Wall clock time and date at job start Mon Mar 30 2020 07:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29445 * 117.96512 * 2 1 4 4 C 1.50069 * 124.07534 * 179.53105 * 3 2 1 5 5 H 1.09008 * 109.35887 * 257.06406 * 4 3 2 6 6 C 1.52995 * 109.35710 * 137.34407 * 4 3 2 7 7 C 1.53022 * 110.14827 * 17.13302 * 4 3 2 8 8 C 1.53321 * 108.33285 * 310.53501 * 7 4 3 9 9 H 1.09002 * 109.73305 * 307.85135 * 8 7 4 10 10 C 1.52999 * 109.51566 * 187.24193 * 8 7 4 11 11 N 1.46906 * 109.46805 * 176.09518 * 10 8 7 12 12 C 1.46895 * 110.99620 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.02097 * 325.05924 * 12 11 10 14 14 C 1.53878 * 110.03753 * 86.45267 * 12 11 10 15 15 C 1.54261 * 106.60164 * 119.27743 * 14 12 11 16 16 C 1.54893 * 104.19322 * 23.61668 * 15 14 12 17 17 H 1.09000 * 110.75703 * 80.36976 * 16 15 14 18 18 C 1.50705 * 110.75089 * 203.55390 * 16 15 14 19 19 H 1.08002 * 119.99632 * 118.54740 * 18 16 15 20 20 C 1.37868 * 120.00211 * 298.54284 * 18 16 15 21 21 N 1.31522 * 120.00072 * 0.02562 * 20 18 16 22 22 Si 1.86806 * 120.00054 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46882 * 60.00049 * 22 20 18 24 24 H 1.48498 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47272 * 300.00159 * 22 20 18 26 26 C 1.54273 * 110.03127 * 203.61649 * 12 11 10 27 27 C 1.50068 * 117.96073 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46846 * 269.97741 * 1 2 3 29 29 H 1.09002 * 109.46962 * 29.97236 * 1 2 3 30 30 H 1.08994 * 109.47253 * 149.97553 * 1 2 3 31 31 H 1.07997 * 117.96109 * 359.56081 * 3 2 1 32 32 H 1.09008 * 109.47583 * 59.99747 * 6 4 3 33 33 H 1.09000 * 109.47543 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.47450 * 300.00237 * 6 4 3 35 35 H 1.09002 * 109.64000 * 70.25007 * 7 4 3 36 36 H 1.09001 * 109.64150 * 190.87737 * 7 4 3 37 37 H 1.09001 * 109.47139 * 296.08616 * 10 8 7 38 38 H 1.08993 * 109.47349 * 56.09370 * 10 8 7 39 39 H 1.00901 * 110.99513 * 303.94772 * 11 10 8 40 40 H 1.09004 * 110.02987 * 238.57148 * 14 12 11 41 41 H 1.09005 * 110.02959 * 359.94469 * 14 12 11 42 42 H 1.09004 * 110.48304 * 142.28515 * 15 14 12 43 43 H 1.08993 * 110.48828 * 264.93344 * 15 14 12 44 44 H 0.97001 * 119.99466 * 179.97438 * 21 20 18 45 45 H 1.09003 * 110.48217 * 335.78518 * 26 12 11 46 46 H 1.09002 * 110.48249 * 98.42585 * 26 12 11 47 47 H 1.09002 * 109.35724 * 317.33740 * 27 2 1 48 48 H 1.08998 * 109.35998 * 77.06380 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 0.0102 5 1 3.9337 1.5743 1.0139 6 6 4.0044 2.4088 -0.9693 7 6 4.2794 -0.0075 -0.4031 8 6 3.6695 -1.1449 0.4245 9 1 3.7139 -0.8937 1.4843 10 6 4.4447 -2.4382 0.1652 11 7 3.9197 -3.5051 1.0279 12 6 4.6422 -4.7647 0.8062 13 1 4.9204 -4.8555 -0.2437 14 6 5.9003 -4.8136 1.6909 15 6 5.7404 -6.0366 2.6174 16 6 4.7588 -6.9629 1.8575 17 1 5.2804 -7.5276 1.0846 18 6 4.0548 -7.8927 2.8119 19 1 2.9799 -7.8532 2.9101 20 6 4.7826 -8.7937 3.5596 21 7 6.0916 -8.8416 3.4404 22 14 3.9098 -9.9467 4.7422 23 1 2.9523 -10.7961 3.9892 24 1 4.9097 -10.8103 5.4202 25 1 3.1735 -9.1507 5.7568 26 6 3.7618 -5.9599 1.2260 27 6 2.2106 -1.3255 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.5090 2.0378 -0.0073 32 1 3.5356 3.3461 -0.6695 33 1 5.0880 2.5268 -0.9631 34 1 3.6734 2.1418 -1.9730 35 1 4.1055 -0.1901 -1.4636 36 1 5.3503 0.0538 -0.2095 37 1 4.3307 -2.7269 -0.8797 38 1 5.5003 -2.2794 0.3853 39 1 3.9548 -3.2346 1.9994 40 1 6.7890 -4.9288 1.0702 41 1 5.9753 -3.9021 2.2841 42 1 6.6997 -6.5337 2.7618 43 1 5.3171 -5.7363 3.5758 44 1 6.6036 -9.4753 3.9668 45 1 3.0188 -5.6473 1.9598 46 1 3.2770 -6.4010 0.3550 47 1 1.7120 -1.9995 0.6960 48 1 2.1767 -1.7521 -1.0030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:25 Heat of formation + Delta-G solvation = -41.887235 kcal Electronic energy + Delta-G solvation = -21749.819305 eV Core-core repulsion = 18802.050786 eV Total energy + Delta-G solvation = -2947.768519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32609 -39.25216 -36.12037 -34.39623 -34.26378 -32.34959 -29.79588 -28.49816 -27.61550 -27.36550 -25.98122 -24.77957 -22.00290 -21.70440 -21.04773 -20.62162 -18.58079 -18.34403 -16.89117 -16.56882 -16.43406 -15.77888 -15.57193 -15.37891 -14.76855 -14.57748 -14.48069 -14.29091 -14.05368 -13.64974 -13.32726 -13.26609 -13.11033 -13.03103 -12.97478 -12.75636 -12.54487 -12.41371 -12.34106 -12.24950 -11.94160 -11.85755 -11.55842 -11.49028 -11.34163 -11.16380 -11.00821 -10.79395 -10.77539 -10.44387 -9.53877 -9.16581 -8.09769 -6.19752 1.41514 1.42898 1.43312 1.50488 2.44386 3.20038 3.28405 3.75209 3.81302 3.98377 4.07173 4.09785 4.22471 4.28962 4.34842 4.44374 4.49650 4.66322 4.69310 4.72379 4.78948 4.80296 4.85190 4.89189 4.93096 4.95528 5.01948 5.03927 5.08074 5.10480 5.14686 5.20170 5.24320 5.27649 5.29607 5.38763 5.39726 5.46143 5.50232 5.57980 5.67054 5.88089 5.94843 6.02852 6.21216 6.30306 6.41967 6.58241 6.90800 7.47530 8.98193 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003093 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.025031 B = 9051.436877 C = 9657.952561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.133 4.133 3 C -0.164 4.164 4 C -0.060 4.060 5 H 0.075 0.925 6 C -0.138 4.138 7 C -0.106 4.106 8 C -0.076 4.076 9 H 0.065 0.935 10 C 0.067 3.933 11 N -0.680 5.680 12 C 0.097 3.903 13 H 0.074 0.926 14 C -0.141 4.141 15 C -0.090 4.090 16 C 0.037 3.963 17 H -0.004 1.004 18 C -0.531 4.531 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.952 3.048 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.271 1.271 26 C -0.092 4.092 27 C -0.065 4.065 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.340 0.660 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 22.108 -8.135 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.133 4.133 3 C -0.182 4.182 4 C -0.078 4.078 5 H 0.094 0.906 6 C -0.196 4.196 7 C -0.144 4.144 8 C -0.095 4.095 9 H 0.083 0.917 10 C -0.062 4.062 11 N -0.311 5.311 12 C -0.013 4.013 13 H 0.092 0.908 14 C -0.180 4.180 15 C -0.128 4.128 16 C 0.018 3.982 17 H 0.015 0.985 18 C -0.569 4.569 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.778 3.222 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.130 4.130 27 C -0.102 4.102 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.158 0.842 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.668 21.872 -8.520 24.147 hybrid contribution 0.665 -0.935 1.235 1.685 sum -5.003 20.937 -7.285 22.726 Atomic orbital electron populations 1.20947 0.92134 1.02531 1.02152 1.21146 0.96331 0.95167 1.00653 1.22018 0.96076 0.97066 1.03011 1.20001 0.92365 0.95536 0.99890 0.90644 1.21754 1.01509 0.97592 0.98708 1.21664 0.99584 0.93425 0.99688 1.21119 0.94822 0.93704 0.99852 0.91657 1.22041 0.96046 0.90611 0.97546 1.60635 1.57030 1.02638 1.10753 1.22055 0.91280 0.89749 0.98199 0.90823 1.22859 0.98624 0.98232 0.98328 1.22016 0.99300 0.94662 0.96851 1.19577 0.92847 0.92283 0.93465 0.98542 1.21492 0.93344 1.18860 1.23221 0.93055 1.25767 0.95532 0.98739 0.98731 1.70092 1.06416 1.37430 1.42033 0.85703 0.78304 0.78949 0.79261 1.19664 1.21031 1.19604 1.22258 0.97551 0.94459 0.98749 1.20269 0.94363 0.94196 1.01413 0.91570 0.91325 0.92088 0.87492 0.92084 0.92000 0.92846 0.91764 0.91210 0.91360 0.95179 0.84177 0.92625 0.91827 0.94598 0.95189 0.93204 0.92681 0.93515 0.91430 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.87 71.24 0.70 -1.30 16 2 C -0.13 -2.54 5.83 -15.10 -0.09 -2.63 16 3 C -0.16 -2.84 8.61 27.04 0.23 -2.61 16 4 C -0.06 -0.95 2.96 -11.73 -0.03 -0.98 16 5 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 6 C -0.14 -1.78 9.14 71.98 0.66 -1.12 16 7 C -0.11 -1.81 4.60 30.71 0.14 -1.67 16 8 C -0.08 -1.54 2.38 -10.68 -0.03 -1.57 16 9 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 10 C 0.07 1.55 4.90 86.30 0.42 1.97 16 11 N -0.68 -19.43 5.87 -487.82 -2.86 -22.29 16 12 C 0.10 3.34 3.23 45.64 0.15 3.49 16 13 H 0.07 2.43 7.83 -2.39 -0.02 2.41 16 14 C -0.14 -5.16 6.37 31.32 0.20 -4.96 16 15 C -0.09 -4.29 5.57 31.67 0.18 -4.11 16 16 C 0.04 1.90 2.81 -10.25 -0.03 1.87 16 17 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 18 C -0.53 -30.06 8.55 25.60 0.22 -29.84 16 19 H 0.05 2.86 7.79 -2.91 -0.02 2.84 16 20 C 0.01 0.61 5.33 84.65 0.45 1.06 16 21 N -0.92 -54.58 12.01 21.45 0.26 -54.33 16 22 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 C -0.09 -3.85 5.96 31.67 0.19 -3.67 16 27 C -0.07 -1.39 4.87 29.66 0.14 -1.25 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.96 7.89 -2.39 -0.02 0.95 16 30 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.11 1.64 7.80 -2.91 -0.02 1.62 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 38 H 0.03 0.69 8.10 -2.39 -0.02 0.68 16 39 H 0.34 9.70 8.19 -89.69 -0.73 8.96 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 2.07 7.59 -2.38 -0.02 2.05 16 42 H 0.04 1.89 7.37 -2.38 -0.02 1.87 16 43 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 44 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.05 2.36 7.96 -2.39 -0.02 2.34 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 48 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 Total: -1.00 -59.86 368.32 3.08 -56.78 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.15 Total: 20.61 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.51 Total: -47.32 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.60 Total: -76.61 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -59.86 3.08 -56.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.892 kcal (2) G-P(sol) polarization free energy of solvation -59.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds