Wall clock time and date at job start Mon Mar 30 2020 07:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29443 * 117.96587 * 2 1 4 4 C 1.50070 * 124.07919 * 180.49357 * 3 2 1 5 5 C 1.53024 * 110.14328 * 342.86427 * 4 3 2 6 6 C 1.53391 * 108.44152 * 49.43909 * 5 4 3 7 7 H 1.08997 * 109.82089 * 52.34925 * 6 5 4 8 8 C 1.52999 * 109.64493 * 172.88171 * 6 5 4 9 9 C 1.50067 * 117.96252 * 180.02562 * 2 1 3 10 10 H 1.09006 * 109.25028 * 282.98595 * 9 2 1 11 11 C 1.53005 * 109.35770 * 42.64157 * 9 2 1 12 12 N 1.46900 * 109.47156 * 187.02267 * 11 9 2 13 13 C 1.46902 * 110.99614 * 180.76937 * 12 11 9 14 14 H 1.09000 * 110.43771 * 323.90430 * 13 12 11 15 15 C 1.54266 * 110.48951 * 86.45039 * 13 12 11 16 16 C 1.53870 * 106.59880 * 142.28354 * 15 13 12 17 17 C 1.54263 * 106.60111 * 0.02562 * 16 15 13 18 18 H 1.08993 * 110.49223 * 95.19813 * 17 16 15 19 19 C 1.50706 * 110.48969 * 217.71131 * 17 16 15 20 20 H 1.08003 * 120.00319 * 118.53974 * 19 17 16 21 21 C 1.37880 * 119.99742 * 298.54610 * 19 17 16 22 22 N 1.31513 * 119.99962 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00130 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47106 * 179.97438 * 23 21 19 25 25 H 1.48508 * 109.46833 * 299.99809 * 23 21 19 26 26 H 1.48497 * 109.47154 * 59.99385 * 23 21 19 27 27 C 1.54891 * 104.19472 * 336.38300 * 17 16 15 28 28 H 1.08997 * 109.47107 * 264.84087 * 1 2 3 29 29 H 1.08998 * 109.46445 * 24.83307 * 1 2 3 30 30 H 1.08998 * 109.46951 * 144.83883 * 1 2 3 31 31 H 1.08005 * 117.95902 * 0.48561 * 3 2 1 32 32 H 1.08992 * 109.35835 * 222.66052 * 4 3 2 33 33 H 1.08997 * 109.24675 * 102.99520 * 4 3 2 34 34 H 1.09008 * 109.64129 * 289.75129 * 5 4 3 35 35 H 1.09004 * 109.64438 * 169.12243 * 5 4 3 36 36 H 1.08995 * 109.47125 * 178.94120 * 8 6 5 37 37 H 1.08996 * 109.46727 * 298.94089 * 8 6 5 38 38 H 1.09005 * 109.47268 * 58.94214 * 8 6 5 39 39 H 1.08998 * 109.47343 * 67.01606 * 11 9 2 40 40 H 1.09009 * 109.46852 * 307.02017 * 11 9 2 41 41 H 1.00893 * 111.00585 * 56.81141 * 12 11 9 42 42 H 1.09007 * 110.02903 * 23.00510 * 15 13 12 43 43 H 1.08999 * 110.07489 * 261.59416 * 15 13 12 44 44 H 1.09004 * 110.03695 * 240.71556 * 16 15 13 45 45 H 1.08998 * 110.03371 * 119.28849 * 16 15 13 46 46 H 0.97003 * 120.00374 * 359.97438 * 22 21 19 47 47 H 1.08998 * 110.75368 * 156.25605 * 27 17 16 48 48 H 1.08995 * 110.76020 * 279.63380 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 -0.0107 5 6 4.2795 -0.0075 0.4022 6 6 3.6703 -1.1473 -0.4240 7 1 3.7164 -0.9005 -1.4847 8 6 4.4432 -2.4417 -0.1631 9 6 2.2107 -1.3255 -0.0006 10 1 2.1749 -1.7518 1.0020 11 6 1.5106 -2.2709 -0.9789 12 7 2.0893 -3.6158 -0.8592 13 6 1.4525 -4.5483 -1.7988 14 1 0.3912 -4.3214 -1.8999 15 6 2.1503 -4.4905 -3.1734 16 6 2.1800 -5.9314 -3.7123 17 6 1.4987 -6.8146 -2.6467 18 1 0.4452 -6.9577 -2.8866 19 6 2.1989 -8.1447 -2.5378 20 1 2.6600 -8.4376 -1.6061 21 6 2.2509 -8.9876 -3.6277 22 7 1.6890 -8.6311 -4.7621 23 14 3.1193 -10.6360 -3.4931 24 1 3.0341 -11.3480 -4.7933 25 1 4.5452 -10.4169 -3.1406 26 1 2.4686 -11.4535 -2.4379 27 6 1.6540 -6.0111 -1.3316 28 1 -0.3633 -0.0924 1.0235 29 1 -0.3632 0.9327 -0.4316 30 1 -0.3633 -0.8401 -0.5918 31 1 1.5089 2.0379 0.0081 32 1 3.8901 2.0907 0.6872 33 1 3.9311 1.5755 -1.0148 34 1 4.1060 -0.1904 1.4627 35 1 5.3504 0.0537 0.2082 36 1 3.9964 -3.2536 -0.7370 37 1 5.4822 -2.3117 -0.4658 38 1 4.4015 -2.6820 0.8993 39 1 1.6464 -1.9061 -1.9970 40 1 0.4463 -2.3113 -0.7464 41 1 2.0224 -3.9553 0.0885 42 1 3.1667 -4.1130 -3.0606 43 1 1.5874 -3.8495 -3.8520 44 1 3.2107 -6.2533 -3.8611 45 1 1.6308 -5.9900 -4.6520 46 1 1.2377 -7.7753 -4.8320 47 1 0.8866 -6.2961 -0.6120 48 1 2.6500 -6.1481 -0.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:43 Heat of formation + Delta-G solvation = -20.681023 kcal Electronic energy + Delta-G solvation = -22386.528027 eV Core-core repulsion = 19439.679078 eV Total energy + Delta-G solvation = -2946.848949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69915 -37.75928 -34.82552 -33.69535 -32.54087 -30.94036 -28.14288 -27.98441 -26.46949 -25.98825 -23.84060 -23.40746 -21.42470 -20.65929 -19.63179 -18.97401 -17.80437 -16.73503 -15.65394 -15.46463 -15.16599 -14.67605 -14.26777 -13.98962 -13.71447 -13.65372 -13.19489 -13.10830 -12.73967 -12.49392 -12.42653 -12.36985 -12.02605 -11.76758 -11.58495 -11.43285 -11.25965 -10.88097 -10.74070 -10.59392 -10.51414 -10.36272 -10.11668 -10.10373 -10.02811 -9.87668 -9.68308 -9.25170 -8.83704 -8.38972 -8.27639 -7.93117 -6.25959 -3.98018 2.11928 3.47200 3.48797 3.67416 4.30596 4.58461 4.59468 4.69058 4.75121 5.03205 5.16823 5.19703 5.28535 5.38811 5.40729 5.46240 5.49328 5.50480 5.57640 5.66965 5.68100 5.74068 5.81348 5.85989 5.90475 5.92863 5.97858 6.08365 6.10977 6.20702 6.31485 6.44448 6.52818 6.54772 6.59342 6.68203 6.73644 6.85367 6.88301 6.95853 7.03232 7.16712 7.41785 7.48646 7.66093 7.77736 8.33344 8.51166 8.96958 9.73918 11.11890 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003466 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.561879 B = 8077.418927 C = 8444.366685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 C -0.163 4.163 4 C -0.088 4.088 5 C -0.118 4.118 6 C -0.071 4.071 7 H 0.067 0.933 8 C -0.167 4.167 9 C -0.043 4.043 10 H 0.076 0.924 11 C 0.064 3.936 12 N -0.673 5.673 13 C 0.077 3.923 14 H 0.037 0.963 15 C -0.110 4.110 16 C -0.112 4.112 17 C 0.035 3.965 18 H 0.016 0.984 19 C -0.592 4.592 20 H 0.048 0.952 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 1.065 2.935 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.289 1.289 27 C -0.106 4.106 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.337 0.663 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.272 0.728 47 H 0.043 0.957 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 18.748 9.989 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 C -0.181 4.181 4 C -0.125 4.125 5 C -0.156 4.156 6 C -0.090 4.090 7 H 0.085 0.915 8 C -0.224 4.224 9 C -0.062 4.062 10 H 0.094 0.906 11 C -0.065 4.065 12 N -0.303 5.303 13 C -0.032 4.032 14 H 0.055 0.945 15 C -0.148 4.148 16 C -0.150 4.150 17 C 0.016 3.984 18 H 0.034 0.966 19 C -0.631 4.631 20 H 0.066 0.934 21 C -0.186 4.186 22 N -0.552 5.552 23 Si 0.894 3.106 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.216 1.216 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.872 17.515 8.701 19.647 hybrid contribution -1.359 1.493 1.325 2.415 sum 0.513 19.008 10.026 21.496 Atomic orbital electron populations 1.21086 0.92931 1.02532 1.02006 1.20874 0.95495 0.94790 1.00407 1.21879 0.96174 0.96876 1.03171 1.20421 0.92729 0.98014 1.01362 1.21746 0.99361 0.94486 0.99984 1.21040 0.93299 0.95311 0.99304 0.91451 1.22283 0.98870 0.99304 1.01934 1.20020 0.94711 0.92128 0.99329 0.90589 1.22117 0.95405 0.89406 0.99583 1.60749 1.57830 1.01802 1.09896 1.22527 0.94773 0.92595 0.93322 0.94484 1.22190 0.99902 0.98324 0.94406 1.22338 1.01387 0.92432 0.98878 1.19532 0.95407 0.93753 0.89690 0.96571 1.21985 1.38757 1.02482 0.99835 0.93413 1.25752 0.96699 1.03477 0.92661 1.70786 1.33738 1.24419 1.26305 0.83595 0.75932 0.75320 0.75732 1.20908 1.21503 1.21607 1.22600 1.00566 0.91937 0.99347 0.91851 0.92244 0.91224 0.88318 0.91646 0.91215 0.92170 0.91923 0.86881 0.94291 0.94080 0.91084 0.95070 0.84540 0.91837 0.94176 0.92356 0.93763 0.91573 0.93829 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.69 36.01 0.35 -0.84 16 2 C -0.12 -1.20 5.48 -100.94 -0.55 -1.75 16 3 C -0.16 -1.60 9.37 -35.90 -0.34 -1.93 16 4 C -0.09 -0.81 6.12 -28.18 -0.17 -0.98 16 5 C -0.12 -1.17 5.31 -26.52 -0.14 -1.31 16 6 C -0.07 -0.80 2.20 -90.41 -0.20 -1.00 16 7 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 8 C -0.17 -2.04 8.74 37.16 0.32 -1.72 16 9 C -0.04 -0.48 2.04 -92.06 -0.19 -0.67 16 10 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 11 C 0.06 0.79 4.48 -3.82 -0.02 0.78 16 12 N -0.67 -9.43 3.00 -104.98 -0.31 -9.74 16 13 C 0.08 1.32 3.17 -66.06 -0.21 1.11 16 14 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 15 C -0.11 -2.07 6.45 -25.62 -0.17 -2.24 16 16 C -0.11 -2.59 5.28 -25.62 -0.14 -2.73 16 17 C 0.04 0.87 2.44 -90.11 -0.22 0.65 16 18 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 19 C -0.59 -16.60 8.40 -34.44 -0.29 -16.88 16 20 H 0.05 1.33 7.77 -52.48 -0.41 0.92 16 21 C 0.02 0.52 5.33 -17.82 -0.09 0.43 16 22 N -0.92 -27.60 13.41 55.43 0.74 -26.86 16 23 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.11 -2.16 5.69 -24.74 -0.14 -2.30 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.50 7.80 -51.93 -0.40 0.09 16 30 H 0.07 0.67 5.67 -51.93 -0.29 0.38 16 31 H 0.10 0.87 7.74 -52.48 -0.41 0.46 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.60 8.13 -51.92 -0.42 0.18 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 1.61 5.24 -51.93 -0.27 1.33 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 40 H 0.03 0.38 5.95 -51.92 -0.31 0.07 16 41 H 0.34 4.46 8.48 -39.30 -0.33 4.13 16 42 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.47 7.83 -51.93 -0.41 1.06 16 45 H 0.04 1.06 6.83 -51.93 -0.35 0.71 16 46 H 0.27 8.10 5.45 -40.82 -0.22 7.88 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -28.69 356.09 -10.41 -39.10 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.93 Total: 3.29 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: -2.19 Total: -31.38 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.43 Total: -36.60 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.69 -10.41 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.415 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds