Wall clock time and date at job start Mon Mar 30 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42098 * 102.99788 * 293.57207 * 9 7 2 11 11 C 1.81402 * 102.99699 * 179.72079 * 9 7 2 12 12 C 1.50699 * 109.46804 * 179.97438 * 11 9 7 13 13 C 1.38246 * 119.99801 * 269.72567 * 12 11 9 14 14 C 1.38198 * 120.02541 * 179.72700 * 13 12 11 15 15 C 1.38375 * 120.01458 * 0.54969 * 14 13 12 16 16 Cl 1.73600 * 120.00707 * 179.74534 * 15 14 13 17 17 C 1.38305 * 119.98807 * 359.72205 * 15 14 13 18 18 C 1.38340 * 119.99426 * 90.00403 * 12 11 9 19 19 Cl 1.73608 * 120.00596 * 0.02562 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47263 * 299.99687 * 11 9 7 22 22 H 1.09002 * 109.47511 * 60.00068 * 11 9 7 23 23 H 1.07996 * 119.98017 * 359.97438 * 13 12 11 24 24 H 1.08001 * 119.98575 * 180.26980 * 14 13 12 25 25 H 1.08001 * 120.01348 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4786 -2.7225 1.2599 11 6 2.4501 -3.9572 -0.0118 12 6 1.8484 -5.3388 -0.0174 13 6 1.5779 -5.9798 1.1773 14 6 1.0209 -7.2445 1.1728 15 6 0.7441 -7.8747 -0.0276 16 17 0.0505 -9.4662 -0.0329 17 6 1.0196 -7.2363 -1.2231 18 6 1.5720 -5.9679 -1.2181 19 17 1.9190 -5.1662 -2.7183 20 1 -0.4850 0.8401 -0.0004 21 1 3.0663 -3.8253 -0.9011 22 1 3.0662 -3.8332 0.8788 23 1 1.7983 -5.4902 2.1143 24 1 0.8058 -7.7429 2.1065 25 1 0.8033 -7.7277 -2.1603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868340.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:22 Heat of formation + Delta-G solvation = -67.230535 kcal Electronic energy + Delta-G solvation = -14544.968294 eV Core-core repulsion = 11700.245858 eV Total energy + Delta-G solvation = -2844.722436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51423 -37.73464 -37.23042 -35.85093 -34.92492 -33.57930 -31.92414 -28.29743 -27.56628 -23.98346 -22.75248 -20.07189 -18.30735 -17.56626 -17.16382 -17.01403 -16.48241 -15.63191 -15.31505 -14.96747 -14.72199 -14.41394 -14.27725 -13.61244 -13.25204 -13.10736 -12.96470 -12.89068 -12.67872 -12.35826 -12.10302 -12.04151 -11.93918 -11.71980 -11.13086 -10.65702 -9.96730 -9.58754 -8.83123 -8.39469 -6.97890 -0.09626 0.06020 0.84583 1.27915 1.31333 1.33300 1.46506 1.69507 2.22946 2.49209 2.77234 3.21439 3.60933 3.74138 3.86860 3.98970 4.17193 4.29477 4.57118 4.69878 4.84809 4.97015 5.08274 5.31911 5.37598 5.52971 6.06134 6.95961 8.41162 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.004913 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.344684 B = 5697.281394 C = 6138.080800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.279 1.279 7 C -0.853 4.853 8 H 0.083 0.917 9 S 1.364 4.636 10 O -0.962 6.962 11 C -0.434 4.434 12 C -0.044 4.044 13 C -0.115 4.115 14 C -0.095 4.095 15 C -0.039 4.039 16 Cl -0.049 7.049 17 C -0.091 4.091 18 C -0.034 4.034 19 Cl -0.043 7.043 20 H 0.288 0.712 21 H 0.134 0.866 22 H 0.074 0.926 23 H 0.127 0.873 24 H 0.159 0.841 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -14.362 -6.339 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.145 4.145 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.173 1.173 6 H -0.204 1.204 7 C -0.993 4.993 8 H 0.102 0.898 9 S 1.566 4.434 10 O -0.957 6.957 11 C -0.565 4.565 12 C -0.046 4.046 13 C -0.134 4.134 14 C -0.114 4.114 15 C -0.066 4.066 16 Cl -0.020 7.020 17 C -0.110 4.110 18 C -0.063 4.063 19 Cl -0.014 7.014 20 H 0.098 0.902 21 H 0.152 0.848 22 H 0.093 0.907 23 H 0.145 0.855 24 H 0.176 0.824 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.336 -14.512 -6.457 15.939 hybrid contribution 1.784 1.369 1.991 3.003 sum 3.120 -13.142 -4.466 14.227 Atomic orbital electron populations 1.69981 1.07995 1.30657 1.43567 1.25764 0.95431 1.03837 0.89491 0.85360 0.79244 0.77122 0.79009 1.18438 1.17281 1.20448 1.27836 1.02395 1.07525 1.61562 0.89826 1.68729 0.84817 0.84037 1.05780 1.92712 1.67354 1.86861 1.48798 1.27057 1.16372 1.05763 1.07347 1.19342 0.98111 0.94533 0.92656 1.21099 0.99684 0.95034 0.97607 1.21274 0.97597 0.94119 0.98407 1.20732 1.02695 0.88898 0.94314 1.98368 1.82761 1.22021 1.98897 1.21077 0.98266 0.92568 0.99067 1.20628 1.04123 0.94289 0.87215 1.98372 1.93405 1.79458 1.30127 0.90242 0.84800 0.90669 0.85512 0.82362 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.81 13.15 21.45 0.28 -50.53 15 2 C 0.07 3.55 5.46 84.66 0.46 4.02 15 3 Si 0.97 41.61 29.54 68.60 2.03 43.64 15 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 5 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.85 -46.53 9.38 67.74 0.64 -45.89 15 8 H 0.08 4.36 7.81 -2.91 -0.02 4.34 15 9 S 1.36 67.64 12.96 -56.49 -0.73 66.91 15 10 O -0.96 -59.74 17.82 -148.98 -2.66 -62.39 15 11 C -0.43 -16.96 5.62 71.24 0.40 -16.56 15 12 C -0.04 -1.51 5.14 -19.84 -0.10 -1.62 15 13 C -0.11 -3.73 9.70 22.26 0.22 -3.51 15 14 C -0.10 -2.49 9.83 22.29 0.22 -2.28 15 15 C -0.04 -0.94 6.32 22.32 0.14 -0.80 15 16 Cl -0.05 -0.99 28.96 -2.72 -0.08 -1.07 15 17 C -0.09 -2.19 9.61 22.31 0.21 -1.97 15 18 C -0.03 -0.99 6.31 22.32 0.14 -0.85 15 19 Cl -0.04 -1.14 27.30 -2.72 -0.07 -1.21 15 20 H 0.29 14.99 8.31 -92.70 -0.77 14.22 15 21 H 0.13 4.63 6.90 -2.39 -0.02 4.62 15 22 H 0.07 3.07 8.08 -2.39 -0.02 3.06 15 23 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 24 H 0.16 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.17 3.11 8.06 -2.91 -0.02 3.08 15 Total: -1.00 -69.83 273.71 2.32 -67.51 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.22 Total: 6.60 kcal Atomic # 6 Polarization: -71.78 SS G_CDS: 2.33 Total: -69.46 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.28 Total: -50.53 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -2.66 Total: -62.39 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 67.64 SS G_CDS: -0.73 Total: 66.91 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.15 Total: -2.28 kcal Total: -69.83 2.32 -67.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868340.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.279 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds