Wall clock time and date at job start Mon Mar 30 2020 07:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29172 * 117.75472 * 2 1 4 4 C 1.50070 * 123.99416 * 179.61892 * 3 2 1 5 5 H 1.08997 * 109.36315 * 137.29615 * 4 3 2 6 6 C 1.53001 * 109.24593 * 256.95205 * 4 3 2 7 7 C 1.53019 * 110.14796 * 17.08522 * 4 3 2 8 8 C 1.53395 * 108.43924 * 310.56608 * 7 4 3 9 9 H 1.08995 * 109.64572 * 307.74619 * 8 7 4 10 10 C 1.53005 * 109.81841 * 187.22156 * 8 7 4 11 11 N 1.46900 * 109.47062 * 175.94984 * 10 8 7 12 12 C 1.46902 * 110.99856 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.01309 * 325.70344 * 12 11 10 14 14 C 1.53869 * 110.03049 * 87.09010 * 12 11 10 15 15 C 1.54277 * 106.59784 * 119.28527 * 14 12 11 16 16 C 1.54889 * 104.19265 * 23.60882 * 15 14 12 17 17 H 1.09006 * 110.75548 * 80.55656 * 16 15 14 18 18 C 1.50698 * 110.75589 * 203.74249 * 16 15 14 19 19 H 1.08004 * 120.00196 * 118.54680 * 18 16 15 20 20 C 1.37874 * 120.00064 * 298.54668 * 18 16 15 21 21 N 1.31515 * 120.00054 * 179.97438 * 20 18 16 22 22 Si 1.86800 * 120.00140 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47576 * 89.99436 * 22 20 18 24 24 H 1.48499 * 109.47229 * 209.99917 * 22 20 18 25 25 H 1.48507 * 109.46971 * 329.99667 * 22 20 18 26 26 C 1.54261 * 110.03355 * 204.30981 * 12 11 10 27 27 C 1.50070 * 117.96329 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47509 * 269.99483 * 1 2 3 29 29 H 1.09004 * 109.47156 * 29.99925 * 1 2 3 30 30 H 1.09004 * 109.47233 * 149.99647 * 1 2 3 31 31 H 1.08003 * 118.04671 * 359.59679 * 3 2 1 32 32 H 1.09003 * 109.47602 * 180.62281 * 6 4 3 33 33 H 1.09001 * 109.46963 * 300.62087 * 6 4 3 34 34 H 1.08998 * 109.47475 * 60.61512 * 6 4 3 35 35 H 1.08997 * 109.64626 * 190.88377 * 7 4 3 36 36 H 1.09000 * 109.64655 * 70.24857 * 7 4 3 37 37 H 1.09004 * 109.47002 * 295.94955 * 10 8 7 38 38 H 1.09000 * 109.47148 * 55.94978 * 10 8 7 39 39 H 1.00894 * 110.99941 * 56.04743 * 11 10 8 40 40 H 1.08999 * 110.03434 * 238.56775 * 14 12 11 41 41 H 1.08994 * 110.03586 * 359.95514 * 14 12 11 42 42 H 1.08995 * 110.48691 * 142.28707 * 15 14 12 43 43 H 1.08997 * 110.48271 * 264.80295 * 15 14 12 44 44 H 0.97006 * 119.99658 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.48708 * 335.78554 * 26 12 11 46 46 H 1.09004 * 110.48704 * 98.42604 * 26 12 11 47 47 H 1.09002 * 109.35777 * 76.90305 * 27 2 1 48 48 H 1.08998 * 109.35386 * 317.18002 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1085 1.1431 0.0000 4 6 3.6003 1.3062 0.0083 5 1 3.8815 2.0945 -0.6899 6 6 4.0579 1.6896 1.4170 7 6 4.2759 -0.0028 -0.4058 8 6 3.6705 -1.1440 0.4213 9 1 3.7176 -0.8936 1.4810 10 6 4.4447 -2.4384 0.1641 11 7 3.9213 -3.5026 1.0311 12 6 4.6422 -4.7634 0.8106 13 1 4.9271 -4.8518 -0.2378 14 6 5.8942 -4.8178 1.7034 15 6 5.7251 -6.0432 2.6254 16 6 4.7462 -6.9649 1.8563 17 1 5.2721 -7.5310 1.0875 18 6 4.0302 -7.8925 2.8038 19 1 2.9547 -7.8487 2.8929 20 6 4.7479 -8.7972 3.5570 21 7 4.1230 -9.6064 4.3843 22 14 6.6081 -8.8726 3.4036 23 1 7.2239 -7.9439 4.3852 24 1 7.0713 -10.2573 3.6741 25 1 7.0078 -8.4765 2.0293 26 6 3.7555 -5.9576 1.2198 27 6 2.2106 -1.3255 -0.0006 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.5015 2.0364 -0.0067 32 1 5.1401 1.8199 1.4247 33 1 3.5776 2.6220 1.7139 34 1 3.7819 0.9002 2.1161 35 1 5.3469 0.0608 -0.2134 36 1 4.1012 -0.1861 -1.4659 37 1 4.3283 -2.7301 -0.8798 38 1 5.5009 -2.2794 0.3813 39 1 2.9292 -3.6250 0.8946 40 1 6.7866 -4.9336 1.0885 41 1 5.9674 -3.9084 2.2997 42 1 6.6820 -6.5431 2.7748 43 1 5.2982 -5.7443 3.5827 44 1 4.6281 -10.2426 4.9145 45 1 3.0080 -5.6454 1.9491 46 1 3.2760 -6.3946 0.3438 47 1 2.1742 -1.7534 -1.0024 48 1 1.7138 -1.9986 0.6981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:24 Heat of formation + Delta-G solvation = -19.882257 kcal Electronic energy + Delta-G solvation = -21971.732707 eV Core-core repulsion = 19024.918395 eV Total energy + Delta-G solvation = -2946.814312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68067 -37.90681 -34.93603 -33.65592 -32.46844 -31.18391 -28.34212 -27.46789 -26.92122 -26.80291 -24.57416 -23.26232 -21.56982 -20.62015 -19.28459 -19.18034 -17.58000 -16.69479 -15.77157 -15.48514 -15.12801 -14.81857 -14.59938 -14.25526 -13.95077 -13.72172 -13.25060 -13.00114 -12.79925 -12.73492 -12.62567 -12.43550 -12.24488 -12.16476 -11.79030 -11.60058 -11.32331 -11.21127 -10.89762 -10.71007 -10.54309 -10.43105 -10.27315 -10.17248 -9.99083 -9.74038 -9.63520 -9.29029 -8.93490 -8.90689 -8.47860 -8.10682 -6.01389 -3.99386 2.11141 3.34131 3.42196 3.44638 4.30997 4.47646 4.47953 4.53189 4.79125 4.93681 5.01296 5.10822 5.23681 5.28440 5.30669 5.37304 5.41481 5.46781 5.51488 5.55747 5.57678 5.62045 5.69522 5.72716 5.75706 5.78106 5.84966 5.86255 5.98511 6.07180 6.09895 6.16581 6.35924 6.39149 6.43876 6.55299 6.56606 6.69763 6.74701 6.88318 6.88905 6.99992 7.17397 7.48432 7.64687 7.70460 7.85421 8.59610 9.02535 9.62266 11.12157 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.029881 B = 0.003363 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.813693 B = 8323.484966 C = 8809.826375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 C -0.161 4.161 4 C -0.058 4.058 5 H 0.072 0.928 6 C -0.143 4.143 7 C -0.110 4.110 8 C -0.086 4.086 9 H 0.085 0.915 10 C 0.064 3.936 11 N -0.681 5.681 12 C 0.082 3.918 13 H 0.035 0.965 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.015 3.985 17 H 0.029 0.971 18 C -0.507 4.507 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.905 5.905 22 Si 0.884 3.116 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.266 1.266 26 C -0.107 4.107 27 C -0.082 4.082 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.337 0.663 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 22.141 -10.562 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.116 4.116 3 C -0.179 4.179 4 C -0.076 4.076 5 H 0.090 0.910 6 C -0.201 4.201 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.103 0.897 10 C -0.065 4.065 11 N -0.313 5.313 12 C -0.027 4.027 13 H 0.053 0.947 14 C -0.150 4.150 15 C -0.164 4.164 16 C -0.004 4.004 17 H 0.047 0.953 18 C -0.545 4.545 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.713 3.287 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.145 4.145 27 C -0.119 4.119 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.237 22.178 -9.895 24.317 hybrid contribution 0.623 -0.341 -0.831 1.093 sum -0.614 21.838 -10.726 24.337 Atomic orbital electron populations 1.20968 0.92813 1.02136 1.02078 1.20837 0.95563 0.95088 1.00098 1.21763 0.95713 0.96986 1.03402 1.19962 0.92554 0.97606 0.97494 0.90951 1.21833 1.00697 1.01373 0.96148 1.21673 0.99547 0.93983 0.99583 1.21278 0.93947 0.94164 1.01061 0.89707 1.22022 0.99289 0.91154 0.94062 1.60689 1.07876 1.06475 1.56269 1.22273 0.95219 0.88649 0.96605 0.94717 1.22184 0.95524 0.99440 0.97883 1.22750 0.99048 0.95301 0.99346 1.20035 0.92731 0.92685 0.94946 0.95282 1.21017 0.95229 1.16685 1.21561 0.90945 1.24996 0.98201 0.95134 0.94860 1.69912 1.35823 1.22371 1.26235 0.86876 0.86583 0.76172 0.79023 1.20453 1.22425 1.19119 1.22484 0.98299 0.94254 0.99492 1.20499 0.95061 0.94708 1.01586 0.91538 0.92277 0.91951 0.88333 0.92610 0.92945 0.92070 0.91579 0.92023 0.95817 0.91216 0.84393 0.93622 0.91750 0.94067 0.91441 0.92795 0.91060 0.93317 0.91223 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.86 36.00 0.36 -0.66 16 2 C -0.12 -1.10 5.82 -100.88 -0.59 -1.69 16 3 C -0.16 -1.46 8.59 -35.83 -0.31 -1.77 16 4 C -0.06 -0.50 3.13 -92.07 -0.29 -0.78 16 5 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.14 -1.20 8.97 37.16 0.33 -0.87 16 7 C -0.11 -1.00 4.75 -26.52 -0.13 -1.13 16 8 C -0.09 -0.89 2.40 -90.39 -0.22 -1.11 16 9 H 0.08 0.99 6.42 -51.93 -0.33 0.66 16 10 C 0.06 0.77 4.99 -3.82 -0.02 0.75 16 11 N -0.68 -9.83 6.16 -105.54 -0.65 -10.48 16 12 C 0.08 1.38 3.24 -66.60 -0.22 1.16 16 13 H 0.03 0.56 7.82 -51.93 -0.41 0.16 16 14 C -0.11 -2.02 6.52 -25.61 -0.17 -2.19 16 15 C -0.13 -2.78 5.07 -25.07 -0.13 -2.90 16 16 C 0.02 0.36 2.29 -89.74 -0.21 0.15 16 17 H 0.03 0.71 7.37 -51.93 -0.38 0.32 16 18 C -0.51 -14.37 9.13 -34.44 -0.31 -14.69 16 19 H 0.07 2.21 8.03 -52.48 -0.42 1.79 16 20 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 21 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 22 Si 0.88 22.27 24.46 -169.99 -4.16 18.12 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.27 -6.43 6.48 56.52 0.37 -6.06 16 26 C -0.11 -2.12 5.68 -25.04 -0.14 -2.26 16 27 C -0.08 -0.82 4.61 -28.17 -0.13 -0.95 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.10 0.82 7.79 -52.48 -0.41 0.41 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 35 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.02 0.28 8.04 -51.93 -0.42 -0.14 16 38 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.34 4.61 6.85 -39.29 -0.27 4.34 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 42 H 0.04 0.92 4.90 -51.93 -0.25 0.66 16 43 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 48 H 0.08 0.80 7.19 -51.93 -0.37 0.43 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -29.66 356.11 -9.99 -39.64 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -9.06 Total: 1.65 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.26 Total: -27.01 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.12 Total: -37.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.16 Total: 18.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.66 -9.99 -39.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.761 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds