Wall clock time and date at job start Mon Mar 30 2020 07:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47200 * 85.18632 * 3 2 1 5 5 H 1.48492 * 109.47657 * 205.18802 * 3 2 1 6 6 H 1.48501 * 109.47026 * 325.19363 * 3 2 1 7 7 C 1.39938 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99804 * 196.72346 * 7 2 1 9 9 C 1.41340 * 120.00207 * 16.71533 * 7 2 1 10 10 C 1.40719 * 120.23248 * 25.73090 * 9 7 2 11 11 C 1.37791 * 119.75757 * 179.74071 * 10 9 7 12 12 F 1.35099 * 119.87727 * 180.27498 * 11 10 9 13 13 C 1.38899 * 120.23707 * 0.53572 * 11 10 9 14 14 C 1.38622 * 120.48281 * 359.74215 * 13 11 10 15 15 Cl 1.73596 * 119.88560 * 179.97438 * 14 13 11 16 16 C 1.37907 * 120.23713 * 359.97395 * 14 13 11 17 17 Br 1.89093 * 120.12690 * 180.02562 * 16 14 13 18 18 H 0.97003 * 119.99776 * 359.97438 * 1 2 3 19 19 H 1.07999 * 120.11618 * 0.02562 * 10 9 7 20 20 H 1.08007 * 119.76070 * 179.75748 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3881 2.1052 1.3952 5 1 3.5870 1.4131 -0.5958 6 1 1.4943 2.6212 -0.7992 7 6 2.0081 -1.2119 -0.0005 8 1 3.0539 -1.2317 0.2686 9 6 1.3462 -2.4099 -0.3531 10 6 0.2174 -2.3752 -1.1926 11 6 -0.4171 -3.5496 -1.5345 12 9 -1.4977 -3.5195 -2.3448 13 6 0.0470 -4.7636 -1.0446 14 6 1.1546 -4.8088 -0.2122 15 17 1.7210 -6.3346 0.3917 16 6 1.8082 -3.6460 0.1378 17 35 3.3192 -3.7114 1.2729 18 1 -0.4850 0.8401 0.0004 19 1 -0.1474 -1.4319 -1.5713 20 1 -0.4586 -5.6791 -1.3143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575676432.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:29 Heat of formation + Delta-G solvation = -58.540501 kcal Electronic energy + Delta-G solvation = -11880.480910 eV Core-core repulsion = 9255.494440 eV Total energy + Delta-G solvation = -2624.986470 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 277.920 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.72044 -39.52928 -37.39033 -35.63180 -32.69802 -31.61354 -29.58584 -27.46864 -23.49271 -22.70275 -19.73472 -18.02154 -17.17871 -16.62086 -16.54858 -16.39275 -15.41596 -14.74387 -14.41044 -14.26670 -13.46780 -13.14227 -12.87650 -12.41237 -12.26743 -12.08715 -12.04747 -11.73578 -11.31463 -11.11751 -10.57204 -9.61355 -9.25774 -8.84900 -6.63631 0.38641 0.57096 1.00610 1.35801 1.40530 1.45850 1.56444 2.15517 2.41290 3.26913 3.65936 4.26125 4.52757 4.72490 5.00833 5.06037 5.20953 5.49086 5.61466 5.91568 6.32077 6.54460 6.62090 8.10028 Molecular weight = 277.92amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.011016 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.990994 B = 2541.177244 C = 3935.562416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.263 1.263 7 C -0.450 4.450 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.210 4.210 11 C 0.123 3.877 12 F -0.152 7.152 13 C -0.273 4.273 14 C 0.054 3.946 15 Cl -0.062 7.062 16 C -0.218 4.218 17 Br -0.056 7.056 18 H 0.299 0.701 19 H 0.127 0.873 20 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -2.386 1.077 4.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.120 0.880 9 C 0.124 3.876 10 C -0.231 4.231 11 C 0.103 3.897 12 F -0.131 7.131 13 C -0.295 4.295 14 C 0.025 3.975 15 Cl -0.033 7.033 16 C -0.300 4.300 17 Br 0.029 6.971 18 H 0.110 0.890 19 H 0.145 0.855 20 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.302 -2.401 1.543 5.163 hybrid contribution -0.526 0.459 -0.366 0.788 sum 3.777 -1.942 1.177 4.407 Atomic orbital electron populations 1.69825 1.09257 1.31903 1.31213 1.26899 0.95465 1.04921 0.90669 0.85132 0.79469 0.75272 0.79797 1.18409 1.17608 1.18770 1.20118 0.98871 0.90871 1.37837 0.88039 1.17314 0.90310 0.91549 0.88405 1.21291 1.01160 0.96434 1.04234 1.17524 0.85195 0.94612 0.92327 1.91378 1.53108 1.97511 1.71130 1.20210 1.02511 0.96995 1.09746 1.20140 0.95141 0.85313 0.96941 1.98296 1.88586 1.29680 1.86761 1.21660 1.02619 0.94589 1.11101 1.96299 1.37692 1.98866 1.64268 0.89003 0.85548 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.55 10.97 21.83 0.24 -37.31 14 2 C 0.04 1.79 5.15 85.25 0.44 2.23 14 3 Si 0.98 34.01 29.59 68.60 2.03 36.04 14 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 14 5 H -0.25 -8.59 7.11 99.48 0.71 -7.89 14 6 H -0.26 -8.69 7.11 99.48 0.71 -7.98 14 7 C -0.45 -21.58 8.44 23.45 0.20 -21.38 14 8 H 0.10 4.69 6.90 -2.91 -0.02 4.67 14 9 C 0.13 6.40 5.56 -21.28 -0.12 6.28 14 10 C -0.21 -10.37 8.66 22.77 0.20 -10.17 14 11 C 0.12 5.66 7.28 22.32 0.16 5.82 14 12 F -0.15 -6.64 17.26 44.97 0.78 -5.86 14 13 C -0.27 -11.61 9.81 22.52 0.22 -11.39 14 14 C 0.05 2.29 6.31 22.28 0.14 2.43 14 15 Cl -0.06 -2.23 27.72 -2.72 -0.08 -2.31 14 16 C -0.22 -10.02 6.28 22.82 0.14 -9.88 14 17 Br -0.06 -2.23 30.91 -20.37 -0.63 -2.86 14 18 H 0.30 12.55 8.30 -92.71 -0.77 11.78 14 19 H 0.13 6.44 6.21 -2.91 -0.02 6.43 14 20 H 0.14 5.23 8.06 -2.91 -0.02 5.21 14 Total: -1.00 -49.16 224.75 5.01 -44.14 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.29 Total: 4.20 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 1.38 Total: -36.05 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.24 Total: -37.31 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.78 Total: -5.86 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.31 kcal Atomic # 35 Polarization: -2.23 SS G_CDS: -0.63 Total: -2.86 kcal Total: -49.16 5.01 -44.14 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575676432.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.396 kcal (2) G-P(sol) polarization free energy of solvation -49.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds