Wall clock time and date at job start Mon Mar 30 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29442 * 117.95926 * 2 1 4 4 C 1.50074 * 124.07090 * 179.53537 * 3 2 1 5 5 C 1.53020 * 110.14739 * 17.12571 * 4 3 2 6 6 C 1.53404 * 108.42843 * 310.55110 * 5 4 3 7 7 H 1.09001 * 109.64958 * 187.13700 * 6 5 4 8 8 C 1.52999 * 109.64104 * 307.76707 * 6 5 4 9 9 C 1.50069 * 117.95948 * 179.97438 * 2 1 3 10 10 H 1.09000 * 109.35591 * 77.06392 * 9 2 1 11 11 C 1.52993 * 109.35913 * 317.33832 * 9 2 1 12 12 N 1.46896 * 109.47520 * 65.00165 * 11 9 2 13 13 C 1.46899 * 111.00473 * 179.97438 * 12 11 9 14 14 H 1.08996 * 110.43017 * 323.90929 * 13 12 11 15 15 C 1.54265 * 110.48548 * 86.45526 * 13 12 11 16 16 C 1.53873 * 106.59997 * 142.42599 * 15 13 12 17 17 C 1.54268 * 106.59703 * 359.97438 * 16 15 13 18 18 H 1.09002 * 110.48435 * 95.07241 * 17 16 15 19 19 C 1.50704 * 110.48600 * 217.58396 * 17 16 15 20 20 H 1.08001 * 120.00134 * 116.76106 * 19 17 16 21 21 C 1.37882 * 119.99806 * 296.76016 * 19 17 16 22 22 N 1.31507 * 119.99801 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 119.99760 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47425 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47113 * 119.99908 * 23 21 19 26 26 H 1.48499 * 109.47357 * 239.99815 * 23 21 19 27 27 C 1.54888 * 110.59929 * 201.29745 * 13 12 11 28 28 H 1.09008 * 109.47129 * 270.02337 * 1 2 3 29 29 H 1.09004 * 109.47374 * 30.02285 * 1 2 3 30 30 H 1.09000 * 109.47118 * 150.02542 * 1 2 3 31 31 H 1.07998 * 117.96700 * 359.50058 * 3 2 1 32 32 H 1.08991 * 109.35745 * 137.33529 * 4 3 2 33 33 H 1.09005 * 109.35109 * 256.92051 * 4 3 2 34 34 H 1.08992 * 109.64341 * 70.25427 * 5 4 3 35 35 H 1.09007 * 109.64307 * 190.88257 * 5 4 3 36 36 H 1.09001 * 109.47238 * 178.94133 * 8 6 5 37 37 H 1.09002 * 109.47067 * 298.93801 * 8 6 5 38 38 H 1.08998 * 109.47536 * 58.93949 * 8 6 5 39 39 H 1.08998 * 109.47637 * 304.99938 * 11 9 2 40 40 H 1.09006 * 109.47129 * 185.00205 * 11 9 2 41 41 H 1.00900 * 111.00158 * 56.03889 * 12 11 9 42 42 H 1.08993 * 110.03585 * 23.13094 * 15 13 12 43 43 H 1.09006 * 110.07186 * 261.73023 * 15 13 12 44 44 H 1.09002 * 110.03017 * 240.71676 * 16 15 13 45 45 H 1.08996 * 110.07624 * 119.30418 * 16 15 13 46 46 H 0.97003 * 119.99704 * 180.02562 * 22 21 19 47 47 H 1.08992 * 110.76047 * 85.00815 * 27 13 12 48 48 H 1.09000 * 110.75534 * 321.63384 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6061 1.3031 0.0101 5 6 4.2793 -0.0074 -0.4032 6 6 3.6704 -1.1471 0.4236 7 1 4.2210 -2.0693 0.2379 8 6 3.7353 -0.7950 1.9111 9 6 2.2106 -1.3255 0.0006 10 1 2.1766 -1.7530 -1.0015 11 6 1.5108 -2.2707 0.9792 12 7 0.1506 -2.5516 0.5009 13 6 -0.5530 -3.4587 1.4174 14 1 0.1381 -4.1931 1.8309 15 6 -1.2344 -2.6614 2.5487 16 6 -2.5775 -3.3576 2.8299 17 6 -2.6657 -4.5533 1.8592 18 1 -2.3157 -5.4647 2.3439 19 6 -4.0788 -4.7289 1.3658 20 1 -4.3025 -4.6127 0.3156 21 6 -5.0861 -5.0381 2.2552 22 7 -4.8135 -5.1802 3.5338 23 14 -6.8375 -5.2565 1.6435 24 1 -6.8784 -5.0471 0.1740 25 1 -7.3048 -6.6301 1.9604 26 1 -7.7217 -4.2668 2.3099 27 6 -1.7248 -4.1654 0.6918 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.5088 2.0379 -0.0083 32 1 3.8898 2.0908 -0.6878 33 1 3.9332 1.5768 1.0132 34 1 4.1055 -0.1901 -1.4635 35 1 5.3503 0.0538 -0.2095 36 1 3.2851 -1.5980 2.4946 37 1 4.7761 -0.6686 2.2094 38 1 3.1912 0.1325 2.0891 39 1 1.4608 -1.8036 1.9627 40 1 2.0716 -3.2030 1.0478 41 1 0.1668 -2.9257 -0.4361 42 1 -1.4061 -1.6333 2.2299 43 1 -0.6120 -2.6754 3.4435 44 1 -3.4012 -2.6674 2.6474 45 1 -2.6075 -3.7101 3.8608 46 1 -5.5221 -5.3980 4.1595 47 1 -1.3743 -5.0538 0.1665 48 1 -2.2232 -3.4809 0.0055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:45 Heat of formation + Delta-G solvation = -14.114997 kcal Electronic energy + Delta-G solvation = -22494.493798 eV Core-core repulsion = 19547.929573 eV Total energy + Delta-G solvation = -2946.564225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90161 -37.59399 -34.62303 -33.27106 -32.36211 -30.86393 -28.07159 -27.77921 -26.63567 -26.26265 -24.14928 -23.28409 -21.49752 -20.67694 -19.34497 -18.84794 -17.06198 -16.27129 -15.72724 -15.26659 -14.97201 -14.79551 -14.52883 -14.28271 -14.06576 -13.28639 -12.99118 -12.86460 -12.71609 -12.45447 -12.25232 -11.99359 -11.89679 -11.72460 -11.54298 -11.44216 -11.15023 -11.01537 -10.80995 -10.63605 -10.52367 -10.35785 -10.21725 -10.05543 -9.88049 -9.82367 -9.44757 -9.04916 -8.65292 -8.56591 -8.32891 -7.87931 -5.95872 -3.97983 2.39737 3.32568 3.40675 3.44621 4.36182 4.49055 4.60504 4.64371 4.86053 5.08658 5.22877 5.27573 5.32909 5.36332 5.40010 5.46104 5.54365 5.61988 5.67018 5.73043 5.77245 5.82609 5.91123 5.93966 5.99945 6.03328 6.07349 6.12742 6.20763 6.30489 6.36081 6.41084 6.59611 6.63399 6.72087 6.83745 6.91308 6.92588 7.05330 7.19360 7.28350 7.42412 7.60968 7.72593 7.81404 7.98068 8.08511 8.52575 9.05218 9.65702 11.13951 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.003435 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.741466 B = 8149.525685 C = 8354.744074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.189 4.189 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.086 4.086 7 H 0.069 0.931 8 C -0.151 4.151 9 C -0.046 4.046 10 H 0.076 0.924 11 C 0.067 3.933 12 N -0.675 5.675 13 C 0.078 3.922 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.095 4.095 17 C 0.051 3.949 18 H 0.026 0.974 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.285 1.285 27 C -0.114 4.114 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.333 0.667 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.258 0.742 47 H 0.041 0.959 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 9.991 -5.948 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.207 4.207 4 C -0.121 4.121 5 C -0.151 4.151 6 C -0.105 4.105 7 H 0.087 0.913 8 C -0.208 4.208 9 C -0.065 4.065 10 H 0.094 0.906 11 C -0.063 4.063 12 N -0.305 5.305 13 C -0.031 4.031 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.134 4.134 17 C 0.032 3.968 18 H 0.044 0.956 19 C -0.549 4.549 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.152 4.152 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.151 0.849 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.143 10.517 -5.485 20.846 hybrid contribution -0.564 -0.916 -0.310 1.119 sum 16.579 9.602 -5.795 20.016 Atomic orbital electron populations 1.21143 0.91268 1.02079 1.02700 1.20864 0.96647 0.93473 0.97594 1.21790 0.95515 0.97277 1.06077 1.20378 0.93304 0.97298 1.01157 1.21619 0.99020 0.94837 0.99625 1.21167 0.95277 0.98306 0.95781 0.91270 1.21952 1.01210 1.02355 0.95320 1.20091 0.93206 0.93928 0.99257 0.90633 1.22042 0.88869 0.96562 0.98808 1.61007 1.15448 1.48661 1.05396 1.22511 0.94695 0.92063 0.93808 0.94648 1.22254 0.97847 0.99471 0.95532 1.22041 0.93040 0.98020 1.00259 1.19375 0.93424 0.93688 0.90340 0.95618 1.21201 0.92485 1.47305 0.93887 0.92676 1.24983 0.98762 0.95372 0.94944 1.69986 1.32425 1.48676 1.01791 0.86609 0.85242 0.77586 0.78986 1.19814 1.21180 1.21112 1.22714 0.95347 0.97720 0.99455 0.91564 0.94466 0.88806 0.88425 0.91957 0.91326 0.91956 0.92059 0.92402 0.93192 0.91808 0.90662 0.95693 0.84879 0.92149 0.94491 0.93109 0.93068 0.93248 0.93982 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.35 36.01 0.30 -1.20 16 2 C -0.09 -1.01 5.09 -100.94 -0.51 -1.53 16 3 C -0.19 -2.07 8.71 -35.90 -0.31 -2.38 16 4 C -0.08 -0.77 5.48 -28.18 -0.15 -0.93 16 5 C -0.11 -0.99 5.65 -26.51 -0.15 -1.14 16 6 C -0.09 -0.83 2.91 -90.40 -0.26 -1.09 16 7 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 8 C -0.15 -1.46 7.91 37.16 0.29 -1.17 16 9 C -0.05 -0.51 2.30 -92.07 -0.21 -0.72 16 10 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 11 C 0.07 0.83 3.85 -3.83 -0.01 0.81 16 12 N -0.67 -9.54 2.94 -104.98 -0.31 -9.85 16 13 C 0.08 1.36 3.17 -66.06 -0.21 1.15 16 14 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 15 C -0.11 -2.16 6.45 -25.61 -0.17 -2.32 16 16 C -0.09 -2.24 5.50 -25.61 -0.14 -2.38 16 17 C 0.05 1.26 2.75 -90.12 -0.25 1.01 16 18 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 19 C -0.51 -14.07 8.39 -34.44 -0.29 -14.36 16 20 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 21 C 0.06 1.70 5.34 -17.82 -0.10 1.60 16 22 N -0.89 -25.86 12.48 55.43 0.69 -25.17 16 23 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.11 -2.31 5.71 -24.75 -0.14 -2.45 16 28 H 0.07 0.96 7.69 -51.92 -0.40 0.56 16 29 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.09 1.29 5.85 -51.93 -0.30 0.99 16 31 H 0.10 1.06 7.80 -52.49 -0.41 0.65 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.61 6.91 -51.93 -0.36 0.25 16 34 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.67 5.67 -51.93 -0.29 0.37 16 39 H 0.08 1.02 6.66 -51.93 -0.35 0.68 16 40 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 41 H 0.33 4.43 8.32 -39.29 -0.33 4.10 16 42 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 1.28 7.83 -51.93 -0.41 0.88 16 45 H 0.05 1.29 7.99 -51.93 -0.41 0.88 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 1.34 8.05 -51.93 -0.42 0.93 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -27.65 353.84 -10.61 -38.26 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.99 Total: 2.06 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.31 Total: -27.09 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.38 Total: -35.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.65 -10.61 -38.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.143 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds