Wall clock time and date at job start Mon Mar 30 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48497 * 109.46802 * 269.99786 * 3 2 1 5 5 H 1.48493 * 109.47052 * 30.00083 * 3 2 1 6 6 H 1.48506 * 109.46804 * 150.00445 * 3 2 1 7 7 C 1.37879 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99485 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00338 * 179.97438 * 7 2 1 10 10 O 1.42098 * 102.99777 * 66.14643 * 9 7 2 11 11 C 1.81401 * 102.99833 * 179.97438 * 9 7 2 12 12 C 1.50709 * 109.46890 * 179.97438 * 11 9 7 13 13 C 1.38267 * 119.97783 * 90.00511 * 12 11 9 14 14 C 1.38200 * 120.03416 * 180.30118 * 13 12 11 15 15 C 1.38350 * 120.00162 * 359.44093 * 14 13 12 16 16 Cl 1.73599 * 120.01871 * 180.27881 * 15 14 13 17 17 C 1.38437 * 119.95862 * 0.55338 * 15 14 13 18 18 Cl 1.73607 * 120.02020 * 179.74487 * 17 15 14 19 19 C 1.38203 * 119.97978 * 270.02344 * 12 11 9 20 20 H 0.97000 * 119.99719 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47299 * 60.00661 * 11 9 7 22 22 H 1.08997 * 109.47501 * 299.99703 * 11 9 7 23 23 H 1.08002 * 119.97972 * 0.02562 * 13 12 11 24 24 H 1.08002 * 119.99631 * 179.72231 * 14 13 12 25 25 H 1.07997 * 120.00079 * 359.95448 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.0866 -0.6345 1.2651 11 6 4.1745 -2.9617 -0.0010 12 6 5.6720 -3.1315 -0.0022 13 6 6.3594 -3.2091 1.1950 14 6 7.7333 -3.3587 1.1953 15 6 8.4203 -3.4424 -0.0027 16 17 10.1453 -3.6375 -0.0028 17 6 7.7319 -3.3648 -1.2013 18 17 8.5932 -3.4631 -2.7054 19 6 6.3572 -3.2093 -1.1998 20 1 -0.4850 0.8401 -0.0004 21 1 3.7553 -3.4314 -0.8907 22 1 3.7560 -3.4311 0.8893 23 1 5.8229 -3.1484 2.1303 24 1 8.2701 -3.4147 2.1307 25 1 5.8196 -3.1490 -2.1345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526858285.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:40 Heat of formation + Delta-G solvation = -38.164880 kcal Electronic energy + Delta-G solvation = -14457.142026 eV Core-core repulsion = 11613.679971 eV Total energy + Delta-G solvation = -2843.462055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42692 -36.61023 -36.52831 -34.09113 -32.86141 -32.33757 -30.85128 -26.82343 -25.98472 -22.91872 -21.61145 -18.14817 -17.12306 -15.99400 -15.86774 -15.56180 -15.37259 -14.13103 -13.95099 -13.79626 -13.39940 -12.94598 -12.80996 -12.36679 -11.91148 -11.75610 -11.66523 -11.41316 -11.18219 -10.97615 -10.87870 -10.79345 -10.72017 -9.99591 -9.08676 -9.04353 -8.84251 -8.20038 -7.08259 -6.63944 -4.92490 0.98625 1.13629 1.83036 2.20002 2.89091 3.06733 3.24273 3.36732 3.68669 4.04813 4.54355 4.65250 4.72460 4.97015 5.14961 5.23928 5.31240 5.49400 5.69697 5.93796 6.02531 6.12463 6.31842 6.58709 6.69417 7.61604 8.31741 8.87892 10.46308 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.004700 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.696825 B = 5955.843704 C = 6138.580689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.808 3.192 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.211 1.211 7 C -0.818 4.818 8 H 0.096 0.904 9 S 1.284 4.716 10 O -0.906 6.906 11 C -0.423 4.423 12 C -0.020 4.020 13 C -0.102 4.102 14 C -0.093 4.093 15 C -0.047 4.047 16 Cl -0.062 7.062 17 C -0.024 4.024 18 Cl -0.057 7.057 19 C -0.106 4.106 20 H 0.276 0.724 21 H 0.117 0.883 22 H 0.091 0.909 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.516 -6.115 -5.104 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.081 4.081 3 Si 0.628 3.372 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.133 1.133 7 C -0.960 4.960 8 H 0.114 0.886 9 S 1.486 4.514 10 O -0.900 6.900 11 C -0.553 4.553 12 C -0.021 4.021 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.075 4.075 16 Cl -0.034 7.034 17 C -0.052 4.052 18 Cl -0.028 7.028 19 C -0.125 4.125 20 H 0.086 0.914 21 H 0.135 0.865 22 H 0.110 0.890 23 H 0.155 0.845 24 H 0.157 0.843 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.225 -5.314 -5.198 17.847 hybrid contribution -0.868 -0.374 1.696 1.941 sum 15.357 -5.688 -3.503 16.747 Atomic orbital electron populations 1.70006 1.06802 1.28590 1.42283 1.24601 0.94465 0.99208 0.89852 0.87712 0.84679 0.83990 0.80781 1.17808 1.18702 1.13326 1.27277 1.07989 0.99529 1.61177 0.88556 1.69520 0.91053 0.82325 1.08525 1.92930 1.84131 1.66458 1.46521 1.26981 0.93770 1.27084 1.07453 1.19504 0.95213 0.95238 0.92193 1.21234 0.93269 0.98699 0.98968 1.20974 0.94172 0.99721 0.96334 1.20657 0.85221 1.08036 0.93604 1.98361 1.10230 1.95864 1.98903 1.20689 0.92620 1.05756 0.86120 1.98371 1.76827 1.96570 1.31067 1.20991 0.90931 1.01138 0.99483 0.91409 0.86474 0.89006 0.84544 0.84299 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.20 13.96 55.43 0.77 -23.43 15 2 C 0.13 3.68 5.47 -17.82 -0.10 3.58 15 3 Si 0.81 19.01 27.29 -169.99 -4.64 14.37 15 4 H -0.25 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.26 -6.14 7.11 56.52 0.40 -5.73 15 6 H -0.21 -5.16 5.57 56.52 0.31 -4.85 15 7 C -0.82 -21.71 9.94 30.60 0.30 -21.41 15 8 H 0.10 2.71 8.06 -52.48 -0.42 2.29 15 9 S 1.28 27.54 11.74 -107.50 -1.26 26.28 15 10 O -0.91 -24.17 15.65 -35.23 -0.55 -24.73 15 11 C -0.42 -7.30 6.01 36.01 0.22 -7.08 15 12 C -0.02 -0.30 5.14 -104.62 -0.54 -0.84 15 13 C -0.10 -1.54 9.70 -39.58 -0.38 -1.93 15 14 C -0.09 -1.23 9.83 -39.55 -0.39 -1.62 15 15 C -0.05 -0.62 6.32 -39.47 -0.25 -0.87 15 16 Cl -0.06 -0.74 27.96 -51.86 -1.45 -2.19 15 17 C -0.02 -0.32 6.32 -39.47 -0.25 -0.57 15 18 Cl -0.06 -0.68 27.96 -51.86 -1.45 -2.13 15 19 C -0.11 -1.41 9.48 -39.55 -0.38 -1.78 15 20 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 21 H 0.12 1.73 8.08 -51.92 -0.42 1.31 15 22 H 0.09 1.70 8.09 -51.93 -0.42 1.28 15 23 H 0.14 2.08 8.06 -52.49 -0.42 1.66 15 24 H 0.14 1.52 8.06 -52.49 -0.42 1.09 15 25 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 LS Contribution 269.28 15.07 4.06 4.06 Total: -1.00 -32.03 269.28 -8.03 -40.06 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -1.75 Total: 0.22 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -1.76 Total: -32.52 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.77 Total: -23.43 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.55 Total: -24.73 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.64 Total: 14.37 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -1.26 Total: 26.28 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.90 Total: -4.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.03 -8.03 -40.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526858285.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.899 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds