Wall clock time and date at job start Mon Mar 30 2020 07:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47328 * 299.99929 * 3 2 1 6 6 H 1.48506 * 109.47006 * 59.99974 * 3 2 1 7 7 C 1.37877 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99662 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00117 * 0.02562 * 7 2 1 10 10 O 1.42105 * 102.99930 * 66.14604 * 9 7 2 11 11 C 1.81404 * 103.00066 * 179.97438 * 9 7 2 12 12 C 1.50698 * 109.47110 * 179.97438 * 11 9 7 13 13 C 1.38331 * 120.01238 * 269.72695 * 12 11 9 14 14 Cl 1.73596 * 120.00821 * 359.97438 * 13 12 11 15 15 C 1.38360 * 119.98220 * 179.69912 * 13 12 11 16 16 C 1.38222 * 120.01534 * 0.59937 * 15 13 12 17 17 C 1.38220 * 120.02744 * 359.67472 * 16 15 13 18 18 C 1.38331 * 120.01172 * 90.00026 * 12 11 9 19 19 Cl 1.73598 * 120.01087 * 359.97438 * 18 12 11 20 20 H 0.97004 * 120.00043 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46905 * 299.99726 * 11 9 7 22 22 H 1.08994 * 109.47180 * 59.99631 * 11 9 7 23 23 H 1.08005 * 119.99343 * 180.31630 * 15 13 12 24 24 H 1.08004 * 119.98516 * 179.70190 * 16 15 13 25 25 H 1.07995 * 119.99161 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4792 -2.7171 -1.2661 11 6 2.4502 -3.9572 0.0005 12 6 1.8486 -5.3388 0.0012 13 6 1.5779 -5.9751 1.1993 14 17 1.9319 -5.1824 2.7026 15 6 1.0198 -7.2411 1.1992 16 6 0.7441 -7.8751 0.0023 17 6 1.0196 -7.2422 -1.1952 18 6 1.5720 -5.9736 -1.1964 19 17 1.9172 -5.1786 -2.7005 20 1 -0.4850 0.8401 -0.0004 21 1 3.0663 -3.8292 -0.8895 22 1 3.0664 -3.8291 0.8904 23 1 0.8037 -7.7360 2.1345 24 1 0.3129 -8.8654 0.0028 25 1 0.8036 -7.7379 -2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868799.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:32 Heat of formation + Delta-G solvation = -42.154397 kcal Electronic energy + Delta-G solvation = -14864.627783 eV Core-core repulsion = 12020.992730 eV Total energy + Delta-G solvation = -2843.635053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 277.968 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.25968 -36.37732 -35.86196 -33.59120 -32.83786 -32.40903 -30.39638 -26.70787 -25.67649 -22.58443 -21.49137 -18.05362 -16.94522 -15.88548 -15.43599 -15.29790 -15.10486 -14.07684 -14.03569 -13.43025 -13.07715 -12.52583 -12.45475 -11.95708 -11.85869 -11.53336 -11.38357 -11.15921 -10.81014 -10.77029 -10.58444 -10.51198 -10.31752 -10.12091 -9.17002 -8.84013 -8.50110 -7.98170 -6.82275 -6.30735 -4.80268 1.17906 1.29044 2.21426 2.65244 3.10053 3.18274 3.23617 3.46233 3.84237 4.17497 4.80511 4.87128 4.98770 5.06759 5.31455 5.40532 5.56377 5.77650 5.81486 6.18823 6.27427 6.32061 6.58655 6.60791 6.80169 7.47899 8.20171 9.09143 10.47398 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.007015 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.116668 B = 3990.534550 C = 4808.005284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.121 3.879 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.823 4.823 8 H 0.080 0.920 9 S 1.350 4.650 10 O -0.880 6.880 11 C -0.460 4.460 12 C -0.015 4.015 13 C -0.035 4.035 14 Cl -0.054 7.054 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.105 4.105 18 C -0.033 4.033 19 Cl -0.047 7.047 20 H 0.280 0.720 21 H 0.091 0.909 22 H 0.114 0.886 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -13.488 5.057 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.093 4.093 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.964 4.964 8 H 0.099 0.901 9 S 1.545 4.455 10 O -0.874 6.874 11 C -0.586 4.586 12 C -0.017 4.017 13 C -0.063 4.063 14 Cl -0.025 7.025 15 C -0.123 4.123 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.061 4.061 19 Cl -0.018 7.018 20 H 0.090 0.910 21 H 0.110 0.890 22 H 0.132 0.868 23 H 0.154 0.846 24 H 0.153 0.847 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.742 -13.445 5.022 14.371 hybrid contribution 2.023 1.499 -1.821 3.107 sum 2.765 -11.946 3.201 12.672 Atomic orbital electron populations 1.69899 1.06466 1.29203 1.43240 1.24745 0.94485 0.99874 0.90169 0.86378 0.80592 0.81793 0.78260 1.19059 1.20266 1.19800 1.27503 1.02051 1.05976 1.60844 0.90122 1.69853 0.83696 0.84364 1.07542 1.92837 1.63401 1.85305 1.45888 1.27570 1.18601 1.05348 1.07092 1.19172 0.96894 0.95688 0.89992 1.20590 1.04490 0.94295 0.86909 1.98363 1.93409 1.80271 1.30478 1.21052 0.98817 0.93186 0.99235 1.20899 1.01522 1.00285 0.91091 1.21083 0.98701 0.93223 0.99348 1.20749 1.03571 0.94038 0.87709 1.98395 1.93272 1.79914 1.30213 0.90995 0.89049 0.86781 0.84573 0.84657 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.37 13.15 55.43 0.73 -23.64 15 2 C 0.12 3.33 5.46 -17.82 -0.10 3.23 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.82 -22.60 9.38 30.60 0.29 -22.31 15 8 H 0.08 2.15 7.81 -52.49 -0.41 1.74 15 9 S 1.35 33.39 12.96 -107.50 -1.39 31.99 15 10 O -0.88 -26.22 17.41 -35.23 -0.61 -26.83 15 11 C -0.46 -9.45 5.22 36.00 0.19 -9.26 15 12 C -0.01 -0.27 5.15 -104.55 -0.54 -0.80 15 13 C -0.03 -0.53 6.31 -39.50 -0.25 -0.78 15 14 Cl -0.05 -0.77 27.29 -51.86 -1.42 -2.19 15 15 C -0.10 -1.29 9.83 -39.54 -0.39 -1.68 15 16 C -0.12 -1.39 10.04 -39.59 -0.40 -1.79 15 17 C -0.10 -1.47 9.83 -39.54 -0.39 -1.85 15 18 C -0.03 -0.58 6.31 -39.50 -0.25 -0.83 15 19 Cl -0.05 -0.92 26.90 -51.86 -1.39 -2.32 15 20 H 0.28 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.09 2.00 6.91 -51.92 -0.36 1.64 15 22 H 0.11 2.11 6.89 -51.93 -0.36 1.76 15 23 H 0.14 1.28 8.06 -52.48 -0.42 0.86 15 24 H 0.14 1.10 8.06 -52.48 -0.42 0.67 15 25 H 0.13 1.56 8.06 -52.49 -0.42 1.13 15 LS Contribution 270.21 15.07 4.07 4.07 Total: -1.00 -33.18 270.21 -8.40 -41.58 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -1.53 Total: -2.41 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: -1.83 Total: -36.07 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.73 Total: -23.64 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.61 Total: -26.83 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 33.39 SS G_CDS: -1.39 Total: 31.99 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -2.81 Total: -4.51 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.18 -8.40 -41.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868799.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.574 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds