0.91 4.90 -51.93 -0.25 0.66 16 43 H 0.07 1.54 8.04 -51.93 -0.42 1.13 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 48 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -29.40 358.20 -10.02 -39.43 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -9.16 Total: 1.61 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.26 Total: -27.07 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.16 Total: -37.45 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.16 Total: 18.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.40 -10.02 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.200 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds