Wall clock time and date at job start Mon Mar 30 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29445 * 117.96534 * 2 1 4 4 C 1.50062 * 124.07609 * 180.49161 * 3 2 1 5 5 H 1.09002 * 109.35957 * 222.65996 * 4 3 2 6 6 C 1.52994 * 109.24550 * 103.00757 * 4 3 2 7 7 C 1.53020 * 110.14863 * 342.86851 * 4 3 2 8 8 C 1.53392 * 108.43767 * 49.43866 * 7 4 3 9 9 H 1.08996 * 109.64543 * 52.24570 * 8 7 4 10 10 C 1.52997 * 109.64501 * 172.88127 * 8 7 4 11 11 N 1.46895 * 109.47413 * 183.94362 * 10 8 7 12 12 C 1.46899 * 110.99971 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.01739 * 325.69700 * 12 11 10 14 14 C 1.53869 * 110.03610 * 87.09132 * 12 11 10 15 15 C 1.54271 * 106.60008 * 119.28533 * 14 12 11 16 16 C 1.54880 * 104.19502 * 23.60793 * 15 14 12 17 17 H 1.08999 * 110.75810 * 80.56105 * 16 15 14 18 18 C 1.50705 * 110.75570 * 203.74481 * 16 15 14 19 19 H 1.07992 * 119.99994 * 118.55161 * 18 16 15 20 20 C 1.37875 * 119.99617 * 298.54770 * 18 16 15 21 21 N 1.31524 * 119.99757 * 180.02562 * 20 18 16 22 22 Si 1.86794 * 120.00591 * 0.02562 * 20 18 16 23 23 H 1.48497 * 109.47236 * 89.99548 * 22 20 18 24 24 H 1.48502 * 109.47433 * 209.99852 * 22 20 18 25 25 H 1.48501 * 109.46859 * 330.00074 * 22 20 18 26 26 C 1.54271 * 110.03337 * 204.30752 * 12 11 10 27 27 C 1.50072 * 117.96000 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47100 * 269.98184 * 1 2 3 29 29 H 1.08996 * 109.47373 * 29.97445 * 1 2 3 30 30 H 1.08993 * 109.47435 * 149.98101 * 1 2 3 31 31 H 1.08000 * 117.95950 * 0.51665 * 3 2 1 32 32 H 1.08999 * 109.47229 * 299.37652 * 6 4 3 33 33 H 1.09003 * 109.47318 * 59.38110 * 6 4 3 34 34 H 1.09003 * 109.47218 * 179.37695 * 6 4 3 35 35 H 1.08999 * 109.64487 * 289.74759 * 7 4 3 36 36 H 1.09002 * 109.64270 * 169.11733 * 7 4 3 37 37 H 1.09009 * 109.47328 * 303.94445 * 10 8 7 38 38 H 1.09007 * 109.47211 * 63.93771 * 10 8 7 39 39 H 1.00897 * 111.00320 * 56.04659 * 11 10 8 40 40 H 1.09005 * 110.03035 * 238.56871 * 14 12 11 41 41 H 1.09004 * 110.03427 * 359.94843 * 14 12 11 42 42 H 1.08999 * 110.48414 * 142.29129 * 15 14 12 43 43 H 1.08999 * 110.48259 * 264.79859 * 15 14 12 44 44 H 0.96996 * 119.99998 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.48562 * 335.78323 * 26 12 11 46 46 H 1.09005 * 110.48632 * 98.42182 * 26 12 11 47 47 H 1.09000 * 109.35750 * 42.63871 * 27 2 1 48 48 H 1.09002 * 109.35438 * 283.05308 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3031 -0.0107 5 1 3.8901 2.0907 0.6873 6 6 4.0622 1.6857 -1.4200 7 6 4.2794 -0.0075 0.4021 8 6 3.6702 -1.1473 -0.4242 9 1 3.7161 -0.8966 -1.4839 10 6 4.4431 -2.4417 -0.1635 11 7 3.9175 -3.5081 -1.0263 12 6 4.6371 -4.7690 -0.8023 13 1 5.6833 -4.5660 -0.5734 14 6 3.9864 -5.5493 0.3533 15 6 3.5099 -6.8932 -0.2355 16 6 4.4050 -7.1002 -1.4824 17 1 5.3804 -7.4940 -1.1967 18 6 3.7334 -8.0124 -2.4764 19 1 3.4939 -7.6506 -3.4653 20 6 3.4249 -9.3090 -2.1232 21 7 2.8393 -10.1053 -2.9908 22 14 3.8387 -9.9347 -0.4125 23 1 2.6948 -9.6775 0.4988 24 1 4.1068 -11.3942 -0.4706 25 1 5.0435 -9.2299 0.0943 26 6 4.5343 -5.6656 -2.0536 27 6 2.2106 -1.3256 -0.0006 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.5089 2.0378 0.0086 32 1 3.7834 0.8970 -2.1188 33 1 3.5836 2.6192 -1.7160 34 1 5.1446 1.8135 -1.4294 35 1 4.1061 -0.1904 1.4626 36 1 5.3503 0.0538 0.2081 37 1 5.4993 -2.2846 -0.3824 38 1 4.3276 -2.7296 0.8815 39 1 3.9540 -3.2382 -1.9978 40 1 4.7171 -5.7256 1.1428 41 1 3.1372 -4.9919 0.7487 42 1 3.6625 -7.6995 0.4819 43 1 2.4601 -6.8330 -0.5227 44 1 2.6219 -11.0173 -2.7423 45 1 3.6509 -5.4063 -2.6371 46 1 5.4343 -5.5760 -2.6620 47 1 1.7118 -1.9991 -0.6975 48 1 2.1748 -1.7540 1.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:20 Heat of formation + Delta-G solvation = -36.143283 kcal Electronic energy + Delta-G solvation = -22011.877610 eV Core-core repulsion = 19064.358167 eV Total energy + Delta-G solvation = -2947.519443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42263 -39.33705 -36.16105 -34.47323 -34.21706 -32.45845 -30.06807 -28.84339 -27.65813 -27.44754 -25.80884 -24.85131 -22.44558 -21.55096 -20.97194 -20.63230 -18.72991 -18.20849 -16.93397 -16.83538 -16.39478 -15.94957 -15.71009 -15.34801 -14.83994 -14.75146 -14.59824 -14.31685 -14.06717 -14.02876 -13.60751 -13.43385 -13.32983 -13.08509 -12.90274 -12.74300 -12.44459 -12.31427 -12.26238 -12.10373 -11.91745 -11.67494 -11.54607 -11.46048 -11.31749 -11.17780 -11.03435 -10.99309 -10.85921 -10.67670 -9.56807 -9.22097 -8.27899 -6.30411 1.33522 1.35976 1.42028 1.47006 2.35415 3.08008 3.26367 3.74919 3.82629 3.89328 3.98840 3.99623 4.22024 4.27312 4.36201 4.39668 4.55290 4.61628 4.67652 4.68771 4.72716 4.76559 4.77324 4.83188 4.87822 4.94308 4.96296 4.97938 4.99131 5.07933 5.08337 5.13088 5.15897 5.23057 5.25186 5.31116 5.36428 5.39753 5.46355 5.47487 5.59938 5.67740 5.81339 5.87306 6.21542 6.30585 6.34931 6.58062 6.76038 7.34888 8.89368 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.003383 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.973079 B = 8275.400849 C = 8513.974591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.163 4.163 4 C -0.058 4.058 5 H 0.084 0.916 6 C -0.140 4.140 7 C -0.107 4.107 8 C -0.076 4.076 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.685 5.685 12 C 0.095 3.905 13 H 0.051 0.949 14 C -0.104 4.104 15 C -0.125 4.125 16 C 0.007 3.993 17 H 0.029 0.971 18 C -0.512 4.512 19 H 0.030 0.970 20 C 0.009 3.991 21 N -0.954 5.954 22 Si 0.947 3.053 23 H -0.268 1.268 24 H -0.297 1.297 25 H -0.245 1.245 26 C -0.102 4.102 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.341 0.659 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.264 0.736 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 25.228 9.750 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.132 4.132 3 C -0.181 4.181 4 C -0.076 4.076 5 H 0.102 0.898 6 C -0.198 4.198 7 C -0.145 4.145 8 C -0.095 4.095 9 H 0.088 0.912 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.015 4.015 13 H 0.069 0.931 14 C -0.142 4.142 15 C -0.163 4.163 16 C -0.012 4.012 17 H 0.047 0.953 18 C -0.550 4.550 19 H 0.049 0.951 20 C -0.187 4.187 21 N -0.595 5.595 22 Si 0.773 3.227 23 H -0.194 1.194 24 H -0.224 1.224 25 H -0.168 1.168 26 C -0.140 4.140 27 C -0.103 4.103 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.887 24.921 10.151 26.975 hybrid contribution 0.465 -0.844 -0.257 0.997 sum 2.352 24.078 9.893 26.137 Atomic orbital electron populations 1.20963 0.92355 1.02405 1.02182 1.21123 0.96183 0.95266 1.00612 1.21978 0.96238 0.96986 1.02915 1.19993 0.92038 0.97649 0.97947 0.89786 1.21805 1.01210 1.01190 0.95556 1.21667 0.99738 0.93614 0.99495 1.21156 0.94508 0.93673 1.00168 0.91209 1.22061 0.95930 0.90387 0.97781 1.60579 1.57715 1.02665 1.10696 1.22041 0.94986 0.89398 0.95029 0.93074 1.22131 1.00352 0.94729 0.96970 1.22616 0.99820 0.96564 0.97318 1.20029 0.94746 0.93445 0.93006 0.95256 1.21355 1.38003 0.96494 0.99179 0.95122 1.25893 0.94560 0.97040 1.01232 1.70066 1.44305 1.07695 1.37454 0.85848 0.80284 0.76311 0.80237 1.19379 1.22419 1.16841 1.22362 1.00396 0.94682 0.96522 1.20277 0.94687 0.94018 1.01332 0.91359 0.91435 0.92429 0.87617 0.93351 0.92339 0.91837 0.91893 0.90910 0.94833 0.91403 0.84011 0.91624 0.90947 0.94240 0.93558 0.92693 0.92614 0.92492 0.91718 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.87 71.23 0.70 -1.38 16 2 C -0.13 -2.50 5.84 -15.10 -0.09 -2.59 16 3 C -0.16 -2.74 8.60 27.03 0.23 -2.51 16 4 C -0.06 -0.85 3.13 -11.73 -0.04 -0.89 16 5 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.14 -1.93 8.97 71.98 0.65 -1.29 16 7 C -0.11 -1.67 4.74 30.73 0.15 -1.53 16 8 C -0.08 -1.43 2.34 -10.66 -0.02 -1.45 16 9 H 0.07 1.37 6.42 -2.39 -0.02 1.36 16 10 C 0.07 1.42 4.90 86.30 0.42 1.84 16 11 N -0.68 -17.98 5.82 -487.83 -2.84 -20.82 16 12 C 0.10 2.92 3.24 45.64 0.15 3.07 16 13 H 0.05 1.45 7.82 -2.38 -0.02 1.43 16 14 C -0.10 -3.41 6.52 31.32 0.20 -3.20 16 15 C -0.13 -5.29 5.07 31.67 0.16 -5.13 16 16 C 0.01 0.32 2.29 -10.23 -0.02 0.30 16 17 H 0.03 1.37 7.37 -2.39 -0.02 1.36 16 18 C -0.51 -29.84 9.13 25.60 0.23 -29.60 16 19 H 0.03 1.97 8.03 -2.91 -0.02 1.95 16 20 C 0.01 0.54 5.46 84.65 0.46 1.00 16 21 N -0.95 -61.09 13.96 21.45 0.30 -60.80 16 22 Si 0.95 45.81 24.46 68.60 1.68 47.49 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.24 -10.89 6.48 99.48 0.64 -10.25 16 26 C -0.10 -3.91 5.68 31.69 0.18 -3.73 16 27 C -0.07 -1.38 4.88 29.66 0.14 -1.24 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.00 7.90 -2.39 -0.02 0.99 16 30 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 31 H 0.11 1.59 7.81 -2.91 -0.02 1.56 16 32 H 0.05 0.77 6.55 -2.39 -0.02 0.75 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 37 H 0.03 0.67 8.07 -2.38 -0.02 0.65 16 38 H 0.07 1.47 8.09 -2.38 -0.02 1.45 16 39 H 0.34 8.68 8.34 -89.70 -0.75 7.94 16 40 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 42 H 0.04 1.66 4.90 -2.39 -0.01 1.65 16 43 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 44 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.06 2.29 7.87 -2.38 -0.02 2.27 16 46 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.06 1.57 8.00 -2.39 -0.02 1.56 16 48 H 0.06 1.41 8.08 -2.39 -0.02 1.39 16 Total: -1.00 -64.50 358.20 2.74 -61.76 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.09 Total: 20.68 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 3.51 Total: -48.32 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.54 Total: -81.61 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.68 Total: 47.49 kcal Total: -64.50 2.74 -61.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.620 kcal (2) G-P(sol) polarization free energy of solvation -64.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds