Wall clock time and date at job start Mon Mar 30 2020 07:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29443 * 117.96587 * 2 1 4 4 C 1.50070 * 124.07919 * 180.49357 * 3 2 1 5 5 C 1.53024 * 110.14328 * 342.86427 * 4 3 2 6 6 C 1.53391 * 108.44152 * 49.43909 * 5 4 3 7 7 H 1.08997 * 109.82089 * 52.34925 * 6 5 4 8 8 C 1.52999 * 109.64493 * 172.88171 * 6 5 4 9 9 C 1.50067 * 117.96252 * 180.02562 * 2 1 3 10 10 H 1.09006 * 109.25028 * 282.98595 * 9 2 1 11 11 C 1.53005 * 109.35770 * 42.64157 * 9 2 1 12 12 N 1.46900 * 109.47156 * 187.02267 * 11 9 2 13 13 C 1.46902 * 110.99614 * 180.76937 * 12 11 9 14 14 H 1.09000 * 110.43771 * 323.90430 * 13 12 11 15 15 C 1.54266 * 110.48951 * 86.45039 * 13 12 11 16 16 C 1.53870 * 106.59880 * 142.28354 * 15 13 12 17 17 C 1.54263 * 106.60111 * 0.02562 * 16 15 13 18 18 H 1.08993 * 110.49223 * 95.19813 * 17 16 15 19 19 C 1.50706 * 110.48969 * 217.71131 * 17 16 15 20 20 H 1.08003 * 120.00319 * 118.53974 * 19 17 16 21 21 C 1.37880 * 119.99742 * 298.54610 * 19 17 16 22 22 N 1.31513 * 119.99962 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00130 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47106 * 179.97438 * 23 21 19 25 25 H 1.48508 * 109.46833 * 299.99809 * 23 21 19 26 26 H 1.48497 * 109.47154 * 59.99385 * 23 21 19 27 27 C 1.54891 * 104.19472 * 336.38300 * 17 16 15 28 28 H 1.08997 * 109.47107 * 264.84087 * 1 2 3 29 29 H 1.08998 * 109.46445 * 24.83307 * 1 2 3 30 30 H 1.08998 * 109.46951 * 144.83883 * 1 2 3 31 31 H 1.08005 * 117.95902 * 0.48561 * 3 2 1 32 32 H 1.08992 * 109.35835 * 222.66052 * 4 3 2 33 33 H 1.08997 * 109.24675 * 102.99520 * 4 3 2 34 34 H 1.09008 * 109.64129 * 289.75129 * 5 4 3 35 35 H 1.09004 * 109.64438 * 169.12243 * 5 4 3 36 36 H 1.08995 * 109.47125 * 178.94120 * 8 6 5 37 37 H 1.08996 * 109.46727 * 298.94089 * 8 6 5 38 38 H 1.09005 * 109.47268 * 58.94214 * 8 6 5 39 39 H 1.08998 * 109.47343 * 67.01606 * 11 9 2 40 40 H 1.09009 * 109.46852 * 307.02017 * 11 9 2 41 41 H 1.00893 * 111.00585 * 56.81141 * 12 11 9 42 42 H 1.09007 * 110.02903 * 23.00510 * 15 13 12 43 43 H 1.08999 * 110.07489 * 261.59416 * 15 13 12 44 44 H 1.09004 * 110.03695 * 240.71556 * 16 15 13 45 45 H 1.08998 * 110.03371 * 119.28849 * 16 15 13 46 46 H 0.97003 * 120.00374 * 359.97438 * 22 21 19 47 47 H 1.08998 * 110.75368 * 156.25605 * 27 17 16 48 48 H 1.08995 * 110.76020 * 279.63380 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3031 -0.0107 5 6 4.2795 -0.0075 0.4022 6 6 3.6703 -1.1473 -0.4240 7 1 3.7164 -0.9005 -1.4847 8 6 4.4432 -2.4417 -0.1631 9 6 2.2107 -1.3255 -0.0006 10 1 2.1749 -1.7518 1.0020 11 6 1.5106 -2.2709 -0.9789 12 7 2.0893 -3.6158 -0.8592 13 6 1.4525 -4.5483 -1.7988 14 1 0.3912 -4.3214 -1.8999 15 6 2.1503 -4.4905 -3.1734 16 6 2.1800 -5.9314 -3.7123 17 6 1.4987 -6.8146 -2.6467 18 1 0.4452 -6.9577 -2.8866 19 6 2.1989 -8.1447 -2.5378 20 1 2.6600 -8.4376 -1.6061 21 6 2.2509 -8.9876 -3.6277 22 7 1.6890 -8.6311 -4.7621 23 14 3.1193 -10.6360 -3.4931 24 1 3.0341 -11.3480 -4.7933 25 1 4.5452 -10.4169 -3.1406 26 1 2.4686 -11.4535 -2.4379 27 6 1.6540 -6.0111 -1.3316 28 1 -0.3633 -0.0924 1.0235 29 1 -0.3632 0.9327 -0.4316 30 1 -0.3633 -0.8401 -0.5918 31 1 1.5089 2.0379 0.0081 32 1 3.8901 2.0907 0.6872 33 1 3.9311 1.5755 -1.0148 34 1 4.1060 -0.1904 1.4627 35 1 5.3504 0.0537 0.2082 36 1 3.9964 -3.2536 -0.7370 37 1 5.4822 -2.3117 -0.4658 38 1 4.4015 -2.6820 0.8993 39 1 1.6464 -1.9061 -1.9970 40 1 0.4463 -2.3113 -0.7464 41 1 2.0224 -3.9553 0.0885 42 1 3.1667 -4.1130 -3.0606 43 1 1.5874 -3.8495 -3.8520 44 1 3.2107 -6.2533 -3.8611 45 1 1.6308 -5.9900 -4.6520 46 1 1.2377 -7.7753 -4.8320 47 1 0.8866 -6.2961 -0.6120 48 1 2.6500 -6.1481 -0.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:43 Heat of formation + Delta-G solvation = -33.413003 kcal Electronic energy + Delta-G solvation = -22387.080127 eV Core-core repulsion = 19439.679078 eV Total energy + Delta-G solvation = -2947.401049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61489 -39.30459 -36.23585 -34.51553 -34.24616 -32.14405 -29.90421 -29.14008 -27.45018 -27.21233 -25.67785 -24.62117 -22.37798 -21.54653 -21.26112 -20.69368 -18.91453 -18.53876 -17.03567 -16.44678 -16.25075 -15.75331 -15.67932 -15.60167 -14.82408 -14.80491 -14.49437 -14.37513 -13.99890 -13.75760 -13.64437 -13.31076 -13.16818 -12.95380 -12.73623 -12.55142 -12.47542 -12.32911 -12.14921 -12.11757 -11.94016 -11.85975 -11.68157 -11.58570 -11.41360 -11.13371 -10.97683 -10.91659 -10.50205 -10.42362 -9.59072 -9.08893 -8.53759 -6.26917 1.36498 1.53750 1.61687 1.80544 2.60209 3.18332 3.24117 3.76976 3.80352 3.85128 3.93233 3.99362 4.19628 4.25263 4.38424 4.40025 4.48749 4.54962 4.56649 4.68357 4.73264 4.75784 4.78574 4.80759 4.85716 4.93182 4.98546 5.00143 5.02462 5.08239 5.12918 5.14790 5.18836 5.20884 5.25303 5.28456 5.37248 5.44939 5.52487 5.63316 5.73334 5.82896 5.93199 6.10736 6.16058 6.22690 6.28812 6.51911 6.72359 7.53463 8.84451 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003466 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.561879 B = 8077.418927 C = 8444.366685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.130 4.130 3 C -0.161 4.161 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.069 4.069 7 H 0.054 0.946 8 C -0.163 4.163 9 C -0.036 4.036 10 H 0.077 0.923 11 C 0.068 3.932 12 N -0.667 5.667 13 C 0.094 3.906 14 H 0.042 0.958 15 C -0.099 4.099 16 C -0.102 4.102 17 C 0.022 3.978 18 H -0.009 1.009 19 C -0.607 4.607 20 H 0.045 0.955 21 C -0.033 4.033 22 N -0.942 5.942 23 Si 1.111 2.889 24 H -0.286 1.286 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.096 4.096 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.052 0.948 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 20.228 11.545 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C -0.179 4.179 4 C -0.126 4.126 5 C -0.153 4.153 6 C -0.088 4.088 7 H 0.073 0.927 8 C -0.220 4.220 9 C -0.055 4.055 10 H 0.095 0.905 11 C -0.061 4.061 12 N -0.298 5.298 13 C -0.016 4.016 14 H 0.060 0.940 15 C -0.138 4.138 16 C -0.141 4.141 17 C 0.003 3.997 18 H 0.009 0.991 19 C -0.645 4.645 20 H 0.063 0.937 21 C -0.231 4.231 22 N -0.580 5.580 23 Si 0.933 3.067 24 H -0.212 1.212 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.134 4.134 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.187 19.021 10.284 21.734 hybrid contribution -1.455 1.066 0.852 1.995 sum 0.732 20.087 11.136 22.979 Atomic orbital electron populations 1.21073 0.92173 1.02737 1.02367 1.20923 0.96135 0.94466 1.01524 1.22082 0.96665 0.97153 1.02042 1.20462 0.92327 0.97957 1.01898 1.21711 0.99623 0.94287 0.99662 1.20994 0.93566 0.95397 0.98832 0.92713 1.22205 0.98789 0.99180 1.01836 1.19920 0.94392 0.92362 0.98786 0.90491 1.22113 0.95971 0.88429 0.99546 1.60687 1.57445 1.01911 1.09755 1.22210 0.95012 0.91450 0.92878 0.93979 1.22071 1.00799 0.95288 0.95599 1.22122 0.98924 0.95146 0.97892 1.19570 0.93545 0.93775 0.92826 0.99129 1.22397 1.38470 1.03997 0.99601 0.93709 1.27173 0.96833 1.06870 0.92268 1.70895 1.35376 1.24351 1.27371 0.83008 0.75915 0.71688 0.76051 1.21177 1.19758 1.19704 1.22423 1.00547 0.93300 0.97107 0.91244 0.91396 0.91829 0.87105 0.90136 0.91013 0.92079 0.91496 0.88716 0.94416 0.93604 0.92064 0.94296 0.83604 0.91356 0.92654 0.95138 0.95591 0.92675 0.92890 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.69 71.24 0.69 -1.36 16 2 C -0.13 -2.40 5.48 -15.10 -0.08 -2.48 16 3 C -0.16 -2.74 9.37 27.04 0.25 -2.49 16 4 C -0.09 -1.41 6.12 29.66 0.18 -1.23 16 5 C -0.12 -2.03 5.31 30.73 0.16 -1.87 16 6 C -0.07 -1.45 2.20 -10.66 -0.02 -1.48 16 7 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16 8 C -0.16 -3.77 8.74 71.98 0.63 -3.14 16 9 C -0.04 -0.73 2.04 -11.73 -0.02 -0.75 16 10 H 0.08 1.55 8.10 -2.38 -0.02 1.54 16 11 C 0.07 1.56 4.48 86.30 0.39 1.95 16 12 N -0.67 -17.62 3.00 -486.04 -1.46 -19.08 16 13 C 0.09 3.13 3.17 45.98 0.15 3.28 16 14 H 0.04 1.39 7.88 -2.39 -0.02 1.37 16 15 C -0.10 -3.69 6.45 31.32 0.20 -3.49 16 16 C -0.10 -4.87 5.28 31.32 0.17 -4.71 16 17 C 0.02 1.11 2.44 -10.46 -0.03 1.08 16 18 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 19 C -0.61 -34.58 8.40 25.60 0.22 -34.37 16 20 H 0.04 2.52 7.77 -2.91 -0.02 2.49 16 21 C -0.03 -1.94 5.33 84.66 0.45 -1.49 16 22 N -0.94 -58.29 13.41 21.45 0.29 -58.01 16 23 Si 1.11 51.06 29.90 68.60 2.05 53.11 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C -0.10 -3.85 5.69 31.88 0.18 -3.66 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.97 7.80 -2.39 -0.02 0.95 16 30 H 0.06 1.09 5.67 -2.39 -0.01 1.08 16 31 H 0.11 1.62 7.74 -2.91 -0.02 1.59 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 2.58 5.24 -2.39 -0.01 2.57 16 37 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 40 H 0.04 0.86 5.95 -2.38 -0.01 0.85 16 41 H 0.34 8.45 8.48 -89.70 -0.76 7.69 16 42 H 0.07 2.48 8.04 -2.38 -0.02 2.46 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 1.58 7.83 -2.38 -0.02 1.56 16 45 H 0.03 1.29 6.83 -2.39 -0.02 1.27 16 46 H 0.26 16.25 5.45 -92.71 -0.51 15.75 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 Total: -1.00 -62.42 356.09 4.80 -57.63 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.41 Total: 22.56 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 3.51 Total: -56.21 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.17 Total: -77.09 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -62.42 4.80 -57.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.212 kcal (2) G-P(sol) polarization free energy of solvation -62.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds