Wall clock time and date at job start Mon Mar 30 2020 07:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 C 1.53001 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47435 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47391 * 180.02562 * 6 5 4 8 8 C 1.36844 * 119.99809 * 264.57895 * 7 6 5 9 9 H 1.08005 * 119.99888 * 140.50897 * 8 7 6 10 10 C 1.38800 * 120.00141 * 320.50884 * 8 7 6 11 11 N 1.31595 * 119.99819 * 340.69732 * 10 8 7 12 12 Si 1.86801 * 119.99747 * 160.70086 * 10 8 7 13 13 H 1.48502 * 109.47203 * 59.99963 * 12 10 8 14 14 H 1.48502 * 109.46903 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47047 * 299.99898 * 12 10 8 16 16 C 1.39301 * 119.99925 * 84.58148 * 7 6 5 17 17 C 1.39075 * 120.08848 * 179.97438 * 16 7 6 18 18 C 1.38050 * 119.91329 * 179.97438 * 17 16 7 19 19 C 1.38329 * 120.08632 * 0.02562 * 18 17 16 20 20 C 1.38331 * 120.17982 * 359.97438 * 19 18 17 21 21 C 1.38049 * 120.08981 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.47071 * 59.99742 * 1 2 3 23 23 H 1.08995 * 109.47365 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47419 * 300.00630 * 1 2 3 25 25 H 1.09007 * 109.47313 * 240.00048 * 2 1 3 26 26 H 1.08998 * 109.47078 * 120.00630 * 2 1 3 27 27 H 1.09001 * 109.46941 * 60.00187 * 3 2 1 28 28 H 1.09002 * 109.47266 * 299.99658 * 3 2 1 29 29 H 1.09001 * 109.47094 * 60.00333 * 4 3 2 30 30 H 1.08996 * 109.47151 * 299.99577 * 4 3 2 31 31 H 1.09002 * 109.47455 * 60.00138 * 5 4 3 32 32 H 1.09005 * 109.47202 * 300.00231 * 5 4 3 33 33 H 1.09007 * 109.47313 * 60.00048 * 6 5 4 34 34 H 1.09005 * 109.47071 * 300.00258 * 6 5 4 35 35 H 0.97002 * 119.99344 * 180.02562 * 11 10 8 36 36 H 1.08008 * 120.04595 * 359.70293 * 17 16 7 37 37 H 1.07992 * 119.95864 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.91294 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.95642 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.04409 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 7 6.0985 4.2660 0.0000 8 6 6.4321 4.8737 -1.1798 9 1 6.1817 5.9117 -1.3423 10 6 7.0923 4.1562 -2.1677 11 7 7.7292 3.0464 -1.8604 12 14 7.0768 4.7661 -3.9333 13 1 7.6942 6.1152 -3.9964 14 1 7.8478 3.8278 -4.7878 15 1 5.6755 4.8398 -4.4192 16 6 6.2233 4.9606 1.2010 17 6 6.6872 6.2717 1.2032 18 6 6.8090 6.9569 2.3955 19 6 6.4707 6.3409 3.5869 20 6 6.0089 5.0370 3.5891 21 6 5.8832 4.3453 2.4010 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 3.9337 0.9284 -0.8891 30 1 3.9330 0.9287 0.8909 31 1 3.7165 3.3993 0.8895 32 1 3.7171 3.3982 -0.8905 33 1 5.9735 2.3706 -0.8898 34 1 5.9734 2.3713 0.8902 35 1 8.1909 2.5452 -2.5508 36 1 6.9561 6.7518 0.2738 37 1 7.1696 7.9748 2.3981 38 1 6.5675 6.8794 4.5181 39 1 5.7454 4.5597 4.5214 40 1 5.5229 3.3271 2.4035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000473111362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:43 Heat of formation + Delta-G solvation = -7.299327 kcal Electronic energy + Delta-G solvation = -17799.123076 eV Core-core repulsion = 15191.241117 eV Total energy + Delta-G solvation = -2607.881959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22500 -37.85137 -36.70946 -34.11870 -33.26301 -31.47944 -30.05507 -28.88286 -26.43126 -24.62281 -22.95162 -22.30091 -21.85471 -21.43699 -19.00704 -18.23580 -16.73640 -16.72040 -16.17539 -15.80657 -15.33884 -15.01334 -14.67467 -14.63121 -14.22899 -13.95924 -13.88700 -13.38193 -13.25880 -13.11325 -12.82477 -12.66562 -12.40224 -12.19194 -12.14332 -11.93856 -11.80304 -11.60129 -11.55250 -11.35613 -11.23504 -10.95768 -10.22668 -9.54156 -8.48404 -7.96518 -5.86034 0.85962 1.06039 1.39915 1.44753 1.49440 2.28762 2.92268 3.22348 3.38747 3.94713 3.99827 4.19398 4.24443 4.34253 4.39913 4.53906 4.56352 4.59387 4.63907 4.82843 4.89317 4.92581 4.99089 5.01341 5.04703 5.11246 5.18740 5.21619 5.31632 5.34414 5.43945 5.48364 5.48797 5.51472 5.60097 5.89831 5.92642 6.02909 6.18870 6.51637 6.84635 7.50070 7.87428 8.74463 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.007859 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.336508 B = 3562.067339 C = 5420.972377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.107 4.107 5 C -0.118 4.118 6 C 0.128 3.872 7 N -0.472 5.472 8 C -0.326 4.326 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.899 5.899 12 Si 0.977 3.023 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.269 1.269 16 C 0.195 3.805 17 C -0.235 4.235 18 C -0.074 4.074 19 C -0.229 4.229 20 C -0.070 4.070 21 C -0.245 4.245 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -2.869 4.635 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.157 4.157 6 C 0.004 3.996 7 N -0.162 5.162 8 C -0.455 4.455 9 H 0.091 0.909 10 C -0.208 4.208 11 N -0.536 5.536 12 Si 0.801 3.199 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.194 1.194 16 C 0.083 3.917 17 C -0.259 4.259 18 C -0.093 4.093 19 C -0.250 4.250 20 C -0.088 4.088 21 C -0.269 4.269 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.032 -3.177 4.267 10.482 hybrid contribution 0.435 0.225 -1.136 1.237 sum -8.597 -2.952 3.131 9.614 Atomic orbital electron populations 1.21764 0.95031 1.02088 1.01875 1.21528 0.96529 0.95919 1.02109 1.21571 0.94159 0.97598 1.01783 1.21462 0.96229 0.95093 1.01777 1.21859 0.95666 0.97550 1.00645 1.21319 0.92792 0.84018 1.01480 1.42504 1.59820 1.11660 1.02216 1.19362 1.35923 0.97794 0.92418 0.90895 1.26153 0.93797 0.97041 1.03842 1.70116 1.30707 1.18052 1.34723 0.85235 0.78507 0.78271 0.77878 1.19374 1.20548 1.19430 1.18654 0.93351 0.92708 0.87025 1.20651 1.11590 0.95149 0.98505 1.21018 0.97069 0.99224 0.91944 1.20884 1.09867 0.96460 0.97781 1.21011 0.96464 0.94563 0.96809 1.20662 1.13728 1.00637 0.91889 0.92917 0.91829 0.92529 0.92248 0.91655 0.91935 0.92691 0.92775 0.91604 0.92924 0.93904 0.90677 0.93957 0.92277 0.88387 0.85300 0.84854 0.84627 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.60 5.93 30.59 0.18 -2.42 16 3 C -0.11 -2.90 5.21 30.59 0.16 -2.74 16 4 C -0.11 -3.31 5.21 30.59 0.16 -3.16 16 5 C -0.12 -4.59 5.42 30.59 0.17 -4.42 16 6 C 0.13 5.97 4.57 86.38 0.39 6.36 16 7 N -0.47 -24.39 2.62 -511.83 -1.34 -25.73 16 8 C -0.33 -17.77 8.40 84.05 0.71 -17.06 16 9 H 0.07 3.98 6.94 -2.91 -0.02 3.96 16 10 C -0.01 -0.36 4.93 84.86 0.42 0.06 16 11 N -0.90 -49.99 11.56 21.65 0.25 -49.74 16 12 Si 0.98 42.12 29.59 68.60 2.03 44.15 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 16 C 0.19 9.46 6.49 38.36 0.25 9.71 16 17 C -0.24 -10.91 9.26 22.43 0.21 -10.71 16 18 C -0.07 -2.83 10.04 22.25 0.22 -2.60 16 19 C -0.23 -7.94 10.04 22.31 0.22 -7.72 16 20 C -0.07 -2.50 10.04 22.25 0.22 -2.28 16 21 C -0.25 -10.39 8.80 22.43 0.20 -10.20 16 22 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.02 7.63 -2.39 -0.02 2.00 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.08 3.88 5.67 -2.38 -0.01 3.87 16 34 H 0.04 1.93 6.50 -2.38 -0.02 1.92 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.10 4.78 6.50 -2.91 -0.02 4.76 16 37 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.11 4.47 6.07 -2.91 -0.02 4.45 16 Total: -1.00 -59.36 322.58 6.14 -53.21 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.98 Total: 27.25 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 4.22 Total: -49.14 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.09 Total: -75.47 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -59.36 6.14 -53.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000473111362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.914 kcal (2) G-P(sol) polarization free energy of solvation -59.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds