Wall clock time and date at job start Mon Mar 30 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29444 * 117.95715 * 2 1 4 4 C 1.50074 * 124.06845 * 180.46859 * 3 2 1 5 5 C 1.53016 * 110.15161 * 342.86075 * 4 3 2 6 6 C 1.53404 * 108.42555 * 49.45116 * 5 4 3 7 7 H 1.09004 * 109.64707 * 172.86857 * 6 5 4 8 8 C 1.52998 * 109.64110 * 52.23712 * 6 5 4 9 9 C 1.50069 * 117.96420 * 180.02562 * 2 1 3 10 10 H 1.08997 * 109.35549 * 283.08444 * 9 2 1 11 11 C 1.53003 * 109.35502 * 42.80023 * 9 2 1 12 12 N 1.46902 * 109.46988 * 181.25294 * 11 9 2 13 13 C 1.46897 * 110.99689 * 184.93636 * 12 11 9 14 14 H 1.08993 * 110.43759 * 325.69706 * 13 12 11 15 15 C 1.54262 * 110.48811 * 88.24633 * 13 12 11 16 16 C 1.54088 * 106.49905 * 142.19278 * 15 13 12 17 17 C 1.54277 * 106.61714 * 0.17132 * 16 15 13 18 18 H 1.08994 * 110.48331 * 94.95774 * 17 16 15 19 19 C 1.50700 * 110.59510 * 217.54503 * 17 16 15 20 20 H 1.07999 * 119.99494 * 114.84009 * 19 17 16 21 21 C 1.37871 * 120.00097 * 294.84175 * 19 17 16 22 22 N 1.31512 * 120.00222 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99964 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46983 * 119.99812 * 23 21 19 26 26 H 1.48499 * 109.47148 * 239.99906 * 23 21 19 27 27 C 1.54890 * 104.19514 * 336.27943 * 17 16 15 28 28 H 1.08999 * 109.47765 * 274.66032 * 1 2 3 29 29 H 1.08998 * 109.47053 * 34.66538 * 1 2 3 30 30 H 1.09005 * 109.46716 * 154.65865 * 1 2 3 31 31 H 1.07998 * 117.96537 * 0.48157 * 3 2 1 32 32 H 1.08995 * 109.35561 * 103.07352 * 4 3 2 33 33 H 1.09005 * 109.35230 * 222.78979 * 4 3 2 34 34 H 1.08994 * 109.64662 * 169.12441 * 5 4 3 35 35 H 1.09003 * 109.64484 * 289.76081 * 5 4 3 36 36 H 1.09000 * 109.47198 * 301.05835 * 8 6 5 37 37 H 1.08999 * 109.47084 * 61.05858 * 8 6 5 38 38 H 1.08996 * 109.47414 * 181.05888 * 8 6 5 39 39 H 1.08993 * 109.47518 * 301.25776 * 11 9 2 40 40 H 1.09001 * 109.46847 * 61.25961 * 11 9 2 41 41 H 1.00898 * 110.99820 * 60.97595 * 12 11 9 42 42 H 1.09004 * 110.03016 * 261.57034 * 15 13 12 43 43 H 1.08997 * 110.03529 * 22.99864 * 15 13 12 44 44 H 1.08998 * 110.11231 * 240.82894 * 16 15 13 45 45 H 1.09001 * 109.96850 * 119.42978 * 16 15 13 46 46 H 0.97001 * 120.00371 * 180.02562 * 22 21 19 47 47 H 1.09008 * 110.75339 * 279.62850 * 27 17 16 48 48 H 1.08993 * 110.75458 * 156.25914 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 3.6060 1.3032 -0.0102 5 6 4.2793 -0.0072 0.4033 6 6 3.6704 -1.1471 -0.4233 7 1 4.2211 -2.0693 -0.2374 8 6 3.7355 -0.7952 -1.9108 9 6 2.2107 -1.3255 -0.0006 10 1 2.1745 -1.7542 1.0009 11 6 1.5130 -2.2696 -0.9818 12 7 2.1815 -3.5775 -0.9623 13 6 1.6129 -4.4745 -1.9771 14 1 0.5447 -4.2907 -2.0919 15 6 2.3399 -4.2940 -3.3256 16 6 2.4525 -5.6968 -3.9533 17 6 1.7862 -6.6768 -2.9655 18 1 0.7461 -6.8492 -3.2423 19 6 2.5417 -7.9800 -2.9210 20 1 3.0420 -8.2833 -2.0132 21 6 2.5941 -8.7850 -4.0390 22 7 1.9853 -8.4155 -5.1446 23 14 3.5301 -10.4007 -3.9835 24 1 4.1221 -10.5838 -2.6340 25 1 2.6000 -11.5217 -4.2728 26 1 4.6126 -10.3809 -4.9999 27 6 1.8707 -5.9542 -1.5982 28 1 -0.3634 0.0835 1.0242 29 1 -0.3633 0.8452 -0.5845 30 1 -0.3633 -0.9288 -0.4399 31 1 1.5088 2.0379 0.0080 32 1 3.9332 1.5768 -1.0132 33 1 3.8899 2.0894 0.6895 34 1 5.3502 0.0540 0.2097 35 1 4.1054 -0.1899 1.4637 36 1 3.1913 0.1323 -2.0889 37 1 4.7762 -0.6689 -2.2091 38 1 3.2852 -1.5983 -2.4942 39 1 0.4697 -2.3904 -0.6904 40 1 1.5633 -1.8509 -1.9870 41 1 2.1346 -3.9938 -0.0444 42 1 1.7626 -3.6367 -3.9759 43 1 3.3339 -3.8782 -3.1612 44 1 3.5004 -5.9620 -4.0927 45 1 1.9312 -5.7192 -4.9103 46 1 2.0219 -8.9820 -5.9311 47 1 2.8611 -6.0735 -1.1587 48 1 1.0994 -6.3193 -0.9200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:49 Heat of formation + Delta-G solvation = -32.103645 kcal Electronic energy + Delta-G solvation = -22394.861431 eV Core-core repulsion = 19447.517160 eV Total energy + Delta-G solvation = -2947.344271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76674 -39.12786 -35.93729 -34.31231 -34.15603 -32.04513 -29.89275 -28.89216 -27.68298 -27.37081 -25.81565 -25.05795 -22.19570 -21.41104 -21.04422 -20.57830 -18.33794 -17.70969 -16.89473 -16.57636 -16.52396 -16.25189 -15.77303 -15.50767 -15.24899 -14.55647 -14.10496 -14.03696 -13.90823 -13.78065 -13.55383 -13.50549 -13.03416 -12.98787 -12.85215 -12.69145 -12.59463 -12.32115 -12.26804 -12.04647 -11.84618 -11.75875 -11.60734 -11.38649 -11.24372 -11.00354 -10.86548 -10.79682 -10.72357 -10.46809 -9.54025 -9.18268 -8.10957 -6.20188 1.40095 1.41651 1.41910 1.53444 2.44332 3.20116 3.28088 3.83919 3.88917 3.92248 4.04494 4.12373 4.25167 4.35430 4.43181 4.49791 4.52600 4.63598 4.67962 4.69591 4.73927 4.80226 4.83120 4.90073 4.92580 5.01183 5.04879 5.08710 5.13020 5.18538 5.19485 5.20321 5.23790 5.31349 5.32571 5.43010 5.47105 5.51847 5.57426 5.67210 5.69648 5.90928 5.92771 6.00403 6.17502 6.30189 6.42654 6.61753 6.91781 7.47163 8.98613 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.003409 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.808974 B = 8211.843232 C = 8446.246052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C -0.161 4.161 4 C -0.088 4.088 5 C -0.116 4.116 6 C -0.072 4.072 7 H 0.068 0.932 8 C -0.143 4.143 9 C -0.036 4.036 10 H 0.075 0.925 11 C 0.067 3.933 12 N -0.676 5.676 13 C 0.097 3.903 14 H 0.039 0.961 15 C -0.101 4.101 16 C -0.087 4.087 17 C 0.040 3.960 18 H -0.004 1.004 19 C -0.528 4.528 20 H 0.054 0.946 21 C 0.009 3.991 22 N -0.922 5.922 23 Si 0.953 3.047 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.343 0.657 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 20.025 11.486 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 C -0.179 4.179 4 C -0.125 4.125 5 C -0.153 4.153 6 C -0.090 4.090 7 H 0.086 0.914 8 C -0.201 4.201 9 C -0.054 4.054 10 H 0.093 0.907 11 C -0.062 4.062 12 N -0.307 5.307 13 C -0.013 4.013 14 H 0.057 0.943 15 C -0.139 4.139 16 C -0.126 4.126 17 C 0.021 3.979 18 H 0.014 0.986 19 C -0.567 4.567 20 H 0.072 0.928 21 C -0.190 4.190 22 N -0.562 5.562 23 Si 0.779 3.221 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.142 4.142 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.908 20.184 10.909 22.962 hybrid contribution -0.614 -1.415 -0.172 1.552 sum 0.294 18.769 10.736 21.625 Atomic orbital electron populations 1.21070 0.92366 1.02692 1.02329 1.20862 0.95953 0.94435 1.01308 1.22010 0.96615 0.97054 1.02204 1.20458 0.92289 0.97822 1.01934 1.21673 0.99649 0.94577 0.99423 1.20953 0.94694 0.98277 0.95112 0.91350 1.21868 1.00983 1.01108 0.96096 1.19880 0.94652 0.92423 0.98492 0.90692 1.22136 0.94836 0.89290 0.99925 1.60456 1.58137 1.03335 1.08765 1.22158 0.95147 0.91643 0.92310 0.94326 1.22146 1.00289 0.96122 0.95341 1.21899 0.98590 0.94077 0.98024 1.19382 0.94153 0.92898 0.91482 0.98553 1.21578 1.32451 1.05161 0.97466 0.92821 1.25791 0.96513 1.01320 0.95345 1.70109 1.44660 1.38889 1.02499 0.85580 0.78458 0.79815 0.78264 1.18945 1.20677 1.20761 1.22551 1.00366 0.93504 0.97769 0.91177 0.91487 0.91994 0.87282 0.90746 0.90432 0.91433 0.92019 0.92550 0.93313 0.93220 0.94940 0.91502 0.83863 0.93163 0.91551 0.95484 0.95715 0.93212 0.91968 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.70 71.24 0.69 -1.42 16 2 C -0.13 -2.31 5.08 -15.10 -0.08 -2.39 16 3 C -0.16 -2.72 8.72 27.04 0.24 -2.48 16 4 C -0.09 -1.37 5.48 29.66 0.16 -1.21 16 5 C -0.12 -2.00 5.65 30.74 0.17 -1.83 16 6 C -0.07 -1.50 2.60 -10.65 -0.03 -1.53 16 7 H 0.07 1.64 7.95 -2.38 -0.02 1.62 16 8 C -0.14 -3.21 7.90 71.98 0.57 -2.64 16 9 C -0.04 -0.73 2.33 -11.73 -0.03 -0.76 16 10 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 11 C 0.07 1.59 3.77 86.30 0.33 1.91 16 12 N -0.68 -18.67 5.74 -486.04 -2.79 -21.46 16 13 C 0.10 3.34 3.17 45.99 0.15 3.49 16 14 H 0.04 1.33 7.89 -2.39 -0.02 1.31 16 15 C -0.10 -3.85 6.50 31.39 0.20 -3.65 16 16 C -0.09 -4.25 5.61 31.40 0.18 -4.07 16 17 C 0.04 2.04 2.72 -10.46 -0.03 2.01 16 18 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 19 C -0.53 -29.77 8.37 25.60 0.21 -29.56 16 20 H 0.05 2.96 7.77 -2.91 -0.02 2.94 16 21 C 0.01 0.49 5.35 84.65 0.45 0.94 16 22 N -0.92 -55.09 12.63 21.44 0.27 -54.82 16 23 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 C -0.10 -4.22 5.67 31.89 0.18 -4.03 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.00 7.99 -2.39 -0.02 0.98 16 30 H 0.06 1.10 5.57 -2.38 -0.01 1.08 16 31 H 0.11 1.60 7.86 -2.91 -0.02 1.58 16 32 H 0.07 1.16 6.91 -2.39 -0.02 1.14 16 33 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.06 1.18 5.67 -2.39 -0.01 1.17 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.30 6.21 -2.39 -0.01 1.29 16 39 H 0.03 0.75 6.18 -2.39 -0.01 0.74 16 40 H 0.07 1.74 6.23 -2.39 -0.01 1.72 16 41 H 0.34 8.77 8.49 -89.70 -0.76 8.00 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 2.47 7.95 -2.39 -0.02 2.45 16 44 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 45 H 0.02 1.28 8.06 -2.39 -0.02 1.26 16 46 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.06 2.56 8.05 -2.38 -0.02 2.54 16 48 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -60.29 356.04 3.03 -57.26 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.15 Total: 19.65 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.37 Total: -47.22 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.52 Total: -76.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.29 3.03 -57.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.155 kcal (2) G-P(sol) polarization free energy of solvation -60.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds