Wall clock time and date at job start Mon Mar 30 2020 07:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29445 * 117.96512 * 2 1 4 4 C 1.50069 * 124.07534 * 179.53105 * 3 2 1 5 5 H 1.09008 * 109.35887 * 257.06406 * 4 3 2 6 6 C 1.52995 * 109.35710 * 137.34407 * 4 3 2 7 7 C 1.53022 * 110.14827 * 17.13302 * 4 3 2 8 8 C 1.53321 * 108.33285 * 310.53501 * 7 4 3 9 9 H 1.09002 * 109.73305 * 307.85135 * 8 7 4 10 10 C 1.52999 * 109.51566 * 187.24193 * 8 7 4 11 11 N 1.46906 * 109.46805 * 176.09518 * 10 8 7 12 12 C 1.46895 * 110.99620 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.02097 * 325.05924 * 12 11 10 14 14 C 1.53878 * 110.03753 * 86.45267 * 12 11 10 15 15 C 1.54261 * 106.60164 * 119.27743 * 14 12 11 16 16 C 1.54893 * 104.19322 * 23.61668 * 15 14 12 17 17 H 1.09000 * 110.75703 * 80.36976 * 16 15 14 18 18 C 1.50705 * 110.75089 * 203.55390 * 16 15 14 19 19 H 1.08002 * 119.99632 * 118.54740 * 18 16 15 20 20 C 1.37868 * 120.00211 * 298.54284 * 18 16 15 21 21 N 1.31522 * 120.00072 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 120.00054 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46882 * 60.00049 * 22 20 18 24 24 H 1.48498 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47272 * 300.00159 * 22 20 18 26 26 C 1.54273 * 110.03127 * 203.61649 * 12 11 10 27 27 C 1.50068 * 117.96073 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46846 * 269.97741 * 1 2 3 29 29 H 1.09002 * 109.46962 * 29.97236 * 1 2 3 30 30 H 1.08994 * 109.47253 * 149.97553 * 1 2 3 31 31 H 1.07997 * 117.96109 * 359.56081 * 3 2 1 32 32 H 1.09008 * 109.47583 * 59.99747 * 6 4 3 33 33 H 1.09000 * 109.47543 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.47450 * 300.00237 * 6 4 3 35 35 H 1.09002 * 109.64000 * 70.25007 * 7 4 3 36 36 H 1.09001 * 109.64150 * 190.87737 * 7 4 3 37 37 H 1.09001 * 109.47139 * 296.08616 * 10 8 7 38 38 H 1.08993 * 109.47349 * 56.09370 * 10 8 7 39 39 H 1.00901 * 110.99513 * 303.94772 * 11 10 8 40 40 H 1.09004 * 110.02987 * 238.57148 * 14 12 11 41 41 H 1.09005 * 110.02959 * 359.94469 * 14 12 11 42 42 H 1.09004 * 110.48304 * 142.28515 * 15 14 12 43 43 H 1.08993 * 110.48828 * 264.93344 * 15 14 12 44 44 H 0.97001 * 119.99466 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.48217 * 335.78518 * 26 12 11 46 46 H 1.09002 * 110.48249 * 98.42585 * 26 12 11 47 47 H 1.09002 * 109.35724 * 317.33740 * 27 2 1 48 48 H 1.08998 * 109.35998 * 77.06380 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 0.0102 5 1 3.9337 1.5743 1.0139 6 6 4.0044 2.4088 -0.9693 7 6 4.2794 -0.0075 -0.4031 8 6 3.6695 -1.1449 0.4245 9 1 3.7139 -0.8937 1.4843 10 6 4.4447 -2.4382 0.1652 11 7 3.9197 -3.5051 1.0279 12 6 4.6422 -4.7647 0.8062 13 1 4.9204 -4.8555 -0.2437 14 6 5.9003 -4.8136 1.6909 15 6 5.7404 -6.0366 2.6174 16 6 4.7588 -6.9629 1.8575 17 1 5.2804 -7.5276 1.0846 18 6 4.0548 -7.8927 2.8119 19 1 2.9799 -7.8532 2.9101 20 6 4.7826 -8.7937 3.5596 21 7 6.0916 -8.8416 3.4404 22 14 3.9098 -9.9467 4.7422 23 1 2.9523 -10.7961 3.9892 24 1 4.9097 -10.8103 5.4202 25 1 3.1735 -9.1507 5.7568 26 6 3.7618 -5.9599 1.2260 27 6 2.2106 -1.3255 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.5090 2.0378 -0.0073 32 1 3.5356 3.3461 -0.6695 33 1 5.0880 2.5268 -0.9631 34 1 3.6734 2.1418 -1.9730 35 1 4.1055 -0.1901 -1.4636 36 1 5.3503 0.0538 -0.2095 37 1 4.3307 -2.7269 -0.8797 38 1 5.5003 -2.2794 0.3853 39 1 3.9548 -3.2346 1.9994 40 1 6.7890 -4.9288 1.0702 41 1 5.9753 -3.9021 2.2841 42 1 6.6997 -6.5337 2.7618 43 1 5.3171 -5.7363 3.5758 44 1 6.6036 -9.4753 3.9668 45 1 3.0188 -5.6473 1.9598 46 1 3.2770 -6.4010 0.3550 47 1 1.7120 -1.9995 0.6960 48 1 2.1767 -1.7521 -1.0030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:26 Heat of formation + Delta-G solvation = -29.211410 kcal Electronic energy + Delta-G solvation = -21749.269640 eV Core-core repulsion = 18802.050786 eV Total energy + Delta-G solvation = -2947.218854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.44397 -37.74607 -34.76320 -33.61007 -32.56993 -31.00323 -27.99251 -27.17116 -26.65861 -26.59916 -24.42517 -23.25604 -21.27585 -20.69388 -19.24736 -19.03582 -17.76657 -16.29940 -15.74309 -15.43248 -14.67720 -14.59295 -14.41634 -14.19896 -13.72753 -13.65964 -13.39121 -12.84187 -12.63214 -12.49317 -12.41695 -12.30192 -12.12858 -11.70348 -11.57981 -11.55182 -11.38138 -10.98522 -10.83547 -10.74434 -10.63334 -10.56900 -10.34013 -10.16500 -9.92951 -9.73168 -9.47142 -9.03970 -8.77950 -8.72618 -8.31271 -7.88940 -5.94883 -3.97399 2.19341 3.35523 3.39860 3.42825 4.37238 4.49135 4.57833 4.60789 4.89586 4.96369 5.11529 5.18648 5.26789 5.36508 5.40084 5.43753 5.52340 5.53151 5.61209 5.64391 5.69134 5.73154 5.78558 5.83057 5.86168 5.90333 5.91695 5.95675 6.06471 6.11592 6.24930 6.35483 6.40991 6.56975 6.63857 6.74351 6.80286 6.89442 6.98227 7.11759 7.20855 7.40217 7.63820 7.77610 7.82003 7.97929 8.10773 8.53088 9.05216 9.66352 11.14298 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003093 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.025031 B = 9051.436877 C = 9657.952561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C -0.167 4.167 4 C -0.058 4.058 5 H 0.074 0.926 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.083 4.083 9 H 0.069 0.931 10 C 0.063 3.937 11 N -0.682 5.682 12 C 0.083 3.917 13 H 0.064 0.936 14 C -0.154 4.154 15 C -0.098 4.098 16 C 0.048 3.952 17 H 0.026 0.974 18 C -0.510 4.510 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 C -0.101 4.101 27 C -0.069 4.069 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.338 0.662 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 20.320 -7.845 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.117 4.117 3 C -0.185 4.185 4 C -0.076 4.076 5 H 0.092 0.908 6 C -0.199 4.199 7 C -0.148 4.148 8 C -0.102 4.102 9 H 0.087 0.913 10 C -0.066 4.066 11 N -0.312 5.312 12 C -0.026 4.026 13 H 0.082 0.918 14 C -0.193 4.193 15 C -0.136 4.136 16 C 0.029 3.971 17 H 0.045 0.955 18 C -0.548 4.548 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.140 4.140 27 C -0.106 4.106 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.156 0.844 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.122 20.066 -8.222 22.282 hybrid contribution 0.500 -0.380 1.159 1.318 sum -4.622 19.686 -7.063 21.419 Atomic orbital electron populations 1.20949 0.92890 1.02087 1.01960 1.21083 0.95614 0.95469 0.99542 1.21834 0.95535 0.96950 1.04165 1.19961 0.92829 0.95424 0.99404 0.90775 1.21785 1.00977 0.97854 0.99285 1.21693 0.99238 0.93746 1.00074 1.21196 0.95088 0.94063 0.99828 0.91254 1.22003 0.95682 0.90812 0.98128 1.60728 1.57369 1.02885 1.10206 1.22323 0.92573 0.89586 0.98125 0.91818 1.22972 0.97665 0.99783 0.98892 1.22240 1.01572 0.93095 0.96686 1.19578 0.91688 0.91626 0.94207 0.95544 1.21111 0.93248 1.17953 1.22534 0.92725 1.24982 0.94835 0.97143 0.97053 1.69960 1.05150 1.36767 1.41192 0.86715 0.79315 0.80943 0.81337 1.20334 1.21436 1.20337 1.22429 0.98241 0.94072 0.99221 1.20349 0.94213 0.93812 1.02203 0.91651 0.92421 0.91843 0.88471 0.92864 0.92675 0.92679 0.91708 0.91886 0.91464 0.95616 0.84375 0.93410 0.93878 0.91610 0.93650 0.93160 0.92034 0.93706 0.89896 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.87 36.00 0.36 -0.74 16 2 C -0.12 -1.21 5.83 -100.94 -0.59 -1.80 16 3 C -0.17 -1.62 8.61 -35.90 -0.31 -1.93 16 4 C -0.06 -0.53 2.96 -92.07 -0.27 -0.80 16 5 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 6 C -0.14 -1.09 9.14 37.16 0.34 -0.75 16 7 C -0.11 -1.06 4.60 -26.55 -0.12 -1.18 16 8 C -0.08 -0.91 2.38 -90.44 -0.22 -1.13 16 9 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 10 C 0.06 0.80 4.90 -3.82 -0.02 0.79 16 11 N -0.68 -10.29 5.87 -105.54 -0.62 -10.91 16 12 C 0.08 1.49 3.23 -66.59 -0.21 1.27 16 13 H 0.06 1.11 7.83 -51.93 -0.41 0.71 16 14 C -0.15 -2.90 6.37 -25.61 -0.16 -3.06 16 15 C -0.10 -2.29 5.57 -25.07 -0.14 -2.43 16 16 C 0.05 1.20 2.81 -89.78 -0.25 0.94 16 17 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 18 C -0.51 -14.16 8.55 -34.44 -0.29 -14.45 16 19 H 0.05 1.50 7.79 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 21 N -0.89 -25.87 12.01 55.43 0.67 -25.21 16 22 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.10 -2.13 5.96 -25.07 -0.15 -2.28 16 27 C -0.07 -0.77 4.87 -28.18 -0.14 -0.91 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.10 0.87 7.80 -52.49 -0.41 0.46 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.03 0.33 8.10 -51.93 -0.42 -0.09 16 39 H 0.34 5.12 8.19 -39.29 -0.32 4.79 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.74 7.59 -51.93 -0.39 0.35 16 42 H 0.07 1.69 7.37 -51.93 -0.38 1.31 16 43 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.06 1.33 7.96 -51.93 -0.41 0.91 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 48 H 0.07 0.82 8.08 -51.93 -0.42 0.41 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -27.75 368.32 -11.14 -38.90 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -9.44 Total: 2.00 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -2.28 Total: -26.84 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.05 Total: -36.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.75 -11.14 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.684 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds