Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29444 * 117.96129 * 2 1 4 4 C 1.50071 * 124.07334 * 179.55643 * 3 2 1 5 5 H 1.09005 * 109.24200 * 256.99322 * 4 3 2 6 6 C 1.52993 * 109.35753 * 137.33909 * 4 3 2 7 7 C 1.53021 * 110.15093 * 17.12898 * 4 3 2 8 8 C 1.53401 * 108.43629 * 310.56654 * 7 4 3 9 9 H 1.08995 * 109.63931 * 307.53944 * 8 7 4 10 10 C 1.52996 * 109.64011 * 187.11756 * 8 7 4 11 11 N 1.46899 * 109.47229 * 176.97585 * 10 8 7 12 12 C 1.46844 * 111.00322 * 169.86211 * 11 10 8 13 13 C 1.53038 * 109.52293 * 185.84077 * 12 11 10 14 14 C 1.53127 * 109.27556 * 300.81347 * 13 12 11 15 15 C 1.50698 * 109.57278 * 177.59032 * 14 13 12 16 16 H 1.08002 * 120.00315 * 240.28665 * 15 14 13 17 17 C 1.37879 * 119.99774 * 60.28804 * 15 14 13 18 18 N 1.31508 * 120.00191 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99932 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47270 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46884 * 120.00290 * 19 17 15 22 22 H 1.48501 * 109.47202 * 240.00471 * 19 17 15 23 23 C 1.53123 * 109.15455 * 57.66016 * 14 13 12 24 24 C 1.46854 * 110.99709 * 294.06966 * 11 10 8 25 25 C 1.50160 * 117.88998 * 179.80709 * 2 1 3 26 26 H 1.09007 * 109.47222 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47424 * 119.99946 * 1 2 3 28 28 H 1.08995 * 109.47370 * 240.00150 * 1 2 3 29 29 H 1.07998 * 117.96340 * 359.57531 * 3 2 1 30 30 H 1.09007 * 109.47507 * 299.30970 * 6 4 3 31 31 H 1.09003 * 109.47402 * 59.30620 * 6 4 3 32 32 H 1.09002 * 109.47571 * 179.30499 * 6 4 3 33 33 H 1.08992 * 109.64144 * 190.88382 * 7 4 3 34 34 H 1.09002 * 109.81515 * 70.34926 * 7 4 3 35 35 H 1.09005 * 109.47303 * 56.97561 * 10 8 7 36 36 H 1.09003 * 109.47051 * 296.97169 * 10 8 7 37 37 H 1.09000 * 109.45779 * 305.84787 * 12 11 10 38 38 H 1.08997 * 109.46447 * 65.82141 * 12 11 10 39 39 H 1.09002 * 109.50295 * 180.88214 * 13 12 11 40 40 H 1.08996 * 109.53919 * 60.77976 * 13 12 11 41 41 H 1.08998 * 109.52568 * 297.75102 * 14 13 12 42 42 H 0.97002 * 120.00436 * 179.97438 * 18 17 15 43 43 H 1.09008 * 109.49611 * 182.40478 * 23 14 13 44 44 H 1.08996 * 109.53870 * 62.30906 * 23 14 13 45 45 H 1.08994 * 109.46409 * 294.17527 * 24 11 10 46 46 H 1.09005 * 109.46315 * 54.15405 * 24 11 10 47 47 H 1.09001 * 109.20965 * 76.83972 * 25 2 1 48 48 H 1.09003 * 109.56226 * 317.22342 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 0.0096 5 1 3.9317 1.5753 1.0136 6 6 4.0039 2.4090 -0.9699 7 6 4.2792 -0.0073 -0.4041 8 6 3.6705 -1.1474 0.4222 9 1 3.7205 -0.8987 1.4822 10 6 4.4433 -2.4416 0.1604 11 7 3.9038 -3.5139 1.0072 12 6 4.4519 -4.8191 0.6168 13 6 3.7617 -5.9244 1.4192 14 6 3.9888 -5.6811 2.9138 15 6 3.2623 -6.7324 3.7126 16 1 2.4947 -6.4426 4.4149 17 6 3.5777 -8.0644 3.5468 18 7 4.5128 -8.4173 2.6920 19 14 2.6778 -9.3676 4.5374 20 1 1.6797 -8.7152 5.4224 21 1 1.9843 -10.3006 3.6133 22 1 3.6535 -10.1231 5.3635 23 6 3.4525 -4.2955 3.2845 24 6 4.1517 -3.2374 2.4280 25 6 2.2094 -1.3272 0.0045 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 1.5088 2.0379 -0.0071 30 1 3.6834 2.1365 -1.9755 31 1 3.5253 3.3435 -0.6768 32 1 5.0865 2.5352 -0.9553 33 1 5.3501 0.0540 -0.2108 34 1 4.1082 -0.1917 -1.4647 35 1 5.4970 -2.2893 0.3942 36 1 4.3404 -2.7204 -0.8883 37 1 4.2801 -4.9814 -0.4473 38 1 5.5229 -4.8383 0.8187 39 1 4.1798 -6.8917 1.1404 40 1 2.6926 -5.9153 1.2072 41 1 5.0554 -5.7295 3.1329 42 1 4.7349 -9.3543 2.5756 43 1 3.6497 -4.0991 4.3384 44 1 2.3785 -4.2596 3.1024 45 1 5.2240 -3.2641 2.6215 46 1 3.7617 -2.2511 2.6796 47 1 2.1700 -1.7572 -0.9964 48 1 1.7138 -2.0001 0.7043 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576796020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -32.540031 kcal Electronic energy + Delta-G solvation = -22392.100432 eV Core-core repulsion = 19444.737238 eV Total energy + Delta-G solvation = -2947.363194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56837 -39.25393 -36.00746 -34.33008 -33.98821 -32.26333 -31.31672 -28.21433 -27.55005 -27.34563 -25.76431 -23.93957 -23.18903 -21.97611 -21.05597 -20.31839 -18.61330 -18.38618 -16.89045 -16.46734 -16.35659 -15.80217 -15.44370 -15.00202 -14.92162 -14.75532 -14.62826 -14.20640 -14.14150 -14.01009 -13.30591 -13.23645 -13.08332 -13.01480 -12.96533 -12.83195 -12.62113 -12.54846 -12.25108 -12.19851 -12.06833 -11.90985 -11.85878 -11.48209 -11.35879 -11.14482 -10.94365 -10.69130 -10.63708 -10.35771 -9.54002 -9.11596 -8.07568 -6.20844 1.39697 1.41571 1.45265 1.53061 2.43989 3.05246 3.19287 3.72476 3.81448 3.98116 4.20864 4.23137 4.27385 4.31040 4.41305 4.47019 4.48201 4.61255 4.69659 4.70294 4.71394 4.77438 4.80131 4.89189 4.91366 4.92581 4.95260 4.98271 5.03053 5.06444 5.13692 5.16799 5.24220 5.27217 5.31730 5.36239 5.39952 5.45514 5.57905 5.59087 5.64629 5.89183 6.01801 6.05273 6.23071 6.33991 6.38490 6.42094 6.90927 7.46840 8.97110 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.031378 B = 0.003597 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.129170 B = 7782.799027 C = 8199.039048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 C -0.161 4.161 4 C -0.059 4.059 5 H 0.075 0.925 6 C -0.137 4.137 7 C -0.104 4.104 8 C -0.075 4.075 9 H 0.064 0.936 10 C 0.061 3.939 11 N -0.535 5.535 12 C 0.069 3.931 13 C -0.093 4.093 14 C 0.045 3.955 15 C -0.532 4.532 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.098 4.098 24 C 0.067 3.933 25 C -0.063 4.063 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.012 0.988 39 H 0.060 0.940 40 H 0.030 0.970 41 H -0.014 1.014 42 H 0.260 0.740 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.016 0.984 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 20.144 -8.161 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.179 4.179 4 C -0.078 4.078 5 H 0.093 0.907 6 C -0.195 4.195 7 C -0.142 4.142 8 C -0.094 4.094 9 H 0.083 0.917 10 C -0.066 4.066 11 N -0.260 5.260 12 C -0.059 4.059 13 C -0.132 4.132 14 C 0.026 3.974 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.136 4.136 24 C -0.061 4.061 25 C -0.100 4.100 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.004 0.996 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.784 19.975 -8.299 21.809 hybrid contribution 0.552 -1.282 0.747 1.583 sum -2.232 18.693 -7.551 20.284 Atomic orbital electron populations 1.20963 0.92159 1.02553 1.02040 1.21133 0.96311 0.95106 1.00778 1.22064 0.96115 0.96927 1.02809 1.19997 0.92347 0.95480 0.99928 0.90661 1.21745 1.01522 0.97515 0.98669 1.21664 0.99552 0.93306 0.99700 1.21149 0.94809 0.93469 0.99942 0.91731 1.22206 0.95931 0.91034 0.97466 1.61931 1.59028 1.01783 1.03227 1.22023 0.95302 0.89449 0.99096 1.21400 0.97899 0.97262 0.96631 1.18654 0.93769 0.91950 0.93019 1.21615 1.20373 0.92349 1.22662 0.93214 1.25744 0.95908 1.00651 0.96380 1.70022 1.32142 1.17037 1.36551 0.85583 0.78642 0.79133 0.78754 1.19246 1.20577 1.20672 1.21530 0.99475 0.95083 0.97536 1.22045 0.97069 0.98889 0.88049 1.20208 0.94346 0.94180 1.01298 0.91276 0.91675 0.92177 0.87288 0.92786 0.92026 0.91968 0.91239 0.91580 0.95192 0.90546 0.90967 0.96967 0.92188 0.95086 0.99571 0.93116 0.93190 0.93108 0.96527 0.89754 0.91626 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.98 71.23 0.71 -1.54 16 2 C -0.13 -2.83 5.84 -15.07 -0.09 -2.92 16 3 C -0.16 -3.04 8.64 27.04 0.23 -2.81 16 4 C -0.06 -1.02 2.97 -11.73 -0.03 -1.05 16 5 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 6 C -0.14 -1.87 9.14 71.98 0.66 -1.21 16 7 C -0.10 -1.96 4.60 30.74 0.14 -1.82 16 8 C -0.07 -1.75 2.13 -10.65 -0.02 -1.77 16 9 H 0.06 1.62 6.28 -2.39 -0.02 1.61 16 10 C 0.06 1.66 4.36 86.30 0.38 2.03 16 11 N -0.54 -18.41 4.27 -896.36 -3.83 -22.24 16 12 C 0.07 2.73 5.46 86.33 0.47 3.20 16 13 C -0.09 -4.57 5.12 30.65 0.16 -4.42 16 14 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 15 C -0.53 -30.22 8.56 25.60 0.22 -30.00 16 16 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 17 C 0.01 0.65 5.31 84.66 0.45 1.10 16 18 N -0.92 -53.96 11.37 21.45 0.24 -53.71 16 19 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 24 C 0.07 2.40 5.30 86.32 0.46 2.85 16 25 C -0.06 -1.54 4.90 29.69 0.15 -1.39 16 26 H 0.07 1.08 7.56 -2.38 -0.02 1.06 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.80 7.56 -2.91 -0.02 1.78 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 35 H 0.03 0.80 8.12 -2.38 -0.02 0.78 16 36 H 0.08 1.96 7.97 -2.39 -0.02 1.94 16 37 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 3.30 6.18 -2.39 -0.01 3.28 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 2.61 6.16 -2.38 -0.01 2.60 16 47 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 48 H 0.06 1.78 8.03 -2.39 -0.02 1.76 16 Total: -1.00 -60.29 360.26 3.33 -56.97 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.88 Total: 13.95 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 4.01 Total: -41.52 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -3.59 Total: -75.95 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.29 3.33 -56.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.426 kcal (2) G-P(sol) polarization free energy of solvation -60.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds