Wall clock time and date at job start Mon Mar 30 2020 07:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48498 * 109.47259 * 85.18774 * 3 2 1 5 5 H 1.48498 * 109.47494 * 205.18840 * 3 2 1 6 6 H 1.48507 * 109.47141 * 325.18740 * 3 2 1 7 7 C 1.39938 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00655 * 196.72598 * 7 2 1 9 9 C 1.41360 * 119.99685 * 16.71664 * 7 2 1 10 10 C 1.40738 * 120.22833 * 25.72943 * 9 7 2 11 11 C 1.37694 * 119.78910 * 179.72212 * 10 9 7 12 12 Cl 1.73590 * 119.86266 * 180.31882 * 11 10 9 13 13 C 1.38784 * 120.27153 * 0.57411 * 11 10 9 14 14 C 1.38737 * 120.48100 * 359.69716 * 13 11 10 15 15 F 1.35099 * 119.90040 * 180.02562 * 14 13 11 16 16 C 1.38010 * 120.20150 * 0.02562 * 14 13 11 17 17 Br 1.89095 * 120.14202 * 179.97438 * 16 14 13 18 18 H 0.96999 * 119.99520 * 0.02562 * 1 2 3 19 19 H 1.07994 * 120.10767 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.75778 * 179.72308 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3882 2.1051 1.3951 5 1 3.5871 1.4130 -0.5958 6 1 1.4944 2.6212 -0.7993 7 6 2.0081 -1.2119 -0.0005 8 1 3.0538 -1.2318 0.2686 9 6 1.3461 -2.4100 -0.3532 10 6 0.2172 -2.3751 -1.1928 11 6 -0.4173 -3.5482 -1.5352 12 17 -1.8049 -3.5081 -2.5774 13 6 0.0450 -4.7621 -1.0463 14 6 1.1534 -4.8091 -0.2133 15 9 1.5936 -5.9972 0.2555 16 6 1.8077 -3.6458 0.1379 17 35 3.3180 -3.7118 1.2739 18 1 -0.4849 0.8401 -0.0004 19 1 -0.1475 -1.4317 -1.5713 20 1 -0.4617 -5.6767 -1.3166 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575675627.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:33 Heat of formation + Delta-G solvation = -46.470745 kcal Electronic energy + Delta-G solvation = -11881.628268 eV Core-core repulsion = 9257.165182 eV Total energy + Delta-G solvation = -2624.463086 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.03237 -37.77266 -35.66101 -33.91814 -31.07838 -29.66622 -27.92128 -25.72222 -21.56869 -21.06981 -18.01524 -16.10218 -15.60006 -15.01679 -14.81725 -14.74114 -13.65018 -13.09002 -12.55220 -12.31011 -11.80204 -11.39923 -11.37714 -10.95066 -10.83716 -10.51558 -10.32410 -10.00848 -9.56548 -9.41265 -9.01343 -7.82232 -7.51177 -7.16364 -4.83847 2.14771 2.35501 2.82606 2.90660 2.91895 2.99061 3.06861 3.68259 4.13047 5.05201 5.33329 5.97583 6.33617 6.47038 6.75872 6.89134 6.92966 7.35804 7.40786 7.66800 8.07200 8.32665 8.38254 9.75559 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.012903 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.120854 B = 2169.592237 C = 4100.911485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.271 1.271 7 C -0.427 4.427 8 H 0.100 0.900 9 C 0.150 3.850 10 C -0.152 4.152 11 C 0.024 3.976 12 Cl -0.105 7.105 13 C -0.276 4.276 14 C 0.165 3.835 15 F -0.147 7.147 16 C -0.235 4.235 17 Br -0.079 7.079 18 H 0.291 0.709 19 H 0.140 0.860 20 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -1.316 -0.202 2.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.118 0.882 9 C 0.145 3.855 10 C -0.172 4.172 11 C -0.003 4.003 12 Cl -0.076 7.076 13 C -0.298 4.298 14 C 0.144 3.856 15 F -0.126 7.126 16 C -0.316 4.316 17 Br 0.005 6.995 18 H 0.102 0.898 19 H 0.157 0.843 20 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.377 -1.214 0.165 2.674 hybrid contribution -0.225 0.481 -0.227 0.577 sum 2.152 -0.733 -0.062 2.274 Atomic orbital electron populations 1.69789 1.07874 1.30589 1.30788 1.26093 0.94875 1.02117 0.91690 0.86118 0.80856 0.79420 0.79631 1.18972 1.17799 1.19585 1.19906 0.98654 0.90125 1.36691 0.88204 1.17062 0.89907 0.90524 0.87997 1.21287 0.98557 0.96289 1.01113 1.20357 0.89697 0.94716 0.95531 1.98279 1.43515 1.98967 1.66871 1.19947 1.02366 0.97118 1.10331 1.16863 0.93983 0.79146 0.95654 1.91410 1.88966 1.45105 1.87084 1.21547 1.02596 0.95183 1.12300 1.96314 1.39181 1.98928 1.65078 0.89820 0.84254 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.76 10.97 55.55 0.61 -17.15 14 2 C 0.07 1.67 5.15 -17.34 -0.09 1.58 14 3 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 14 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 5 H -0.25 -4.67 7.11 56.52 0.40 -4.27 14 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 7 C -0.43 -10.19 8.44 -37.76 -0.32 -10.51 14 8 H 0.10 2.33 6.90 -52.49 -0.36 1.96 14 9 C 0.15 3.69 5.56 -106.81 -0.59 3.10 14 10 C -0.15 -3.61 8.45 -38.84 -0.33 -3.94 14 11 C 0.02 0.53 6.31 -39.58 -0.25 0.28 14 12 Cl -0.10 -2.00 28.94 -51.86 -1.50 -3.50 14 13 C -0.28 -6.02 9.81 -39.20 -0.38 -6.40 14 14 C 0.17 3.76 7.26 -39.48 -0.29 3.47 14 15 F -0.15 -3.19 16.72 2.25 0.04 -3.15 14 16 C -0.24 -5.56 6.29 -38.71 -0.24 -5.80 14 17 Br -0.08 -1.67 31.67 -68.01 -2.15 -3.82 14 18 H 0.29 6.04 8.30 -40.82 -0.34 5.70 14 19 H 0.14 3.37 6.21 -52.49 -0.33 3.04 14 20 H 0.12 2.34 8.06 -52.49 -0.42 1.91 14 LS Contribution 225.96 15.07 3.41 3.41 Total: -1.00 -23.78 225.96 -7.37 -31.15 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -0.25 Total: -0.55 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.49 Total: -18.22 kcal Atomic # 7 Polarization: -17.76 SS G_CDS: 0.61 Total: -17.15 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -1.50 Total: -3.50 kcal Atomic # 35 Polarization: -1.67 SS G_CDS: -2.15 Total: -3.82 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -23.78 -7.37 -31.15 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575675627.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.322 kcal (2) G-P(sol) polarization free energy of solvation -23.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds