Wall clock time and date at job start Mon Mar 30 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29444 * 117.96129 * 2 1 4 4 C 1.50071 * 124.07334 * 179.55643 * 3 2 1 5 5 H 1.09005 * 109.24200 * 256.99322 * 4 3 2 6 6 C 1.52993 * 109.35753 * 137.33909 * 4 3 2 7 7 C 1.53021 * 110.15093 * 17.12898 * 4 3 2 8 8 C 1.53401 * 108.43629 * 310.56654 * 7 4 3 9 9 H 1.08995 * 109.63931 * 307.53944 * 8 7 4 10 10 C 1.52996 * 109.64011 * 187.11756 * 8 7 4 11 11 N 1.46899 * 109.47229 * 176.97585 * 10 8 7 12 12 C 1.46844 * 111.00322 * 169.86211 * 11 10 8 13 13 C 1.53038 * 109.52293 * 185.84077 * 12 11 10 14 14 C 1.53127 * 109.27556 * 300.81347 * 13 12 11 15 15 C 1.50698 * 109.57278 * 177.59032 * 14 13 12 16 16 H 1.08002 * 120.00315 * 240.28665 * 15 14 13 17 17 C 1.37879 * 119.99774 * 60.28804 * 15 14 13 18 18 N 1.31508 * 120.00191 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99932 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47270 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46884 * 120.00290 * 19 17 15 22 22 H 1.48501 * 109.47202 * 240.00471 * 19 17 15 23 23 C 1.53123 * 109.15455 * 57.66016 * 14 13 12 24 24 C 1.46854 * 110.99709 * 294.06966 * 11 10 8 25 25 C 1.50160 * 117.88998 * 179.80709 * 2 1 3 26 26 H 1.09007 * 109.47222 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47424 * 119.99946 * 1 2 3 28 28 H 1.08995 * 109.47370 * 240.00150 * 1 2 3 29 29 H 1.07998 * 117.96340 * 359.57531 * 3 2 1 30 30 H 1.09007 * 109.47507 * 299.30970 * 6 4 3 31 31 H 1.09003 * 109.47402 * 59.30620 * 6 4 3 32 32 H 1.09002 * 109.47571 * 179.30499 * 6 4 3 33 33 H 1.08992 * 109.64144 * 190.88382 * 7 4 3 34 34 H 1.09002 * 109.81515 * 70.34926 * 7 4 3 35 35 H 1.09005 * 109.47303 * 56.97561 * 10 8 7 36 36 H 1.09003 * 109.47051 * 296.97169 * 10 8 7 37 37 H 1.09000 * 109.45779 * 305.84787 * 12 11 10 38 38 H 1.08997 * 109.46447 * 65.82141 * 12 11 10 39 39 H 1.09002 * 109.50295 * 180.88214 * 13 12 11 40 40 H 1.08996 * 109.53919 * 60.77976 * 13 12 11 41 41 H 1.08998 * 109.52568 * 297.75102 * 14 13 12 42 42 H 0.97002 * 120.00436 * 179.97438 * 18 17 15 43 43 H 1.09008 * 109.49611 * 182.40478 * 23 14 13 44 44 H 1.08996 * 109.53870 * 62.30906 * 23 14 13 45 45 H 1.08994 * 109.46409 * 294.17527 * 24 11 10 46 46 H 1.09005 * 109.46315 * 54.15405 * 24 11 10 47 47 H 1.09001 * 109.20965 * 76.83972 * 25 2 1 48 48 H 1.09003 * 109.56226 * 317.22342 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 0.0096 5 1 3.9317 1.5753 1.0136 6 6 4.0039 2.4090 -0.9699 7 6 4.2792 -0.0073 -0.4041 8 6 3.6705 -1.1474 0.4222 9 1 3.7205 -0.8987 1.4822 10 6 4.4433 -2.4416 0.1604 11 7 3.9038 -3.5139 1.0072 12 6 4.4519 -4.8191 0.6168 13 6 3.7617 -5.9244 1.4192 14 6 3.9888 -5.6811 2.9138 15 6 3.2623 -6.7324 3.7126 16 1 2.4947 -6.4426 4.4149 17 6 3.5777 -8.0644 3.5468 18 7 4.5128 -8.4173 2.6920 19 14 2.6778 -9.3676 4.5374 20 1 1.6797 -8.7152 5.4224 21 1 1.9843 -10.3006 3.6133 22 1 3.6535 -10.1231 5.3635 23 6 3.4525 -4.2955 3.2845 24 6 4.1517 -3.2374 2.4280 25 6 2.2094 -1.3272 0.0045 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 1.5088 2.0379 -0.0071 30 1 3.6834 2.1365 -1.9755 31 1 3.5253 3.3435 -0.6768 32 1 5.0865 2.5352 -0.9553 33 1 5.3501 0.0540 -0.2108 34 1 4.1082 -0.1917 -1.4647 35 1 5.4970 -2.2893 0.3942 36 1 4.3404 -2.7204 -0.8883 37 1 4.2801 -4.9814 -0.4473 38 1 5.5229 -4.8383 0.8187 39 1 4.1798 -6.8917 1.1404 40 1 2.6926 -5.9153 1.2072 41 1 5.0554 -5.7295 3.1329 42 1 4.7349 -9.3543 2.5756 43 1 3.6497 -4.0991 4.3384 44 1 2.3785 -4.2596 3.1024 45 1 5.2240 -3.2641 2.6215 46 1 3.7617 -2.2511 2.6796 47 1 2.1700 -1.7572 -0.9964 48 1 1.7138 -2.0001 0.7043 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576796020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:22 Heat of formation + Delta-G solvation = -19.974028 kcal Electronic energy + Delta-G solvation = -22391.555529 eV Core-core repulsion = 19444.737238 eV Total energy + Delta-G solvation = -2946.818291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48202 -37.84715 -34.37755 -33.51726 -32.40270 -30.67053 -29.62711 -27.00141 -26.51836 -26.26521 -24.21738 -22.31416 -21.57552 -21.10546 -19.88496 -18.53412 -17.66475 -16.35297 -15.58926 -15.32637 -14.64743 -14.49063 -14.23497 -13.89553 -13.77199 -13.54950 -13.20725 -12.82674 -12.56364 -12.45171 -12.43869 -12.28775 -11.96744 -11.92048 -11.60073 -11.46053 -11.26858 -11.08380 -10.94933 -10.83268 -10.45546 -10.42072 -10.22304 -10.12872 -10.05155 -9.84270 -9.39057 -8.86977 -8.69595 -8.65559 -8.25906 -7.65815 -5.93936 -3.98968 2.29570 3.32300 3.40351 3.44634 4.38971 4.48258 4.63491 4.70028 4.92974 5.05524 5.20181 5.26557 5.34684 5.36354 5.48321 5.53995 5.61352 5.62254 5.71997 5.74744 5.82068 5.84642 5.89766 5.91436 5.97214 5.99529 6.02934 6.15090 6.17202 6.21111 6.29941 6.38916 6.41917 6.54768 6.65455 6.69530 6.73808 6.91641 7.08796 7.13790 7.22606 7.49648 7.68393 7.77352 7.89048 8.09950 8.20733 8.52707 9.05106 9.65280 11.12220 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.031378 B = 0.003597 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.129170 B = 7782.799027 C = 8199.039048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C -0.168 4.168 4 C -0.057 4.057 5 H 0.074 0.926 6 C -0.141 4.141 7 C -0.109 4.109 8 C -0.082 4.082 9 H 0.072 0.928 10 C 0.059 3.941 11 N -0.532 5.532 12 C 0.058 3.942 13 C -0.103 4.103 14 C 0.048 3.952 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.106 4.106 24 C 0.058 3.942 25 C -0.068 4.068 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.019 0.981 42 H 0.258 0.742 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 18.275 -7.685 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 C -0.186 4.186 4 C -0.075 4.075 5 H 0.092 0.908 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.100 4.100 9 H 0.091 0.909 10 C -0.069 4.069 11 N -0.257 5.257 12 C -0.069 4.069 13 C -0.141 4.141 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.143 4.143 24 C -0.069 4.069 25 C -0.105 4.105 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.415 18.088 -7.820 19.853 hybrid contribution 0.422 -0.712 0.599 1.022 sum -1.992 17.375 -7.221 18.921 Atomic orbital electron populations 1.20970 0.92921 1.01728 1.02237 1.21107 0.95604 0.95530 0.99293 1.21856 0.95503 0.96828 1.04381 1.19949 0.92895 0.95365 0.99341 0.90801 1.21782 1.00900 0.97871 0.99293 1.21699 0.99165 0.93837 1.00033 1.21219 0.94996 0.93777 1.00038 0.90938 1.22122 0.95569 0.91446 0.97770 1.61981 1.58798 1.01809 1.03100 1.22253 0.96400 0.89405 0.98868 1.21646 0.98658 0.97035 0.96803 1.18682 0.95984 0.90096 0.92314 1.21260 1.20091 0.91136 1.22170 0.92751 1.24971 0.95137 0.98586 0.95381 1.69888 1.31125 1.16598 1.35561 0.86591 0.79732 0.81866 0.80127 1.19841 1.21107 1.21181 1.21667 0.99768 0.96265 0.96642 1.22156 0.97701 0.98935 0.88129 1.20311 0.94295 0.93688 1.02171 0.92627 0.91846 0.91553 0.88514 0.92717 0.92900 0.92741 0.92038 0.91825 0.95617 0.91431 0.92803 0.96147 0.89092 0.93866 0.96264 0.93213 0.93416 0.92575 0.96094 0.92282 0.91279 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.98 36.00 0.36 -0.87 16 2 C -0.12 -1.32 5.84 -100.90 -0.59 -1.91 16 3 C -0.17 -1.79 8.64 -35.90 -0.31 -2.10 16 4 C -0.06 -0.57 2.97 -92.07 -0.27 -0.84 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.14 -1.18 9.14 37.15 0.34 -0.84 16 7 C -0.11 -1.17 4.60 -26.51 -0.12 -1.29 16 8 C -0.08 -1.03 2.13 -90.40 -0.19 -1.22 16 9 H 0.07 0.99 6.28 -51.93 -0.33 0.66 16 10 C 0.06 0.85 4.36 -3.83 -0.02 0.84 16 11 N -0.53 -9.37 4.27 -234.67 -1.00 -10.37 16 12 C 0.06 1.15 5.46 -3.83 -0.02 1.13 16 13 C -0.10 -2.45 5.12 -26.65 -0.14 -2.59 16 14 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 15 C -0.51 -14.09 8.56 -34.44 -0.29 -14.39 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 18 N -0.89 -25.61 11.37 55.43 0.63 -24.98 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 24 C 0.06 1.06 5.30 -3.83 -0.02 1.04 16 25 C -0.07 -0.86 4.90 -28.13 -0.14 -1.00 16 26 H 0.05 0.49 7.56 -51.93 -0.39 0.10 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.94 7.56 -52.49 -0.40 0.55 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.07 0.94 7.97 -51.93 -0.41 0.52 16 37 H 0.05 0.98 8.01 -51.93 -0.42 0.57 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.41 6.18 -51.93 -0.32 2.09 16 40 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.96 6.16 -51.93 -0.32 0.65 16 47 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 48 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -27.79 360.26 -11.12 -38.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -9.30 Total: -1.58 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -1.85 Total: -23.85 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.37 Total: -35.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.79 -11.12 -38.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.936 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds