Wall clock time and date at job start Mon Mar 30 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29444 * 117.95715 * 2 1 4 4 C 1.50074 * 124.06845 * 180.46859 * 3 2 1 5 5 C 1.53016 * 110.15161 * 342.86075 * 4 3 2 6 6 C 1.53404 * 108.42555 * 49.45116 * 5 4 3 7 7 H 1.09004 * 109.64707 * 172.86857 * 6 5 4 8 8 C 1.52998 * 109.64110 * 52.23712 * 6 5 4 9 9 C 1.50069 * 117.96420 * 180.02562 * 2 1 3 10 10 H 1.08997 * 109.35549 * 283.08444 * 9 2 1 11 11 C 1.53003 * 109.35502 * 42.80023 * 9 2 1 12 12 N 1.46902 * 109.46988 * 181.25294 * 11 9 2 13 13 C 1.46897 * 110.99689 * 184.93636 * 12 11 9 14 14 H 1.08993 * 110.43759 * 325.69706 * 13 12 11 15 15 C 1.54262 * 110.48811 * 88.24633 * 13 12 11 16 16 C 1.54088 * 106.49905 * 142.19278 * 15 13 12 17 17 C 1.54277 * 106.61714 * 0.17132 * 16 15 13 18 18 H 1.08994 * 110.48331 * 94.95774 * 17 16 15 19 19 C 1.50700 * 110.59510 * 217.54503 * 17 16 15 20 20 H 1.07999 * 119.99494 * 114.84009 * 19 17 16 21 21 C 1.37871 * 120.00097 * 294.84175 * 19 17 16 22 22 N 1.31512 * 120.00222 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99964 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46983 * 119.99812 * 23 21 19 26 26 H 1.48499 * 109.47148 * 239.99906 * 23 21 19 27 27 C 1.54890 * 104.19514 * 336.27943 * 17 16 15 28 28 H 1.08999 * 109.47765 * 274.66032 * 1 2 3 29 29 H 1.08998 * 109.47053 * 34.66538 * 1 2 3 30 30 H 1.09005 * 109.46716 * 154.65865 * 1 2 3 31 31 H 1.07998 * 117.96537 * 0.48157 * 3 2 1 32 32 H 1.08995 * 109.35561 * 103.07352 * 4 3 2 33 33 H 1.09005 * 109.35230 * 222.78979 * 4 3 2 34 34 H 1.08994 * 109.64662 * 169.12441 * 5 4 3 35 35 H 1.09003 * 109.64484 * 289.76081 * 5 4 3 36 36 H 1.09000 * 109.47198 * 301.05835 * 8 6 5 37 37 H 1.08999 * 109.47084 * 61.05858 * 8 6 5 38 38 H 1.08996 * 109.47414 * 181.05888 * 8 6 5 39 39 H 1.08993 * 109.47518 * 301.25776 * 11 9 2 40 40 H 1.09001 * 109.46847 * 61.25961 * 11 9 2 41 41 H 1.00898 * 110.99820 * 60.97595 * 12 11 9 42 42 H 1.09004 * 110.03016 * 261.57034 * 15 13 12 43 43 H 1.08997 * 110.03529 * 22.99864 * 15 13 12 44 44 H 1.08998 * 110.11231 * 240.82894 * 16 15 13 45 45 H 1.09001 * 109.96850 * 119.42978 * 16 15 13 46 46 H 0.97001 * 120.00371 * 180.02562 * 22 21 19 47 47 H 1.09008 * 110.75339 * 279.62850 * 27 17 16 48 48 H 1.08993 * 110.75458 * 156.25914 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 3.6060 1.3032 -0.0102 5 6 4.2793 -0.0072 0.4033 6 6 3.6704 -1.1471 -0.4233 7 1 4.2211 -2.0693 -0.2374 8 6 3.7355 -0.7952 -1.9108 9 6 2.2107 -1.3255 -0.0006 10 1 2.1745 -1.7542 1.0009 11 6 1.5130 -2.2696 -0.9818 12 7 2.1815 -3.5775 -0.9623 13 6 1.6129 -4.4745 -1.9771 14 1 0.5447 -4.2907 -2.0919 15 6 2.3399 -4.2940 -3.3256 16 6 2.4525 -5.6968 -3.9533 17 6 1.7862 -6.6768 -2.9655 18 1 0.7461 -6.8492 -3.2423 19 6 2.5417 -7.9800 -2.9210 20 1 3.0420 -8.2833 -2.0132 21 6 2.5941 -8.7850 -4.0390 22 7 1.9853 -8.4155 -5.1446 23 14 3.5301 -10.4007 -3.9835 24 1 4.1221 -10.5838 -2.6340 25 1 2.6000 -11.5217 -4.2728 26 1 4.6126 -10.3809 -4.9999 27 6 1.8707 -5.9542 -1.5982 28 1 -0.3634 0.0835 1.0242 29 1 -0.3633 0.8452 -0.5845 30 1 -0.3633 -0.9288 -0.4399 31 1 1.5088 2.0379 0.0080 32 1 3.9332 1.5768 -1.0132 33 1 3.8899 2.0894 0.6895 34 1 5.3502 0.0540 0.2097 35 1 4.1054 -0.1899 1.4637 36 1 3.1913 0.1323 -2.0889 37 1 4.7762 -0.6689 -2.2091 38 1 3.2852 -1.5983 -2.4942 39 1 0.4697 -2.3904 -0.6904 40 1 1.5633 -1.8509 -1.9870 41 1 2.1346 -3.9938 -0.0444 42 1 1.7626 -3.6367 -3.9759 43 1 3.3339 -3.8782 -3.1612 44 1 3.5004 -5.9620 -4.0927 45 1 1.9312 -5.7192 -4.9103 46 1 2.0219 -8.9820 -5.9311 47 1 2.8611 -6.0735 -1.1587 48 1 1.0994 -6.3193 -0.9200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:50 Heat of formation + Delta-G solvation = -18.771722 kcal Electronic energy + Delta-G solvation = -22394.283315 eV Core-core repulsion = 19447.517160 eV Total energy + Delta-G solvation = -2946.766155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88335 -37.55703 -34.53012 -33.50550 -32.34767 -30.86214 -28.08593 -27.68629 -26.70215 -26.23934 -24.45950 -23.41902 -21.26783 -20.52955 -19.37772 -18.82459 -16.94262 -16.21456 -15.76697 -15.56710 -14.99909 -14.73955 -14.54034 -14.37776 -14.03728 -13.22468 -13.11151 -12.94207 -12.72723 -12.49258 -12.29160 -12.22858 -12.04582 -11.77579 -11.49025 -11.38415 -11.08319 -11.01151 -10.78482 -10.47628 -10.44869 -10.35296 -10.17512 -9.99527 -9.94234 -9.80696 -9.46149 -9.04767 -8.77427 -8.65572 -8.32550 -7.96303 -5.95557 -3.97632 2.17346 3.32875 3.40926 3.44957 4.39244 4.49457 4.65928 4.75542 4.83965 5.04594 5.22082 5.28237 5.34231 5.37059 5.42934 5.49501 5.54508 5.59543 5.59713 5.68926 5.74671 5.77893 5.83661 5.88813 5.96002 6.02608 6.04960 6.09284 6.18947 6.26797 6.38760 6.44319 6.56816 6.60460 6.70098 6.73153 6.85627 6.92213 6.94747 7.05621 7.24883 7.42322 7.61998 7.75079 7.82265 7.97857 8.08734 8.53122 9.05727 9.66075 11.14396 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.003409 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.808974 B = 8211.843232 C = 8446.246052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.164 4.164 4 C -0.087 4.087 5 C -0.119 4.119 6 C -0.072 4.072 7 H 0.083 0.917 8 C -0.148 4.148 9 C -0.043 4.043 10 H 0.073 0.927 11 C 0.062 3.938 12 N -0.679 5.679 13 C 0.081 3.919 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.096 4.096 17 C 0.051 3.949 18 H 0.027 0.973 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.115 4.115 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.334 0.666 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.258 0.742 47 H 0.065 0.935 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 18.662 9.992 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 C -0.182 4.182 4 C -0.124 4.124 5 C -0.156 4.156 6 C -0.091 4.091 7 H 0.101 0.899 8 C -0.206 4.206 9 C -0.061 4.061 10 H 0.092 0.908 11 C -0.067 4.067 12 N -0.310 5.310 13 C -0.028 4.028 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.135 4.135 17 C 0.032 3.968 18 H 0.045 0.955 19 C -0.549 4.549 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.153 4.153 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.152 0.848 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.524 18.812 9.394 21.033 hybrid contribution -0.491 -1.014 0.300 1.166 sum 0.033 17.797 9.693 20.266 Atomic orbital electron populations 1.21084 0.93036 1.02770 1.01761 1.20838 0.95392 0.94785 1.00147 1.21820 0.96121 0.96845 1.03379 1.20421 0.92724 0.97843 1.01440 1.21702 0.99348 0.94904 0.99668 1.20989 0.94596 0.98234 0.95238 0.89855 1.21928 1.01007 1.01665 0.95950 1.19970 0.94880 0.92205 0.99052 0.90845 1.22142 0.94432 0.90273 0.99823 1.60563 1.58205 1.03149 1.09053 1.22471 0.95153 0.92767 0.92419 0.94608 1.22294 0.99402 0.98977 0.94443 1.22101 1.00863 0.91423 0.99098 1.19380 0.96310 0.92746 0.88385 0.95455 1.21202 1.32317 1.03854 0.97484 0.92669 1.24985 0.95578 0.97831 0.95663 1.69983 1.43419 1.37591 1.01917 0.86610 0.79780 0.84036 0.78007 1.19809 1.21169 1.21110 1.22738 1.00171 0.92128 1.00301 0.91931 0.92187 0.91281 0.88431 0.90904 0.91901 0.91967 0.92230 0.93062 0.93503 0.91278 0.95567 0.90585 0.84824 0.94428 0.92100 0.93097 0.93131 0.93239 0.91671 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.70 36.01 0.35 -0.86 16 2 C -0.11 -1.15 5.08 -100.94 -0.51 -1.67 16 3 C -0.16 -1.60 8.72 -35.90 -0.31 -1.91 16 4 C -0.09 -0.80 5.48 -28.18 -0.15 -0.95 16 5 C -0.12 -1.16 5.65 -26.51 -0.15 -1.31 16 6 C -0.07 -0.81 2.60 -90.40 -0.23 -1.05 16 7 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 8 C -0.15 -1.76 7.90 37.16 0.29 -1.47 16 9 C -0.04 -0.47 2.33 -92.07 -0.21 -0.69 16 10 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 11 C 0.06 0.79 3.77 -3.82 -0.01 0.78 16 12 N -0.68 -9.89 5.74 -104.98 -0.60 -10.49 16 13 C 0.08 1.43 3.17 -66.05 -0.21 1.22 16 14 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 15 C -0.11 -2.17 6.50 -25.50 -0.17 -2.34 16 16 C -0.10 -2.28 5.61 -25.49 -0.14 -2.42 16 17 C 0.05 1.27 2.72 -90.11 -0.24 1.02 16 18 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.51 -14.12 8.37 -34.44 -0.29 -14.41 16 20 H 0.06 1.51 7.77 -52.49 -0.41 1.11 16 21 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 22 N -0.89 -25.94 12.63 55.43 0.70 -25.24 16 23 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.12 -2.36 5.67 -24.73 -0.14 -2.50 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 7.99 -51.93 -0.41 0.10 16 30 H 0.07 0.68 5.57 -51.93 -0.29 0.39 16 31 H 0.10 0.86 7.86 -52.49 -0.41 0.45 16 32 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.05 0.58 5.67 -51.93 -0.29 0.29 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.94 6.21 -51.93 -0.32 0.62 16 39 H 0.03 0.33 6.18 -51.93 -0.32 0.01 16 40 H 0.08 1.05 6.23 -51.93 -0.32 0.72 16 41 H 0.33 4.59 8.49 -39.29 -0.33 4.26 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 44 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 45 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.06 1.36 8.05 -51.92 -0.42 0.94 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -27.87 356.04 -10.69 -38.56 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.90 Total: 2.25 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.24 Total: -26.94 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.10 Total: -35.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.87 -10.69 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.789 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds